Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Forward (+)

17980884 .. 17985076

Gene Structure 4193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGTTCTCTGAGAAATGAACCAGACAGAGATGACAAGGAGGAGGAAGAAGAAGTAGAACCCATTTTGGCAGCGCAAACCCAGAGATTCTGTATGTTCCCCATTAGGTATCAGCAACTTTGGGAGATGTACAAGAAGGCTGAGGCTAGTTTCTGGACTGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGATGCTTTGACTGACTCCGAGAGACACTTCATAAGCCATGTCCTGGCATTTTTTGCCGCATCAGATGGGATTGTTTTGGAGAATTTGGCTGCAAGATTTCTAAATGATGTTCAAATTCCAGAGGCTCGGGCATTCTATGGATTTCAACTTGCAATGGAGAATATTCATTCTGAGATGTACAGCTTGCTTTTAGAGACATACATCAAGGATCCTAAAGAGAAGCACAGATTGTTCAACGCAATTGAAAACATTCCTTGTGTCTCTAGGAAGGCCCAGTGGGCTTTAAATTGGATAAACAGTTCAAATTCGTTTGTGGAGAGACTTGTTGCTTTCGCATGTGTTGAAGGAATTTTTTTCTCAGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGGGCACTAATGCCAGGTCTGACATTCTCAAATGAGCTTATTTCTAGAGATGAGGGCCTCCACTGTGATTTTGCTTGCCTTCTGTACAGTTTGTTACAAAAGCAACTTAATTCGGAAAAAGTTCATGGAATTATACATGAAGCTGTCGAAATTGAAACCGAGTTTGTGTGTGACGCCCTCCCATGTGCATTGATTGGCATGAACTCAGCTCTCATGAGCCAGTACATAAAATTTGTTGCTGATCGACTACTGGTTGCGTTAGGTTATGAGAAGAAGTACAGTGTGGAAAATCCTTTCGATTGGATGGAGTTCATTTCTTTACAAGGGAAGACAAACTTCTTCGAGAAAAGGGTGGGCGACTATCAGAAAGCATCTGTTATGTCGAGCCTCCAAGATGGAGGAAAGAATTTCGTCTTCAACATGGATGAGGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

343

Amino Acids

39.47

Weight (kDa)

4.79

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	29 - 295	5.6e-118	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	241, 579
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	401, 414
AcsI	RAATTY	6 cut(s)	280, 312, 502, 546, 821, 997
AcyI	GRCGYC	1 cut(s)	765
AfaI	GTAC	6 cut(s)	131, 189, 377, 677, 815, 869
AfiI	CCNNNNNNNGG	2 cut(s)	241, 579
AgsI	TTSAA	8 cut(s)	311, 344, 433, 443, 501, 542, 746, 1009
AjnI	CCWGG	3 cut(s)	180, 240, 604
AloI	GAACNNNNNNTCC	2 cut(s)	481, 513
AluBI	AGCT	5 cut(s)	381, 564, 628, 734, 800
AluI	AGCT	5 cut(s)	381, 564, 628, 734, 800
Alw26I	GTCTC	4 cut(s)	214, 386, 463, 511
AlwI	GGATC	2 cut(s)	401, 414
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	2 cut(s)	468, 646
ApeKI	GCWGC	2 cut(s)	71, 287
ApoI	RAATTY	6 cut(s)	280, 312, 502, 546, 821, 997
Asp700I	GAANNNNTTC	2 cut(s)	447, 711
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	469, 646
AvaI	CYCGRG	1 cut(s)	324
BaeGI	GKGCMC	1 cut(s)	598
BamHI	GGATCC	1 cut(s)	406
BbsI	GAAGAC	2 cut(s)	926, 997
BbvCI	CCTCAGC	2 cut(s)	141, 162
BbvI	GCAGC	2 cut(s)	83, 274
BccI	CCATC	3 cut(s)	257, 889, 980
BciT130I	CCWGG	3 cut(s)	182, 242, 606
BcoDI	GTCTC	4 cut(s)	214, 386, 463, 511
BfaI	CTAG	4 cut(s)	147, 462, 636, 1027
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	3 cut(s)	72, 255, 288
BlsI	GCNGC	3 cut(s)	73, 256, 289
Bme1390I	CCNGG	3 cut(s)	182, 242, 606
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	469, 646
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	3 cut(s)	182, 242, 606
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	3 cut(s)	190, 266, 971
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	2 cut(s)	926, 997
Bpu10I	CCTNAGC	2 cut(s)	141, 162
BsaHI	GRCGYC	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 579
Bse1I	ACTGG	3 cut(s)	472, 811, 846
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	182, 242, 606
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	4 cut(s)	190, 205, 900, 1021
BseLI	CCNNNNNNNGG	2 cut(s)	241, 579
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	5 cut(s)	132, 153, 360, 570, 810
BseNI	ACTGG	3 cut(s)	472, 811, 846
BseRI	GAGGAG	2 cut(s)	56, 179
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	2 cut(s)	83, 274
BshFI	GGCC	2 cut(s)	470, 648
BsiHKCI	CYCGRG	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	241, 579
BsmAI	GTCTC	4 cut(s)	214, 386, 463, 511
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	470, 648
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp1407I	TGTACA	4 cut(s)	129, 187, 375, 675
Bsp143I	GATC	3 cut(s)	172, 406, 832
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	470, 648
BspCNI	CTCAG	5 cut(s)	133, 154, 361, 569, 809
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	401, 414
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	4 cut(s)	129, 187, 375, 675
BsrI	ACTGG	3 cut(s)	472, 811, 846
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	172, 406, 832
BssNI	GRCGYC	1 cut(s)	765
Bst2UI	CCWGG	3 cut(s)	182, 242, 606
Bst4CI	ACNGT	4 cut(s)	497, 656, 680, 872
BstACI	GRCGYC	1 cut(s)	765
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstAUI	TGTACA	4 cut(s)	129, 187, 375, 675
BstC8I	GCNNGC	2 cut(s)	383, 667
BstDEI	CTNAG	6 cut(s)	11, 141, 162, 369, 556, 796
BstF5I	GGATG	4 cut(s)	190, 205, 900, 1021
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	3 cut(s)	175, 409, 835
BstMAI	GTCTC	4 cut(s)	214, 386, 463, 511
BstMBI	GATC	3 cut(s)	172, 406, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 476
BstNI	CCWGG	3 cut(s)	182, 242, 606
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	3 cut(s)	180, 240, 604
BstSLI	GKGCMC	1 cut(s)	598
BstV1I	GCAGC	2 cut(s)	83, 274
BstV2I	GAAGAC	2 cut(s)	926, 997
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	470, 648
BtsCI	GGATG	4 cut(s)	190, 205, 900, 1021
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	4 cut(s)	200, 479, 652, 877
Cac8I	GCNNGC	2 cut(s)	383, 667
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	469, 646
CseI	GACGC	1 cut(s)	773
Csp6I	GTAC	6 cut(s)	130, 188, 376, 676, 814, 868
CviAII	CATG	8 cut(s)	236, 534, 716, 728, 774, 790, 805, 1012
CviQI	GTAC	6 cut(s)	130, 188, 376, 676, 814, 868
DdeI	CTNAG	6 cut(s)	11, 141, 162, 369, 556, 796
DpnI	GATC	3 cut(s)	174, 408, 834
DpnII	GATC	3 cut(s)	172, 406, 832
DraI	TTTAAA	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	3 cut(s)	180, 240, 604
FaeI	CATG	8 cut(s)	239, 537, 719, 731, 777, 793, 808, 1015
FalI	AAGNNNNNCTT	2 cut(s)	911, 943
FatI	CATG	8 cut(s)	235, 533, 715, 727, 773, 789, 804, 1011
Fnu4HI	GCNGC	3 cut(s)	72, 255, 288
FokI	GGATG	3 cut(s)	197, 212, 907
Fsp4HI	GCNGC	3 cut(s)	72, 255, 288
FspBI	CTAG	4 cut(s)	147, 462, 636, 1027
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	3 cut(s)	72, 255, 288
HaeIII	GGCC	2 cut(s)	470, 648
HgaI	GACGC	1 cut(s)	773
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	765
Hin1II	CATG	8 cut(s)	239, 537, 719, 731, 777, 793, 808, 1015
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	2 cut(s)	87, 212
Hpy188I	TCNGA	7 cut(s)	12, 217, 262, 370, 612, 706, 957
Hpy188III	TCNNGA	6 cut(s)	154, 317, 558, 636, 805, 934
HpyAV	CCTTC	4 cut(s)	130, 460, 536, 680
HpyCH4III	ACNGT	4 cut(s)	497, 656, 680, 872
HpyCH4V	TGCA	3 cut(s)	290, 350, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 476
HpyF3I	CTNAG	6 cut(s)	11, 141, 162, 369, 556, 796
Hsp92I	GRCGYC	1 cut(s)	765
Hsp92II	CATG	8 cut(s)	239, 537, 719, 731, 777, 793, 808, 1015
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	3 cut(s)	172, 406, 832
Lsp1109I	GCAGC	2 cut(s)	83, 274
LweI	GCATC	3 cut(s)	190, 266, 971
MaeI	CTAG	4 cut(s)	147, 462, 636, 1027
MaeIII	GTNAC	2 cut(s)	684, 761
MalI	GATC	3 cut(s)	174, 408, 834
MboI	GATC	3 cut(s)	172, 406, 832
MboII	GAAGA	6 cut(s)	59, 62, 874, 922, 931, 997
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	598
MlyI	GAGTC	1 cut(s)	206
MroXI	GAANNNNTTC	2 cut(s)	447, 711
MseI	TTAA	3 cut(s)	482, 585, 699
MspR9I	CCNGG	3 cut(s)	182, 242, 606
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	3 cut(s)	182, 242, 606
MwoI	GCNNNNNNNGC	2 cut(s)	251, 476
NdeII	GATC	3 cut(s)	172, 406, 832
NlaIII	CATG	8 cut(s)	239, 537, 719, 731, 777, 793, 808, 1015
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	761
NspI	RCATGY	1 cut(s)	537
PagI	TCATGA	1 cut(s)	804
PctI	GAATGC	1 cut(s)	329
PdmI	GAANNNNTTC	2 cut(s)	447, 711
PfeI	GAWTC	1 cut(s)	87
PflMI	CCANNNNNTGG	2 cut(s)	241, 579
PkrI	GCNGC	3 cut(s)	73, 256, 289
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp6I	CCWGG	3 cut(s)	180, 240, 604
PspGI	CCWGG	3 cut(s)	180, 240, 604
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	2 cut(s)	469, 646
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	6 cut(s)	131, 189, 377, 677, 815, 869
RsaNI	GTAC	6 cut(s)	130, 188, 376, 676, 814, 868
SaqAI	TTAA	3 cut(s)	482, 585, 699
SatI	GCNGC	3 cut(s)	72, 255, 288
Sau3AI	GATC	3 cut(s)	172, 406, 832
Sau96I	GGNCC	2 cut(s)	469, 646
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	3 cut(s)	182, 242, 606
SduI	GDGCHC	1 cut(s)	598
SetI	ASST	9 cut(s)	110, 171, 383, 566, 610, 630, 736, 802, 856
SfaNI	GCATC	3 cut(s)	190, 266, 971
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	4 cut(s)	147, 462, 636, 1027
StyD4I	CCNGG	3 cut(s)	180, 240, 604
TaaI	ACNGT	4 cut(s)	497, 656, 680, 872
TaqI	TCGA	5 cut(s)	738, 835, 888, 933, 974
TatI	WGTACW	6 cut(s)	129, 187, 375, 675, 813, 867
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	3 cut(s)	482, 585, 699
Tru9I	TTAA	3 cut(s)	482, 585, 699
TscAI	CASTG	4 cut(s)	200, 479, 659, 877
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	2 cut(s)	71, 287
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	7 cut(s)	33, 217, 353, 704, 744, 806, 892
TspRI	CASTG	4 cut(s)	200, 479, 659, 877
Van91I	CCANNNNNTGG	2 cut(s)	241, 579
XapI	RAATTY	6 cut(s)	280, 312, 502, 546, 821, 997
XbaI	TCTAGA	1 cut(s)	635
XceI	RCATGY	1 cut(s)	537
XmnI	GAANNNNTTC	2 cut(s)	447, 711
XspI	CTAG	4 cut(s)	147, 462, 636, 1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.