AT3G23710

Tic22-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007361
Physical Location & Seq
Forward (+)
8533848 .. 8536541
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23710.2

Sequence Viewer

Length: 942 bp
ATGAATTCAAACATTTTCCCACCATCGAAACAACAAAACGAGCTTAATAATATACAACAATCCTTCTCAAATCTCCAATCTCAATGCTCCAATTTACTCCTCAACGTTTCACAAACCCTTAATCCTCTCTTCAACGCCAACACGAACAACAACAAACCTAATATATTCTCTGCTCTCAATTCGTTTCGTGATCAAGCTAAGCAAGCTTTAGATTCTAGAATCTCTCGATTCAATTCTGGTAAGGCACCTGTCTGGGCGAGAATTTCTGACGACGGTGGTGGTGCGAGGGCTCAGGTGACGGTTCCGATTCGCGGAAGCGGGAAAGGATTATCTGCTGATGCTATTGAGGAGAGATTGGCGGGAGTTCCTGTTTACGCGTTGAGTAATTCGAATGAGGAGTTTGTGTTGGTTTCAGGGACTTCCTCTGGGAAATCTCTGGGTTTGTTGTTTTGTAAAGAGGAAGATGCAGAGACTCTTCTTAAAGAGATGAAGAGTATGGATCCTCGTATGAGGAAAGAAGGTTCAAAAGTTGTTGCTCTTGCTCTTAGCAAGGTGTTCCAGTTAAAAGTTAATGGTGTGGCATTTAGGTTGATTCCTGAGTCTACTCAAGTGAAAAATGCCTTGAAGGAAAGGAAAACAGCTGGTATCGATGATGATGACTTCCATGGTGTTCCGGTTTTCCAGTCAAAGAGCTTGATTCTACGAAGTGAAAACATGAGTTATCGCCCTGTTTTCTTTAGAAAGGAGGACTTGGAAAAATCTCTAATACGAGCGTCCAGCCAACAGAACCGACTTAACCCTGCTCTGAAACCAGGCGATATTCAGGTTGCAGTTTTCGAAGATATTGTCAAGGGAATGAGGGAAAGCACGACGTCAAACTGGGACGACATTGTGTTTATACCGCCTGGTTTTGAGGTTTCAACTGAGCAAACACAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tic22

Protein Analysis

313

Amino Acids

34.57

Weight (kDa)

8.43

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tic22 PF04278 56 - 248 1.5e-77 Tic22-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 875
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 602
AccII CGCG 2 cut(s) 312, 377
AciI CCGC 4 cut(s) 312, 318, 359, 902
AclI AACGTT 1 cut(s) 105
AclWI GGATC 2 cut(s) 494, 507
AcsI RAATTY 2 cut(s) 4, 261
AcyI GRCGYC 1 cut(s) 872
AfiI CCNNNNNNNGG 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 6 cut(s) 9, 133, 232, 525, 625, 921
AjnI CCWGG 2 cut(s) 811, 904
AloI GAACNNNNNNTCC 2 cut(s) 505, 537
AluBI AGCT 5 cut(s) 43, 197, 206, 641, 693
AluI AGCT 5 cut(s) 43, 197, 206, 641, 693
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 2 cut(s) 494, 507
ApoI RAATTY 2 cut(s) 4, 261
ArsI GACNNNNNNTTYG 2 cut(s) 831, 863
AsuHPI GGTGA 1 cut(s) 307
AsuII TTCGAA 2 cut(s) 389, 837
BamHI GGATCC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 292
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 813, 906
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 1 cut(s) 216
BlpI GCTNAGC 1 cut(s) 198
Bme1390I CCNGG 2 cut(s) 813, 906
BmiI GGNNCC 3 cut(s) 246, 303, 501
BmrFI CCNGG 2 cut(s) 813, 906
BmrI ACTGGG 1 cut(s) 889
BmsI GCATC 2 cut(s) 328, 454
BmuI ACTGGG 1 cut(s) 889
Bpu10I CCTNAGC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 198
Bpu14I TTCGAA 2 cut(s) 389, 837
BpuEI CTTGAG 1 cut(s) 591
Bsa29I ATCGAT 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 872
BsaJI CCNNGG 1 cut(s) 664
BsaWI WCCGGW 1 cut(s) 673
BsaXI ACNNNNNCTCC 4 cut(s) 354, 384, 389, 419
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 3 cut(s) 559, 682, 884
BseBI CCWGG 2 cut(s) 813, 906
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 1 cut(s) 664
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMII CTCAG 3 cut(s) 305, 588, 915
BseNI ACTGG 3 cut(s) 559, 682, 884
BseRI GAGGAG 3 cut(s) 89, 362, 410
Bsh1236I CGCG 2 cut(s) 312, 377
BshNI GGYRCC 1 cut(s) 244
BshVI ATCGAT 1 cut(s) 648
BsiSI CCGG 1 cut(s) 674
BslFI GGGAC 2 cut(s) 430, 896
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 430, 896
Bsp119I TTCGAA 2 cut(s) 389, 837
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 2 cut(s) 190, 499
Bsp1720I GCTNAGC 1 cut(s) 198
Bsp19I CCATGG 1 cut(s) 664
BspACI CCGC 4 cut(s) 312, 318, 359, 902
BspCNI CTCAG 3 cut(s) 304, 589, 916
BspDI ATCGAT 1 cut(s) 648
BspFNI CGCG 2 cut(s) 312, 377
BspLI GGNNCC 3 cut(s) 246, 303, 501
BspPI GGATC 2 cut(s) 494, 507
BspT104I TTCGAA 2 cut(s) 389, 837
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 3 cut(s) 559, 682, 884
BssECI CCNNGG 1 cut(s) 664
BssMI GATC 2 cut(s) 190, 499
BssNI GRCGYC 1 cut(s) 872
BssT1I CCWWGG 1 cut(s) 664
Bst2UI CCWGG 2 cut(s) 813, 906
Bst4CI ACNGT 2 cut(s) 275, 301
Bst6I CTCTTC 3 cut(s) 134, 480, 485
BstACI GRCGYC 1 cut(s) 872
BstBI TTCGAA 2 cut(s) 389, 837
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 5 cut(s) 198, 291, 545, 597, 924
BstDSI CCRYGG 1 cut(s) 664
BstFNI CGCG 2 cut(s) 312, 377
BstKTI GATC 2 cut(s) 193, 502
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 2 cut(s) 190, 499
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 2 cut(s) 813, 906
BstSCI CCNGG 2 cut(s) 811, 904
BstUI CGCG 2 cut(s) 312, 377
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
Bsu15I ATCGAT 1 cut(s) 648
BsuTUI ATCGAT 1 cut(s) 648
BtgI CCRYGG 1 cut(s) 664
Cac8I GCNNGC 1 cut(s) 204
ClaI ATCGAT 1 cut(s) 648
CseI GACGC 1 cut(s) 762
CviAII CATG 2 cut(s) 665, 715
CviJI RGCY 7 cut(s) 43, 197, 206, 290, 641, 693, 780
CviKI_1 RGCY 7 cut(s) 43, 197, 206, 290, 641, 693, 780
DdeI CTNAG 5 cut(s) 198, 291, 545, 597, 924
DpnI GATC 2 cut(s) 192, 501
DpnII GATC 2 cut(s) 190, 499
Eam1104I CTCTTC 3 cut(s) 134, 480, 485
EarI CTCTTC 3 cut(s) 134, 480, 485
Eco130I CCWWGG 1 cut(s) 664
Eco24I GRGCYC 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 811, 904
EcoT14I CCWWGG 1 cut(s) 664
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 2 cut(s) 668, 718
FaiI YATR 7 cut(s) 53, 164, 497, 509, 666, 716, 899
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FaqI GGGAC 2 cut(s) 430, 896
FatI CATG 2 cut(s) 664, 714
FauI CCCGC 2 cut(s) 311, 352
FbaI TGATCA 1 cut(s) 190
FblI GTMKAC 1 cut(s) 602
FriOI GRGCYC 1 cut(s) 292
FspBI CTAG 1 cut(s) 216
HapII CCGG 1 cut(s) 674
HgaI GACGC 1 cut(s) 762
Hin1I GRCGYC 1 cut(s) 872
Hin1II CATG 2 cut(s) 668, 718
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 8 cut(s) 212, 219, 228, 307, 472, 592, 599, 697
HpaII CCGG 1 cut(s) 674
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 2 cut(s) 373, 603
Hpy188I TCNGA 3 cut(s) 268, 306, 807
Hpy188III TCNNGA 4 cut(s) 188, 216, 225, 596
Hpy8I GTNNAC 2 cut(s) 373, 603
Hpy99I CGWCG 2 cut(s) 275, 874
HpyAV CCTTC 3 cut(s) 73, 512, 619
HpyCH4III ACNGT 2 cut(s) 275, 301
HpyCH4IV ACGT 2 cut(s) 105, 872
HpyCH4V TGCA 2 cut(s) 467, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 5 cut(s) 198, 291, 545, 597, 924
HpySE526I ACGT 2 cut(s) 105, 872
Hsp92I GRCGYC 1 cut(s) 872
Hsp92II CATG 2 cut(s) 668, 718
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 190, 499
LmnI GCTCC 1 cut(s) 92
LweI GCATC 2 cut(s) 328, 454
MaeI CTAG 1 cut(s) 216
MaeII ACGT 2 cut(s) 105, 872
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 192, 501
MboI GATC 2 cut(s) 190, 499
MboII GAAGA 5 cut(s) 121, 467, 473, 502, 851
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 6 cut(s) 4, 91, 178, 232, 261, 385
MluI ACGCGT 1 cut(s) 375
MlyI GAGTC 2 cut(s) 466, 608
MseI TTAA 6 cut(s) 45, 120, 480, 563, 570, 795
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 1 cut(s) 674
MspR9I CCNGG 2 cut(s) 813, 906
MvaI CCWGG 2 cut(s) 813, 906
MvnI CGCG 2 cut(s) 312, 377
MwoI GCNNNNNNNGC 1 cut(s) 203
NcoI CCATGG 1 cut(s) 664
NdeII GATC 2 cut(s) 190, 499
NlaIII CATG 2 cut(s) 668, 718
NlaIV GGNNCC 3 cut(s) 246, 303, 501
NmuCI GTSAC 1 cut(s) 295
NspV TTCGAA 2 cut(s) 389, 837
PfeI GAWTC 6 cut(s) 212, 219, 228, 307, 592, 697
PleI GAGTC 2 cut(s) 466, 607
PpsI GAGTC 2 cut(s) 466, 607
Psp1406I AACGTT 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 811, 904
PspGI CCWGG 2 cut(s) 811, 904
PspN4I GGNNCC 3 cut(s) 246, 303, 501
PsuI RGATCY 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 641
SaqAI TTAA 6 cut(s) 45, 120, 480, 563, 570, 795
Sau3AI GATC 2 cut(s) 190, 499
SchI GAGTC 2 cut(s) 466, 608
ScrFI CCNGG 2 cut(s) 813, 906
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 2 cut(s) 328, 454
SfuI TTCGAA 2 cut(s) 389, 837
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
Sse9I AATT 6 cut(s) 4, 91, 178, 232, 261, 385
SsiI CCGC 4 cut(s) 312, 318, 359, 902
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 811, 904
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 2 cut(s) 275, 301
TaiI ACGT 2 cut(s) 108, 875
TaqI TCGA 5 cut(s) 26, 226, 389, 648, 837
TasI AATT 6 cut(s) 4, 91, 178, 232, 261, 385
TfiI GAWTC 6 cut(s) 212, 219, 228, 307, 592, 697
Tru1I TTAA 6 cut(s) 45, 120, 480, 563, 570, 795
Tru9I TTAA 6 cut(s) 45, 120, 480, 563, 570, 795
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 17, 503
XapI RAATTY 2 cut(s) 4, 261
XbaI TCTAGA 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 602
XspI CTAG 1 cut(s) 216
ZraI GACGTC 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.