Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Reverse (-)

51169788 .. 51174331

Gene Structure 4544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG215800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGTTCTCTCAGAAATGAACCAGACAGAGATGACAAGGCGGAGGAGCCCATTTTAGCAGAGCAAACCCAGAGATTCTGTATGTTTCCCATTCGGTATCAGCAACTTTGGGAGATGTACAAGAAGGCTATGGCTAGTTTCTGGACTGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGAGGCTCTGACTGACTCCGAGAAACACTTTATAAGCCATGTCCTGGCATTTTTTGCCGCATCAGATGGGATTGTTTTGGAGAATTTGGCTGCAAGATTTCTAAATGATGTTCAAATTCCAGAGGCTCGGGCATTCTATGGATTTCAGCTTGCAATGGAGAATATTCATTCTGAGATGTACAGCTTGCTTTTAGAGACATACATCAAGGATCCTAAAGAGAAGCACAGATTGTTCAATGCAATTGAAAACATTCCTTGTGTCTCTAGGAAGGCCAAGTGGGCTGTACATTGGATAAACAGTTCAAATTCGTTTGCAGAGAGACTTGTTGCTTTCGCATGTGTTGAAGGAATCTTCTTCTCTGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGGGGACTAATGCCAGGTTTGACATTCTCAAATGAGCTTATTTCTAGAGATGAGGGCCTCCACTGTGATTTTGCTTGCCTTCTGTACAGTTTGTTACAGAAGCAACTTAATCCGGAAAAAGTTCATGGAATTATACATGAAGCTGTCGAAATTGAGACCGAGTTTGTTTGTGATGCCCTCCCATGTGCATTGATTGGCATGAACTCAGCTCTCATGAGCCAGTACATAAAATTTGTTGCCGATCGACTCTTGGTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACTTCAAGGGAAATAGTGGGGGAGTTGCAGTGTACTCTTTATTTTATATAATTTTATTGTTAGATGTCAGTACCAATATAATAGCTCTCCCATCCAGGTTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

326

Amino Acids

37.18

Weight (kDa)

5.62

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	25 - 282	4.9e-114	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AccB7I	CCANNNNNTGG	2 cut(s)	229, 567
AccIII	TCCGGA	1 cut(s)	691
AciI	CCGC	2 cut(s)	41, 243
AclWI	GGATC	2 cut(s)	389, 402
AcsI	RAATTY	4 cut(s)	268, 300, 490, 809
AfaI	GTAC	8 cut(s)	119, 177, 365, 471, 665, 803, 908, 946
AfiI	CCNNNNNNNGG	2 cut(s)	229, 567
AgsI	TTSAA	6 cut(s)	299, 421, 431, 489, 530, 880
AhdI	GACNNNNNGTC	1 cut(s)	830
AjnI	CCWGG	4 cut(s)	168, 228, 592, 968
AloI	GAACNNNNNNTCC	2 cut(s)	469, 501
AluBI	AGCT	7 cut(s)	334, 369, 552, 616, 722, 788, 959
AluI	AGCT	7 cut(s)	334, 369, 552, 616, 722, 788, 959
Alw26I	GTCTC	5 cut(s)	374, 451, 499, 728, 838
AlwI	GGATC	2 cut(s)	389, 402
Ama87I	CYCGRG	1 cut(s)	312
Aor13HI	TCCGGA	1 cut(s)	691
AoxI	GGCC	2 cut(s)	456, 634
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	4 cut(s)	268, 300, 490, 809
Asp700I	GAANNNNTTC	2 cut(s)	435, 699
AspS9I	GGNCC	1 cut(s)	634
AvaI	CYCGRG	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	245, 973
BciT130I	CCWGG	4 cut(s)	170, 230, 594, 970
BcoDI	GTCTC	5 cut(s)	374, 451, 499, 728, 838
BfaI	CTAG	3 cut(s)	135, 450, 624
BglI	GCCNNNNNGGC	1 cut(s)	464
BisI	GCNGC	2 cut(s)	243, 276
BlsI	GCNGC	2 cut(s)	244, 277
Bme1390I	CCNGG	4 cut(s)	170, 230, 594, 970
BmeRI	GACNNNNNGTC	1 cut(s)	830
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	634
BmiI	GGNNCC	2 cut(s)	48, 396
BmrFI	CCNGG	4 cut(s)	170, 230, 594, 970
BmsI	GCATC	2 cut(s)	254, 742
Bpu10I	CCTNAGC	1 cut(s)	150
BsaI	GGTCTC	2 cut(s)	728, 838
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	691
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 567
Bse1I	ACTGG	1 cut(s)	799
Bse3DI	GCAATG	1 cut(s)	345
BseAI	TCCGGA	1 cut(s)	691
BseBI	CCWGG	4 cut(s)	170, 230, 594, 970
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	178, 965
BseLI	CCNNNNNNNGG	2 cut(s)	229, 567
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	4 cut(s)	25, 141, 348, 798
BseNI	ACTGG	1 cut(s)	799
BseRI	GAGGAG	2 cut(s)	59, 167
BseXI	GCAGC	1 cut(s)	262
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	2 cut(s)	458, 636
BsiEI	CGRYCG	1 cut(s)	823
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	692
BslFI	GGGAC	1 cut(s)	597
BslI	CCNNNNNNNGG	2 cut(s)	229, 567
BsmAI	GTCTC	5 cut(s)	374, 451, 499, 728, 838
BsmFI	GGGAC	1 cut(s)	597
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	458, 636
Bso31I	GGTCTC	2 cut(s)	728, 838
BsoBI	CYCGRG	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp13I	TCCGGA	1 cut(s)	691
Bsp1407I	TGTACA	5 cut(s)	117, 175, 363, 469, 663
Bsp143I	GATC	3 cut(s)	160, 394, 820
BspACI	CCGC	2 cut(s)	41, 243
BspANI	GGCC	2 cut(s)	458, 636
BspCNI	CTCAG	4 cut(s)	24, 142, 349, 797
BspEI	TCCGGA	1 cut(s)	691
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	2 cut(s)	48, 396
BspPI	GGATC	2 cut(s)	389, 402
BspTNI	GGTCTC	2 cut(s)	728, 838
BsrDI	GCAATG	1 cut(s)	345
BsrGI	TGTACA	5 cut(s)	117, 175, 363, 469, 663
BsrI	ACTGG	1 cut(s)	799
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	3 cut(s)	160, 394, 820
Bst2UI	CCWGG	4 cut(s)	170, 230, 594, 970
Bst4CI	ACNGT	3 cut(s)	485, 644, 668
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstAUI	TGTACA	5 cut(s)	117, 175, 363, 469, 663
BstC8I	GCNNGC	3 cut(s)	336, 371, 655
BstDEI	CTNAG	4 cut(s)	11, 150, 357, 784
BstF5I	GGATG	2 cut(s)	178, 965
BstKTI	GATC	3 cut(s)	163, 397, 823
BstMAI	GTCTC	5 cut(s)	374, 451, 499, 728, 838
BstMBI	GATC	3 cut(s)	160, 394, 820
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 464
BstNI	CCWGG	4 cut(s)	170, 230, 594, 970
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	4 cut(s)	168, 228, 592, 968
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	458, 636
BtsCI	GGATG	2 cut(s)	178, 965
BtsI	GCAGTG	2 cut(s)	188, 909
BtsIMutI	CAGTG	3 cut(s)	188, 640, 909
Cac8I	GCNNGC	3 cut(s)	336, 371, 655
CciI	TCATGA	1 cut(s)	792
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	8 cut(s)	118, 176, 364, 470, 664, 802, 907, 945
CviAII	CATG	7 cut(s)	224, 522, 704, 716, 762, 778, 793
CviQI	GTAC	8 cut(s)	118, 176, 364, 470, 664, 802, 907, 945
DdeI	CTNAG	4 cut(s)	11, 150, 357, 784
DpnI	GATC	3 cut(s)	162, 396, 822
DpnII	GATC	3 cut(s)	160, 394, 820
DriI	GACNNNNNGTC	1 cut(s)	830
Eam1105I	GACNNNNNGTC	1 cut(s)	830
EciI	GGCGGA	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	2 cut(s)	728, 838
Eco88I	CYCGRG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRII	CCWGG	4 cut(s)	168, 228, 592, 968
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	7 cut(s)	227, 525, 707, 719, 765, 781, 796
FaqI	GGGAC	1 cut(s)	597
FatI	CATG	7 cut(s)	223, 521, 703, 715, 761, 777, 792
Fnu4HI	GCNGC	2 cut(s)	243, 276
FokI	GGATG	2 cut(s)	185, 952
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	2 cut(s)	243, 276
FspBI	CTAG	3 cut(s)	135, 450, 624
GluI	GCNGC	2 cut(s)	243, 276
HaeIII	GGCC	2 cut(s)	458, 636
HapII	CCGG	1 cut(s)	692
Hin1II	CATG	7 cut(s)	227, 525, 707, 719, 765, 781, 796
HindIII	AAGCTT	1 cut(s)	550
HinfI	GANTC	4 cut(s)	75, 200, 534, 825
HpaII	CCGG	1 cut(s)	692
Hpy166II	GTNNAC	1 cut(s)	907
Hpy188I	TCNGA	5 cut(s)	14, 195, 205, 250, 358
Hpy188III	TCNNGA	6 cut(s)	142, 305, 546, 624, 692, 793
Hpy8I	GTNNAC	1 cut(s)	907
HpyAV	CCTTC	4 cut(s)	118, 448, 524, 668
HpyCH4III	ACNGT	3 cut(s)	485, 644, 668
HpyCH4V	TGCA	7 cut(s)	278, 338, 425, 500, 767, 902, 976
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 464
HpyF3I	CTNAG	4 cut(s)	11, 150, 357, 784
Hsp92II	CATG	7 cut(s)	227, 525, 707, 719, 765, 781, 796
Kpn2I	TCCGGA	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	160, 394, 820
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	254, 742
MaeI	CTAG	3 cut(s)	135, 450, 624
MaeIII	GTNAC	1 cut(s)	672
MalI	GATC	3 cut(s)	162, 396, 822
MboI	GATC	3 cut(s)	160, 394, 820
MboII	GAAGA	2 cut(s)	529, 532
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	8 cut(s)	268, 300, 426, 490, 708, 729, 809, 924
MlyI	GAGTC	2 cut(s)	194, 819
MnlI	CCTC	9 cut(s)	37, 145, 148, 181, 301, 573, 625, 647, 767
MroI	TCCGGA	1 cut(s)	691
MroXI	GAANNNNTTC	2 cut(s)	435, 699
MseI	TTAA	2 cut(s)	573, 687
MspI	CCGG	1 cut(s)	692
MspR9I	CCNGG	4 cut(s)	170, 230, 594, 970
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	4 cut(s)	170, 230, 594, 970
MwoI	GCNNNNNNNGC	2 cut(s)	239, 464
NdeII	GATC	3 cut(s)	160, 394, 820
NlaIII	CATG	7 cut(s)	227, 525, 707, 719, 765, 781, 796
NlaIV	GGNNCC	2 cut(s)	48, 396
NspI	RCATGY	1 cut(s)	525
PagI	TCATGA	1 cut(s)	792
PctI	GAATGC	1 cut(s)	317
PdmI	GAANNNNTTC	2 cut(s)	435, 699
PfeI	GAWTC	2 cut(s)	75, 534
PflMI	CCANNNNNTGG	2 cut(s)	229, 567
PkrI	GCNGC	2 cut(s)	244, 277
Ple19I	CGATCG	1 cut(s)	823
PleI	GAGTC	2 cut(s)	194, 819
PpsI	GAGTC	2 cut(s)	194, 819
PsiI	TTATAA	1 cut(s)	218
Psp6I	CCWGG	4 cut(s)	168, 228, 592, 968
PspGI	CCWGG	4 cut(s)	168, 228, 592, 968
PspN4I	GGNNCC	2 cut(s)	48, 396
PspPI	GGNCC	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	394
PvuI	CGATCG	1 cut(s)	823
RsaI	GTAC	8 cut(s)	119, 177, 365, 471, 665, 803, 908, 946
RsaNI	GTAC	8 cut(s)	118, 176, 364, 470, 664, 802, 907, 945
SaqAI	TTAA	2 cut(s)	573, 687
SatI	GCNGC	2 cut(s)	243, 276
Sau3AI	GATC	3 cut(s)	160, 394, 820
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	2 cut(s)	194, 819
ScrFI	CCNGG	4 cut(s)	170, 230, 594, 970
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	2 cut(s)	254, 742
Sse9I	AATT	8 cut(s)	268, 300, 426, 490, 708, 729, 809, 924
SsiI	CCGC	2 cut(s)	41, 243
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	3 cut(s)	135, 450, 624
StyD4I	CCNGG	4 cut(s)	168, 228, 592, 968
TaaI	ACNGT	3 cut(s)	485, 644, 668
TaqI	TCGA	2 cut(s)	726, 823
TaqII	GACCGA	1 cut(s)	752
TasI	AATT	8 cut(s)	268, 300, 426, 490, 708, 729, 809, 924
TatI	WGTACW	7 cut(s)	117, 175, 363, 469, 663, 801, 906
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	75, 534
Tru1I	TTAA	2 cut(s)	573, 687
Tru9I	TTAA	2 cut(s)	573, 687
TscAI	CASTG	3 cut(s)	188, 647, 909
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	5 cut(s)	33, 341, 692, 732, 794
TspRI	CASTG	3 cut(s)	188, 647, 909
Van91I	CCANNNNNTGG	2 cut(s)	229, 567
XapI	RAATTY	4 cut(s)	268, 300, 490, 809
XbaI	TCTAGA	1 cut(s)	623
XceI	RCATGY	1 cut(s)	525
XmnI	GAANNNNTTC	2 cut(s)	435, 699
XspI	CTAG	3 cut(s)	135, 450, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.