Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Forward (+)

15640786 .. 15645376

Gene Structure 4591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1182500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGTTCTTTGGAAAATGGGAGACAGAGAGCAAGTGGAGAAGGAGCAGAGCAGGAGGAGGAGCCGATATTAATGGAGCAGACGCAGAGGTTCTGCATGTTTCCTGTTCGTTACAAGCAAGTCTGGGAGATGTACAAGAAGGCCGTGGCCAGTTTCTGGACTGCTGAGGAGGTTGATCTCTCCCATGATATACAGCAGTGGGACGCTTTGTCTGACTCTGAAAGACACTTTGTAAGCCATGTCCTTGCATTTTTTGCCGCATCTGATGGGATTGTTTTGGAGAATTTGGCTGCAAGATTTCTAACTGATGTTCAGATTCCAGAGGCTCGGGCATTCTATGGATTTCAACTTGCAATGGAGAATATCCATTCGGAGATGTACAGCTTGCTTTTGGAGACATACATCAAGGATTCTACGGAGAAGCATAGATTGTTCAATGCAATTGAAAGCATTCCTTGTGTGTCTAAGAAGGCTAAGTGGGCTTTGGATTGGATACACAGTTCCAATTCATTTGCGGAGAGACTTGTTGCTTTTGCGTGTGTTGAAGGAATCTTTTTCTCCGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGGGGACTAATGCCCGGGTTGACATTCTCAAACGAGCTTATATCTAGAGATGAGGGTCTTCACTGTGATTTTGCTTGCCTTTTGTACAGTTTGTTGCAGAAGCAACTAAATTGGGAAAAAGTTCACGGAATTATAAATGAAGCTGTCGAGATTGAGACTGAATTTGTTTGTGAGGCCCTCCCATGCGCATTGATTGGCATGAACTCCGATCTTATGAGCCAGTACATAAAATATGTTGCTGATCGACTCTTGGTTGCGTTAGGTTGTCAGAGGAAGTACAATGTCAAAAATCCTTTTGACTGGATGGAGTTTATTTCTTTGCAAGGAAAGACGAACTTTTTCGAGAGAAGGGTCGGTGACTATCAAAAAGCATCTGTTATGTCAGGCCTTCAAGATGGTGGCAAAAATTTCATCTTCAAGTTGGACGCCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

344

Amino Acids

39.35

Weight (kDa)

5.17

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	30 - 296	3e-116	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	728
Acc16I	TGCGCA	1 cut(s)	781
AccB7I	CCANNNNNTGG	2 cut(s)	156, 582
AccIII	TCCGGA	1 cut(s)	560
AciI	CCGC	2 cut(s)	258, 515
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	283, 755, 1000
AcyI	GRCGYC	1 cut(s)	1020
AfaI	GTAC	5 cut(s)	134, 380, 680, 818, 872
AfiI	CCNNNNNNNGG	2 cut(s)	156, 582
AgsI	TTSAA	6 cut(s)	347, 436, 446, 545, 986, 1012
AhdI	GACNNNNNGTC	1 cut(s)	208
AloI	GAACNNNNNNTCC	2 cut(s)	484, 516
AluBI	AGCT	4 cut(s)	384, 567, 631, 737
AluI	AGCT	4 cut(s)	384, 567, 631, 737
Alw26I	GTCTC	4 cut(s)	16, 389, 514, 743
AlwNI	CAGNNNCTG	1 cut(s)	156
Ama87I	CYCGRG	2 cut(s)	327, 608
Aor13HI	TCCGGA	1 cut(s)	560
AoxI	GGCC	4 cut(s)	141, 147, 768, 979
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	3 cut(s)	283, 755, 1000
AseI	ATTAAT	1 cut(s)	71
Asp700I	GAANNNNTTC	3 cut(s)	450, 714, 932
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	1 cut(s)	769
AsuC2I	CCSGG	2 cut(s)	609, 610
AsuHPI	GGTGA	1 cut(s)	962
AvaI	CYCGRG	2 cut(s)	327, 608
BalI	TGGCCA	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	644
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	3 cut(s)	260, 892, 983
BceAI	ACGGC	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	486
BcnI	CCSGG	2 cut(s)	609, 610
BcoDI	GTCTC	4 cut(s)	16, 389, 514, 743
BfaI	CTAG	2 cut(s)	639, 1030
BfuI	GTATCC	1 cut(s)	486
BisI	GCNGC	2 cut(s)	258, 291
BlsI	GCNGC	2 cut(s)	259, 292
Bme1390I	CCNGG	2 cut(s)	609, 610
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmeT110I	CYCGRG	2 cut(s)	327, 608
BmgT120I	GGNCC	1 cut(s)	769
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	2 cut(s)	609, 610
BmsI	GCATC	2 cut(s)	269, 974
BpiI	GAAGAC	1 cut(s)	644
Bpu10I	CCTNAGC	1 cut(s)	165
BpuMI	CCSGG	2 cut(s)	609, 610
BsaHI	GRCGYC	1 cut(s)	1020
BsaJI	CCNNGG	2 cut(s)	144, 608
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 582
Bse1I	ACTGG	3 cut(s)	150, 814, 899
Bse3DI	GCAATG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	560
BseDI	CCNNGG	2 cut(s)	144, 608
BseGI	GGATG	1 cut(s)	903
BseLI	CCNNNNNNNGG	2 cut(s)	156, 582
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	3 cut(s)	150, 814, 899
BseRI	GAGGAG	3 cut(s)	71, 74, 182
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	4 cut(s)	143, 149, 770, 981
BsiHKCI	CYCGRG	2 cut(s)	327, 608
BsiSI	CCGG	2 cut(s)	561, 609
BslFI	GGGAC	2 cut(s)	215, 612
BslI	CCNNNNNNNGG	2 cut(s)	156, 582
BsmAI	GTCTC	4 cut(s)	16, 389, 514, 743
BsmFI	GGGAC	2 cut(s)	215, 612
BsmI	GAATGC	2 cut(s)	332, 450
BsnI	GGCC	4 cut(s)	143, 149, 770, 981
BsoBI	CYCGRG	2 cut(s)	327, 608
Bsp13I	TCCGGA	1 cut(s)	560
Bsp1407I	TGTACA	3 cut(s)	132, 378, 678
Bsp143I	GATC	3 cut(s)	175, 802, 835
BspACI	CCGC	2 cut(s)	258, 515
BspANI	GGCC	4 cut(s)	143, 149, 770, 981
BspCNI	CTCAG	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	560
BspLI	GGNNCC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	360
BsrGI	TGTACA	3 cut(s)	132, 378, 678
BsrI	ACTGG	3 cut(s)	150, 814, 899
BssECI	CCNNGG	2 cut(s)	144, 608
BssMI	GATC	3 cut(s)	175, 802, 835
BssNI	GRCGYC	1 cut(s)	1020
Bst4CI	ACNGT	3 cut(s)	500, 659, 683
BstACI	GRCGYC	1 cut(s)	1020
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstAUI	TGTACA	3 cut(s)	132, 378, 678
BstC8I	GCNNGC	2 cut(s)	386, 670
BstDEI	CTNAG	3 cut(s)	165, 465, 474
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	903
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	3 cut(s)	178, 805, 838
BstMAI	GTCTC	4 cut(s)	16, 389, 514, 743
BstMBI	GATC	3 cut(s)	175, 802, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 479
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	607, 608
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	644
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	4 cut(s)	143, 149, 770, 981
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	903
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	203, 655
Cac8I	GCNNGC	2 cut(s)	386, 670
CaiI	CAGNNNCTG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	1 cut(s)	769
Cfr9I	CCCGGG	1 cut(s)	608
CseI	GACGC	2 cut(s)	91, 212
Csp6I	GTAC	5 cut(s)	133, 379, 679, 817, 871
CviAII	CATG	5 cut(s)	97, 185, 239, 777, 793
CviQI	GTAC	5 cut(s)	133, 379, 679, 817, 871
DdeI	CTNAG	3 cut(s)	165, 465, 474
DpnI	GATC	3 cut(s)	177, 804, 837
DpnII	GATC	3 cut(s)	175, 802, 835
DriI	GACNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	147
Eam1105I	GACNNNNNGTC	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	981
Eco88I	CYCGRG	2 cut(s)	327, 608
EcoO109I	RGGNCCY	1 cut(s)	769
FaeI	CATG	5 cut(s)	100, 188, 242, 780, 796
FalI	AAGNNNNNCTT	4 cut(s)	439, 471, 914, 946
FaqI	GGGAC	2 cut(s)	215, 612
FatI	CATG	5 cut(s)	96, 184, 238, 776, 792
Fnu4HI	GCNGC	2 cut(s)	258, 291
FokI	GGATG	1 cut(s)	910
Fsp4HI	GCNGC	2 cut(s)	258, 291
FspAI	RTGCGCAY	1 cut(s)	781
FspBI	CTAG	2 cut(s)	639, 1030
FspI	TGCGCA	1 cut(s)	781
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	2 cut(s)	258, 291
HaeIII	GGCC	4 cut(s)	143, 149, 770, 981
HapII	CCGG	2 cut(s)	561, 609
HgaI	GACGC	2 cut(s)	91, 212
HhaI	GCGC	1 cut(s)	782
Hin1I	GRCGYC	1 cut(s)	1020
Hin1II	CATG	5 cut(s)	100, 188, 242, 780, 796
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HindIII	AAGCTT	1 cut(s)	565
HinfI	GANTC	5 cut(s)	215, 316, 410, 549, 840
HpaII	CCGG	2 cut(s)	561, 609
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	2 cut(s)	615, 718
Hpy188I	TCNGA	7 cut(s)	214, 220, 265, 315, 373, 802, 864
Hpy188III	TCNNGA	7 cut(s)	157, 320, 561, 639, 742, 937, 986
Hpy8I	GTNNAC	2 cut(s)	615, 718
HpyAV	CCTTC	6 cut(s)	35, 133, 463, 539, 936, 992
HpyCH4III	ACNGT	3 cut(s)	500, 659, 683
HpyCH4V	TGCA	7 cut(s)	96, 248, 293, 353, 440, 691, 916
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 479
HpyF3I	CTNAG	3 cut(s)	165, 465, 474
Hsp92I	GRCGYC	1 cut(s)	1020
Hsp92II	CATG	5 cut(s)	100, 188, 242, 780, 796
HspAI	GCGC	1 cut(s)	780
Kpn2I	TCCGGA	1 cut(s)	560
Kzo9I	GATC	3 cut(s)	175, 802, 835
LmnI	GCTCC	3 cut(s)	44, 61, 76
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	269, 974
MaeI	CTAG	2 cut(s)	639, 1030
MaeIII	GTNAC	2 cut(s)	110, 950
MalI	GATC	3 cut(s)	177, 804, 837
MboI	GATC	3 cut(s)	175, 802, 835
MboII	GAAGA	2 cut(s)	644, 1000
MfeI	CAATTG	1 cut(s)	441
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	7 cut(s)	283, 441, 505, 703, 723, 755, 1000
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	209, 834
MmeI	TCCRAC	1 cut(s)	996
Mox20I	TGGCCA	1 cut(s)	149
MroI	TCCGGA	1 cut(s)	560
MroXI	GAANNNNTTC	3 cut(s)	450, 714, 932
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	2 cut(s)	71, 588
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	2 cut(s)	561, 609
MspR9I	CCNGG	2 cut(s)	609, 610
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	2 cut(s)	332, 450
MwoI	GCNNNNNNNGC	2 cut(s)	254, 479
NciI	CCSGG	2 cut(s)	609, 610
NdeII	GATC	3 cut(s)	175, 802, 835
NlaIII	CATG	5 cut(s)	100, 188, 242, 780, 796
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	950
NsbI	TGCGCA	1 cut(s)	781
NspI	RCATGY	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	981
PctI	GAATGC	2 cut(s)	332, 450
PdmI	GAANNNNTTC	3 cut(s)	450, 714, 932
PfeI	GAWTC	3 cut(s)	316, 410, 549
PflMI	CCANNNNNTGG	2 cut(s)	156, 582
PkrI	GCNGC	2 cut(s)	259, 292
PleI	GAGTC	2 cut(s)	209, 834
PpsI	GAGTC	2 cut(s)	209, 834
PshBI	ATTAAT	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	728
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	769
PstNI	CAGNNNCTG	1 cut(s)	156
RsaI	GTAC	5 cut(s)	134, 380, 680, 818, 872
RsaNI	GTAC	5 cut(s)	133, 379, 679, 817, 871
SaqAI	TTAA	2 cut(s)	71, 588
SatI	GCNGC	2 cut(s)	258, 291
Sau3AI	GATC	3 cut(s)	175, 802, 835
Sau96I	GGNCC	1 cut(s)	769
SchI	GAGTC	2 cut(s)	209, 834
ScrFI	CCNGG	2 cut(s)	609, 610
SetI	ASST	7 cut(s)	92, 174, 386, 569, 633, 739, 859
SfaNI	GCATC	2 cut(s)	269, 974
SmaI	CCCGGG	1 cut(s)	610
Sse9I	AATT	7 cut(s)	283, 441, 505, 703, 723, 755, 1000
SseBI	AGGCCT	1 cut(s)	981
SsiI	CCGC	2 cut(s)	258, 515
SspMI	CTAG	2 cut(s)	639, 1030
StuI	AGGCCT	1 cut(s)	981
StyD4I	CCNGG	2 cut(s)	607, 608
TaaI	ACNGT	3 cut(s)	500, 659, 683
TaqI	TCGA	3 cut(s)	741, 838, 936
TasI	AATT	7 cut(s)	283, 441, 505, 703, 723, 755, 1000
TatI	WGTACW	5 cut(s)	132, 378, 678, 816, 870
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	3 cut(s)	316, 410, 549
Tru1I	TTAA	2 cut(s)	71, 588
Tru9I	TTAA	2 cut(s)	71, 588
TscAI	CASTG	2 cut(s)	203, 662
TseFI	GTSAC	1 cut(s)	950
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	950
TspDTI	ATGAA	4 cut(s)	498, 747, 809, 994
TspGWI	ACGGA	2 cut(s)	431, 735
TspMI	CCCGGG	1 cut(s)	608
TspRI	CASTG	2 cut(s)	203, 662
Van91I	CCANNNNNTGG	2 cut(s)	156, 582
VspI	ATTAAT	1 cut(s)	71
XapI	RAATTY	3 cut(s)	283, 755, 1000
XbaI	TCTAGA	1 cut(s)	638
XceI	RCATGY	1 cut(s)	100
XmaI	CCCGGG	1 cut(s)	608
XmnI	GAANNNNTTC	3 cut(s)	450, 714, 932
XspI	CTAG	2 cut(s)	639, 1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.