Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Forward (+)

11252074 .. 11256031

Gene Structure 3958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15320.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGTTCTTTGGGAAATGGGAGAGAGAGAGCAAATGGAGAGAAAGGAGCAGAGCAGGAGGAGGAGGAGGAGCCGATATTAATGGAGCAGACGCAGAGGTTCTGTATGTTTCCTGTTCGGTACAAGCAAGTCTGGGAGATGTACAAGAAGGCCGTGGCCAGTTTCTGGACTGCTGAGGAGGTTGATCTCTCCCATGATATACAGCAGTGGGACACTTTGTCTGACTCTGAAAGACACTTTATAAGCCATGTCCTTGCATTTTTTGCTGCATCTGATGGGATTGTTTTGGAGAATTTGGCTGCAAGATTTCTAACTGATGTTCAGATTCCAGAGGCTCGGGCATTCTATGGATTTCAACTTGCAATGGAGAATATCCATTCGGAGATGTACAGCTTGCTTTTGGAGACATACATCAAGGATTCTACGGAGAAGCATAGATTGTTCAATGCAATTGAAAGCATTCCTTGTGTGTCTAAGAAGGCTAAGTGGGCTTTGGATTGGATAGACAGTTCCAATTCATTTGCGGAGAGACTTGTTGCTTTTGCGTGTGTTGAAGGAATCTTTTTCTCCGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGGGGACTAATGCCTGGGTTGACATTCTCAAACGAGCTTATATCTAGAGATGAGGGTCTTCACTGTGATTTTGCTTGCCTTTTGTACAGTTTGTTGCAGAAGCAACTAAATTGGGAAAAAGTTCATGGAATTATAAATGAAGCTGTCGAGATTGAGACTCAATTTGTTTGTGAGGCCCTCCCATGCGCATTGATTGGCATGAACTCAGATCTTATGAGCCAGTACATAAAATATGTTGCTGATCGACTCTTGGTTGCGTTAGATTGTCAGAGGAAGTACAATGTCAAAAATCCTTTTGACTGGATGGAGTTTATTTCTTTGCAAGGAAAGACGAACTTTTTCGAGAGAAGGGTTGGTGACTATCAAAAAGCATCTGTTATGTCAGGCCTCCAAGATGGTGGCAAAAACTTCATCTTCAAGTTGGACGCCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

347

Amino Acids

39.78

Weight (kDa)

5.01

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	242, 737
Acc16I	TGCGCA	1 cut(s)	790
AccB7I	CCANNNNNTGG	2 cut(s)	165, 591
AccIII	TCCGGA	1 cut(s)	569
AciI	CCGC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	1029
AfaI	GTAC	6 cut(s)	122, 143, 389, 689, 827, 881
AfiI	CCNNNNNNNGG	2 cut(s)	165, 591
AgsI	TTSAA	5 cut(s)	356, 445, 455, 554, 1021
AhdI	GACNNNNNGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	616
AloI	GAACNNNNNNTCC	2 cut(s)	493, 525
AluBI	AGCT	4 cut(s)	393, 576, 640, 746
AluI	AGCT	4 cut(s)	393, 576, 640, 746
Alw26I	GTCTC	3 cut(s)	398, 523, 752
AlwNI	CAGNNNCTG	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	569
AoxI	GGCC	4 cut(s)	150, 156, 777, 988
ApeKI	GCWGC	2 cut(s)	266, 299
ApoI	RAATTY	1 cut(s)	292
AseI	ATTAAT	1 cut(s)	80
Asp700I	GAANNNNTTC	3 cut(s)	459, 723, 941
AspLEI	GCGC	1 cut(s)	791
AspS9I	GGNCC	1 cut(s)	778
AsuHPI	GGTGA	1 cut(s)	971
AvaI	CYCGRG	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	653
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	253, 286
BccI	CCATC	3 cut(s)	269, 901, 992
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	618
BcoDI	GTCTC	3 cut(s)	398, 523, 752
BfaI	CTAG	2 cut(s)	648, 1039
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	2 cut(s)	267, 300
BlsI	GCNGC	2 cut(s)	268, 301
Bme1390I	CCNGG	1 cut(s)	618
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	2 cut(s)	278, 983
BpiI	GAAGAC	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	1029
BsaJI	CCNNGG	2 cut(s)	153, 617
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 591
Bse1I	ACTGG	3 cut(s)	159, 823, 908
Bse3DI	GCAATG	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	569
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	153, 617
BseGI	GGATG	1 cut(s)	912
BseLI	CCNNNNNNNGG	2 cut(s)	165, 591
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	165, 822
BseNI	ACTGG	3 cut(s)	159, 823, 908
BseRI	GAGGAG	5 cut(s)	74, 77, 80, 83, 191
BseXI	GCAGC	2 cut(s)	253, 286
BshFI	GGCC	4 cut(s)	152, 158, 779, 990
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	570
BslFI	GGGAC	2 cut(s)	224, 621
BslI	CCNNNNNNNGG	2 cut(s)	165, 591
BsmAI	GTCTC	3 cut(s)	398, 523, 752
BsmFI	GGGAC	2 cut(s)	224, 621
BsmI	GAATGC	2 cut(s)	341, 459
BsnI	GGCC	4 cut(s)	152, 158, 779, 990
BsoBI	CYCGRG	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	569
Bsp1407I	TGTACA	3 cut(s)	141, 387, 687
Bsp143I	GATC	3 cut(s)	184, 811, 844
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	4 cut(s)	152, 158, 779, 990
BspCNI	CTCAG	2 cut(s)	166, 821
BspEI	TCCGGA	1 cut(s)	569
BspLI	GGNNCC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	369
BsrGI	TGTACA	3 cut(s)	141, 387, 687
BsrI	ACTGG	3 cut(s)	159, 823, 908
BssECI	CCNNGG	2 cut(s)	153, 617
BssMI	GATC	3 cut(s)	184, 811, 844
BssNI	GRCGYC	1 cut(s)	1029
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	3 cut(s)	509, 668, 692
BstACI	GRCGYC	1 cut(s)	1029
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	3 cut(s)	141, 387, 687
BstC8I	GCNNGC	2 cut(s)	395, 679
BstDEI	CTNAG	4 cut(s)	174, 474, 483, 808
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	912
BstHHI	GCGC	1 cut(s)	791
BstKTI	GATC	3 cut(s)	187, 814, 847
BstMAI	GTCTC	3 cut(s)	398, 523, 752
BstMBI	GATC	3 cut(s)	184, 811, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 488
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	253, 286
BstV2I	GAAGAC	1 cut(s)	653
BstX2I	RGATCY	1 cut(s)	811
BstXI	CCANNNNNNTGG	1 cut(s)	1001
BstYI	RGATCY	1 cut(s)	811
BsuRI	GGCC	4 cut(s)	152, 158, 779, 990
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	912
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	212, 664
Cac8I	GCNNGC	2 cut(s)	395, 679
CaiI	CAGNNNCTG	1 cut(s)	165
CfoI	GCGC	1 cut(s)	791
Cfr13I	GGNCC	1 cut(s)	778
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	6 cut(s)	121, 142, 388, 688, 826, 880
CviAII	CATG	5 cut(s)	194, 248, 728, 786, 802
CviQI	GTAC	6 cut(s)	121, 142, 388, 688, 826, 880
DdeI	CTNAG	4 cut(s)	174, 474, 483, 808
DpnI	GATC	3 cut(s)	186, 813, 846
DpnII	GATC	3 cut(s)	184, 811, 844
DriI	GACNNNNNGTC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	156
Eam1105I	GACNNNNNGTC	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	990
Eco88I	CYCGRG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	616
FaeI	CATG	5 cut(s)	197, 251, 731, 789, 805
FalI	AAGNNNNNCTT	4 cut(s)	448, 480, 923, 955
FaqI	GGGAC	2 cut(s)	224, 621
FatI	CATG	5 cut(s)	193, 247, 727, 785, 801
Fnu4HI	GCNGC	2 cut(s)	267, 300
FokI	GGATG	1 cut(s)	919
Fsp4HI	GCNGC	2 cut(s)	267, 300
FspAI	RTGCGCAY	1 cut(s)	790
FspBI	CTAG	2 cut(s)	648, 1039
FspI	TGCGCA	1 cut(s)	790
GlaI	GCGC	1 cut(s)	790
GluI	GCNGC	2 cut(s)	267, 300
HaeIII	GGCC	4 cut(s)	152, 158, 779, 990
HapII	CCGG	1 cut(s)	570
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	791
Hin1I	GRCGYC	1 cut(s)	1029
Hin1II	CATG	5 cut(s)	197, 251, 731, 789, 805
Hin6I	GCGC	1 cut(s)	789
HinP1I	GCGC	1 cut(s)	789
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	6 cut(s)	224, 325, 419, 558, 760, 849
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	1 cut(s)	971
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	7 cut(s)	223, 229, 274, 324, 382, 811, 873
Hpy188III	TCNNGA	6 cut(s)	166, 329, 570, 648, 751, 946
Hpy8I	GTNNAC	1 cut(s)	624
HpyAV	CCTTC	4 cut(s)	142, 472, 548, 945
HpyCH4III	ACNGT	3 cut(s)	509, 668, 692
HpyCH4V	TGCA	7 cut(s)	257, 269, 302, 362, 449, 700, 925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 488
HpyF3I	CTNAG	4 cut(s)	174, 474, 483, 808
Hsp92I	GRCGYC	1 cut(s)	1029
Hsp92II	CATG	5 cut(s)	197, 251, 731, 789, 805
HspAI	GCGC	1 cut(s)	789
Kpn2I	TCCGGA	1 cut(s)	569
Kzo9I	GATC	3 cut(s)	184, 811, 844
LmnI	GCTCC	3 cut(s)	47, 70, 85
Lsp1109I	GCAGC	2 cut(s)	253, 286
LweI	GCATC	2 cut(s)	278, 983
MaeI	CTAG	2 cut(s)	648, 1039
MaeIII	GTNAC	1 cut(s)	959
MalI	GATC	3 cut(s)	186, 813, 846
MboI	GATC	3 cut(s)	184, 811, 844
MboII	GAAGA	2 cut(s)	653, 1009
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	1 cut(s)	811
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	6 cut(s)	292, 450, 514, 712, 732, 764
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	3 cut(s)	218, 754, 843
MmeI	TCCRAC	1 cut(s)	1005
Mox20I	TGGCCA	1 cut(s)	158
MroI	TCCGGA	1 cut(s)	569
MroXI	GAANNNNTTC	3 cut(s)	459, 723, 941
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	2 cut(s)	80, 597
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	2 cut(s)	341, 459
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	2 cut(s)	263, 488
NdeII	GATC	3 cut(s)	184, 811, 844
NlaIII	CATG	5 cut(s)	197, 251, 731, 789, 805
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	959
NsbI	TGCGCA	1 cut(s)	790
PceI	AGGCCT	1 cut(s)	990
PctI	GAATGC	2 cut(s)	341, 459
PdmI	GAANNNNTTC	3 cut(s)	459, 723, 941
PfeI	GAWTC	3 cut(s)	325, 419, 558
PflMI	CCANNNNNTGG	2 cut(s)	165, 591
PkrI	GCNGC	2 cut(s)	268, 301
PleI	GAGTC	3 cut(s)	218, 754, 843
PpsI	GAGTC	3 cut(s)	218, 754, 843
PshBI	ATTAAT	1 cut(s)	80
PsiI	TTATAA	2 cut(s)	242, 737
Psp6I	CCWGG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	6 cut(s)	122, 143, 389, 689, 827, 881
RsaNI	GTAC	6 cut(s)	121, 142, 388, 688, 826, 880
SaqAI	TTAA	2 cut(s)	80, 597
SatI	GCNGC	2 cut(s)	267, 300
Sau3AI	GATC	3 cut(s)	184, 811, 844
Sau96I	GGNCC	1 cut(s)	778
SchI	GAGTC	3 cut(s)	218, 754, 843
ScrFI	CCNGG	1 cut(s)	618
SetI	ASST	6 cut(s)	101, 183, 395, 578, 642, 748
SfaNI	GCATC	2 cut(s)	278, 983
Sse9I	AATT	6 cut(s)	292, 450, 514, 712, 732, 764
SseBI	AGGCCT	1 cut(s)	990
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	2 cut(s)	648, 1039
StuI	AGGCCT	1 cut(s)	990
StyD4I	CCNGG	1 cut(s)	616
TaaI	ACNGT	3 cut(s)	509, 668, 692
TaqI	TCGA	3 cut(s)	750, 847, 945
TasI	AATT	6 cut(s)	292, 450, 514, 712, 732, 764
TatI	WGTACW	5 cut(s)	141, 387, 687, 825, 879
TfiI	GAWTC	3 cut(s)	325, 419, 558
Tru1I	TTAA	2 cut(s)	80, 597
Tru9I	TTAA	2 cut(s)	80, 597
TscAI	CASTG	2 cut(s)	212, 671
TseFI	GTSAC	1 cut(s)	959
TseI	GCWGC	2 cut(s)	266, 299
Tsp45I	GTSAC	1 cut(s)	959
TspDTI	ATGAA	5 cut(s)	507, 716, 756, 818, 1003
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	212, 671
Van91I	CCANNNNNTGG	2 cut(s)	165, 591
VspI	ATTAAT	1 cut(s)	80
XapI	RAATTY	1 cut(s)	292
XbaI	TCTAGA	1 cut(s)	647
XmnI	GAANNNNTTC	3 cut(s)	459, 723, 941
XspI	CTAG	2 cut(s)	648, 1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.