Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Reverse (-)

42517898 .. 42521857

Gene Structure 3960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00361810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTTCTCTCAGAAATGAACCAGACAGAGATGACAAGGAGGAGGAGGCAGAGGAGCCCATTTTAGCAGAGCAAACCCAGAGATTCTGTATGTTTCCCATTAGGTATCAGCAACTTTGGGAGATGTACAAGAAGGCTATGGCTAGTTTCTGGACTGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGAGGCTCTGACTGACTCCGAGAAACACTTTATAAGCCATGTCCTGGCATTTTTTGCCGCATCAGATGGGATTGTTTTGGAGAATTTGGCTGCAAGATTTCTAAATGATGTTCAAATTCCAGAGGCTCGGGCATTCTATGGATTTCAGCTTGCAATGGAGAATATTCATTCTGGTAAAGCTTTAAATCTGTGCTTGCTTTTAGAGACATACATCAAGGATCCTAAAGAGAAGCACAGATTGTTCAATGCAATTGAAAACATTCCTTGTGTGTCTAGGAAGGCCAAGTGGGCTCTACATTGGATAAACAGTGCAAATTCGTTTGCAGAGAGACTTGTTGCTTTCGCATGTGTTGAAGGAATCTTCTTCTCAGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGGGGACTAATGCCAGGTTTGACATTCTCAAATGAGCTTATTTCTAGAGATGAGGGCCTCCACTGTGATTTTGCTTGCCTTCTGTACAGTTTGTTACAGAAGAAACTTAATCTGGAAAAAGTTCATGGAATTATACATGAAGCTGTCGAAATTGAGACTGAGTTTGTTGCATTAGGTTATGAGAAGAAGTACAATGTGGAAAATCCTTTTGATTGGATGGAGTTCATTTCTTTAAAAGGGAAGACAAATTTCTTTGAGAAAAGGGTGGGCGACTATCAAAAAGCATCTGTTATGTCGAGCCTCCAAGATGGTGGAAAGAATTTCGTCTTCAACATGGATGAGGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

315

Amino Acids

36.43

Weight (kDa)

5.12

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	28 - 262	1.9e-93	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AccB7I	CCANNNNNTGG	2 cut(s)	238, 585
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	2 cut(s)	407, 420
AcsI	RAATTY	5 cut(s)	277, 309, 508, 844, 916
AfaI	GTAC	4 cut(s)	128, 186, 683, 788
AfiI	CCNNNNNNNGG	2 cut(s)	238, 585
AgsI	TTSAA	5 cut(s)	308, 439, 449, 548, 928
AjnI	CCWGG	3 cut(s)	177, 237, 610
AluBI	AGCT	5 cut(s)	343, 374, 570, 634, 740
AluI	AGCT	5 cut(s)	343, 374, 570, 634, 740
Alw26I	GTCTC	3 cut(s)	392, 517, 746
AlwI	GGATC	2 cut(s)	407, 420
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	474, 652
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	5 cut(s)	277, 309, 508, 844, 916
Asp700I	GAANNNNTTC	2 cut(s)	453, 717
AspS9I	GGNCC	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	60, 487
BbsI	GAAGAC	2 cut(s)	845, 916
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	3 cut(s)	254, 808, 899
BciT130I	CCWGG	3 cut(s)	179, 239, 612
BcoDI	GTCTC	3 cut(s)	392, 517, 746
BfaI	CTAG	4 cut(s)	144, 468, 642, 946
BglI	GCCNNNNNGGC	1 cut(s)	482
BisI	GCNGC	2 cut(s)	252, 285
BlsI	GCNGC	2 cut(s)	253, 286
Bme1390I	CCNGG	3 cut(s)	179, 239, 612
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	652
BmiI	GGNNCC	2 cut(s)	57, 414
BmrFI	CCNGG	3 cut(s)	179, 239, 612
BmsI	GCATC	2 cut(s)	263, 890
BpiI	GAAGAC	2 cut(s)	845, 916
Bpu10I	CCTNAGC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 585
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	179, 239, 612
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	3 cut(s)	187, 819, 940
BseLI	CCNNNNNNNGG	2 cut(s)	238, 585
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	4 cut(s)	25, 150, 576, 747
BseRI	GAGGAG	4 cut(s)	56, 59, 68, 176
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	2 cut(s)	476, 654
BsiHKCI	CYCGRG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	2 cut(s)	238, 585
BsmAI	GTCTC	3 cut(s)	392, 517, 746
BsmFI	GGGAC	1 cut(s)	615
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	476, 654
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	60, 487
Bsp1407I	TGTACA	3 cut(s)	126, 184, 681
Bsp143I	GATC	2 cut(s)	169, 412
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	476, 654
BspCNI	CTCAG	4 cut(s)	24, 151, 575, 748
BspLI	GGNNCC	2 cut(s)	57, 414
BspPI	GGATC	2 cut(s)	407, 420
BsrDI	GCAATG	1 cut(s)	354
BsrGI	TGTACA	3 cut(s)	126, 184, 681
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	169, 412
Bst2UI	CCWGG	3 cut(s)	179, 239, 612
Bst4CI	ACNGT	3 cut(s)	503, 662, 686
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	3 cut(s)	126, 184, 681
BstC8I	GCNNGC	3 cut(s)	345, 389, 673
BstDEI	CTNAG	4 cut(s)	11, 159, 562, 756
BstF5I	GGATG	3 cut(s)	187, 819, 940
BstKTI	GATC	2 cut(s)	172, 415
BstMAI	GTCTC	3 cut(s)	392, 517, 746
BstMBI	GATC	2 cut(s)	169, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 482
BstNI	CCWGG	3 cut(s)	179, 239, 612
BstNSI	RCATGY	1 cut(s)	543
BstSCI	CCNGG	3 cut(s)	177, 237, 610
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	2 cut(s)	845, 916
BstX2I	RGATCY	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	908
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	476, 654
BtsCI	GGATG	3 cut(s)	187, 819, 940
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	3 cut(s)	197, 508, 658
Cac8I	GCNNGC	3 cut(s)	345, 389, 673
Cfr13I	GGNCC	1 cut(s)	652
Csp6I	GTAC	4 cut(s)	127, 185, 682, 787
CviAII	CATG	5 cut(s)	233, 540, 722, 734, 931
CviQI	GTAC	4 cut(s)	127, 185, 682, 787
DdeI	CTNAG	4 cut(s)	11, 159, 562, 756
DpnI	GATC	2 cut(s)	171, 414
DpnII	GATC	2 cut(s)	169, 412
DraI	TTTAAA	2 cut(s)	378, 831
Eco24I	GRGCYC	2 cut(s)	60, 487
Eco88I	CYCGRG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	652
EcoRII	CCWGG	3 cut(s)	177, 237, 610
EcoT38I	GRGCYC	2 cut(s)	60, 487
FaeI	CATG	5 cut(s)	236, 543, 725, 737, 934
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	5 cut(s)	232, 539, 721, 733, 930
Fnu4HI	GCNGC	2 cut(s)	252, 285
FokI	GGATG	2 cut(s)	194, 826
FriOI	GRGCYC	2 cut(s)	60, 487
Fsp4HI	GCNGC	2 cut(s)	252, 285
FspBI	CTAG	4 cut(s)	144, 468, 642, 946
GluI	GCNGC	2 cut(s)	252, 285
HaeIII	GGCC	2 cut(s)	476, 654
Hin1II	CATG	5 cut(s)	236, 543, 725, 737, 934
HindIII	AAGCTT	2 cut(s)	372, 568
HinfI	GANTC	3 cut(s)	84, 209, 552
Hpy188I	TCNGA	4 cut(s)	14, 204, 214, 259
Hpy188III	TCNNGA	5 cut(s)	151, 314, 564, 642, 710
HpyAV	CCTTC	4 cut(s)	127, 466, 542, 686
HpyCH4III	ACNGT	3 cut(s)	503, 662, 686
HpyCH4V	TGCA	6 cut(s)	287, 347, 443, 506, 518, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 482
HpyF3I	CTNAG	4 cut(s)	11, 159, 562, 756
Hsp92II	CATG	5 cut(s)	236, 543, 725, 737, 934
Kzo9I	GATC	2 cut(s)	169, 412
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	2 cut(s)	263, 890
MaeI	CTAG	4 cut(s)	144, 468, 642, 946
MaeIII	GTNAC	1 cut(s)	690
MalI	GATC	2 cut(s)	171, 414
MboI	GATC	2 cut(s)	169, 412
MboII	GAAGA	6 cut(s)	547, 550, 709, 793, 850, 916
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	2 cut(s)	60, 487
MluCI	AATT	8 cut(s)	277, 309, 444, 508, 726, 747, 844, 916
MlyI	GAGTC	1 cut(s)	203
MroXI	GAANNNNTTC	2 cut(s)	453, 717
MseI	TTAA	4 cut(s)	377, 591, 705, 830
MspR9I	CCNGG	3 cut(s)	179, 239, 612
MunI	CAATTG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	3 cut(s)	179, 239, 612
MwoI	GCNNNNNNNGC	2 cut(s)	248, 482
NdeII	GATC	2 cut(s)	169, 412
NlaIII	CATG	5 cut(s)	236, 543, 725, 737, 934
NlaIV	GGNNCC	2 cut(s)	57, 414
NspI	RCATGY	1 cut(s)	543
PctI	GAATGC	1 cut(s)	326
PdmI	GAANNNNTTC	2 cut(s)	453, 717
PfeI	GAWTC	2 cut(s)	84, 552
PflMI	CCANNNNNTGG	2 cut(s)	238, 585
PkrI	GCNGC	2 cut(s)	253, 286
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	227
Psp6I	CCWGG	3 cut(s)	177, 237, 610
PspGI	CCWGG	3 cut(s)	177, 237, 610
PspN4I	GGNNCC	2 cut(s)	57, 414
PspPI	GGNCC	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	4 cut(s)	128, 186, 683, 788
RsaNI	GTAC	4 cut(s)	127, 185, 682, 787
SaqAI	TTAA	4 cut(s)	377, 591, 705, 830
SatI	GCNGC	2 cut(s)	252, 285
Sau3AI	GATC	2 cut(s)	169, 412
Sau96I	GGNCC	1 cut(s)	652
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	3 cut(s)	179, 239, 612
SduI	GDGCHC	2 cut(s)	60, 487
SetI	ASST	9 cut(s)	107, 168, 345, 376, 572, 616, 636, 742, 775
SfaNI	GCATC	2 cut(s)	263, 890
Sse9I	AATT	8 cut(s)	277, 309, 444, 508, 726, 747, 844, 916
SsiI	CCGC	1 cut(s)	252
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	4 cut(s)	144, 468, 642, 946
StyD4I	CCNGG	3 cut(s)	177, 237, 610
TaaI	ACNGT	3 cut(s)	503, 662, 686
TaqI	TCGA	2 cut(s)	744, 893
TasI	AATT	8 cut(s)	277, 309, 444, 508, 726, 747, 844, 916
TatI	WGTACW	4 cut(s)	126, 184, 681, 786
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	84, 552
Tru1I	TTAA	4 cut(s)	377, 591, 705, 830
Tru9I	TTAA	4 cut(s)	377, 591, 705, 830
TscAI	CASTG	3 cut(s)	197, 508, 665
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	5 cut(s)	33, 350, 710, 750, 811
TspRI	CASTG	3 cut(s)	197, 508, 665
Van91I	CCANNNNNTGG	2 cut(s)	238, 585
XapI	RAATTY	5 cut(s)	277, 309, 508, 844, 916
XbaI	TCTAGA	1 cut(s)	641
XceI	RCATGY	1 cut(s)	543
XmnI	GAANNNNTTC	2 cut(s)	453, 717
XspI	CTAG	4 cut(s)	144, 468, 642, 946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.