Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002136.1

Orthogroup ID

OG0007361

Physical Location & Seq

Genomic Coordinates Reverse (-)

12161 .. 18568

Gene Structure 6408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002136.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgaacttgggcagcgccaataacccaaatgctccctcaccaccaccaccaccacctcaactcaacctccaacaagccttcacctccctccaaacccactgctctggtttcctccaccacctctctcatctccctctcttcaaccccaacgcttcttctctccaaacccacctccaatcatccctctccaacctccaaaaccaagccaaacacgcattccatgccgggttttcgggctttgattcctccaagcagaacccagtttgggctcgaattgctgtaaacaacaaaacccagttcccgaattctagtggcgatgggcccggagctgccatgtcgaccgaggccatcgaggagcggctggccggcgtgccggtctatgctctgagcaatgcggctgaggaattcgtgttggtttcgggtgcttcgagtgggaagagtcttggattgttttgtttcaagaaggaggacgcagagtcactgcttgagcatattagagttatggaccccggaatgcgaagcgggtccaaagttgtggctgtggctttgaataaggtttttcagctcaaggttgatggggtggccttcaggttgattcctgagtcttctcaagtcaagaatgcgcttaaggagaaggagaaggagaagggtggatcttctgataatggcttttttggggtgccagttttccagtcgaggagcttgattctaagaagccaaagcaagagctatcgtccagtatttttcaggaaggaggatttagaaaactcactatcaagagcttctcgtgagcagaatcaattaaatcctttacttagaccaggggacattcaggttgctgttctcgaggatgtaataaaggggatgaaggagggttctacatcggtctgggatgacgttgtttttatccctcctggatttgatatctctactgatcccaccaagcaacaggcagatgctgcaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tic22

Protein Analysis

322

Amino Acids

34.85

Weight (kDa)

7.81

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23710 AT3G23710
fragaria_vesca	FvH4_4g12880 FvH4_4g12880 FvH4_4g12880 FvH4_4g12880 FvH4_4g12880
malus_domestica	MD04G1021300.v1.1
prunus_persica	Prupe.1G170300_v2.0.a1 Prupe.1G170300_v2.0.a1 Prupe.1G170300_v2.0.a1 Prupe.1G170300_v2.0.a1
pyrus_communis	pycom04g01720
rosa_chinensis	RchiOBHm_Chr4g0412551
rosa_multiflora	Rmu_sc0002136.1_g000003
rosa_roxburghii	Rroxscaffold_5G00356770
rosa_rugosa	Rorug04G0103000
rosa_samantha	Rh4AG174200 Rh4BG173400 Rh4CG184900 Rh4DG169500 Rh4DG169700 Rh5BG246100 Rh5DG254700
rosa_wichuraiana	Rw4G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	679
AccBSI	CCGCTC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	338
AciI	CCGC	3 cut(s)	358, 395, 522
AclWI	GGATC	2 cut(s)	661, 929
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	2 cut(s)	304, 404
AcuI	CTGAAG	1 cut(s)	571
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflII	CTTAAG	1 cut(s)	626
AgsI	TTSAA	3 cut(s)	142, 460, 550
AhdI	GACNNNNNGTC	1 cut(s)	475
AjnI	CCWGG	2 cut(s)	820, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	5 cut(s)	329, 565, 702, 729, 782
AluI	AGCT	5 cut(s)	329, 565, 702, 729, 782
AlwI	GGATC	2 cut(s)	661, 929
AlwNI	CAGNNNCTG	1 cut(s)	959
Ama87I	CYCGRG	1 cut(s)	845
AoxI	GGCC	4 cut(s)	320, 345, 363, 582
ApaI	GGGCCC	1 cut(s)	324
ApeKI	GCWGC	3 cut(s)	12, 329, 959
ApoI	RAATTY	2 cut(s)	304, 404
AspLEI	GCGC	2 cut(s)	17, 625
AspS9I	GGNCC	4 cut(s)	320, 321, 505, 525
AsuC2I	CCSGG	3 cut(s)	226, 324, 510
AsuHPI	GGTGA	2 cut(s)	30, 73
AvaI	CYCGRG	1 cut(s)	845
AvaII	GGWCC	2 cut(s)	505, 525
BaeGI	GKGCMC	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	679
BanII	GRGCYC	2 cut(s)	271, 324
BauI	CACGAG	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	597
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	24, 316, 946
BccI	CCATC	3 cut(s)	311, 356, 569
BciT130I	CCWGG	2 cut(s)	822, 915
BcnI	CCSGG	3 cut(s)	226, 324, 510
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	626
BisI	GCNGC	5 cut(s)	13, 330, 359, 396, 960
BlsI	GCNGC	5 cut(s)	14, 331, 360, 397, 961
Bme1390I	CCNGG	5 cut(s)	226, 324, 510, 822, 915
Bme18I	GGWCC	2 cut(s)	505, 525
BmeRI	GACNNNNNGTC	1 cut(s)	475
BmeT110I	CYCGRG	1 cut(s)	845
BmgT120I	GGNCC	4 cut(s)	320, 321, 505, 525
BmiI	GGNNCC	4 cut(s)	322, 507, 526, 681
BmrFI	CCNGG	5 cut(s)	226, 324, 510, 822, 915
BmrI	ACTGGG	2 cut(s)	254, 289
BmsI	GCATC	1 cut(s)	946
BmuI	ACTGGG	2 cut(s)	254, 289
BpiI	GAAGAC	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	3 cut(s)	506, 551, 594
BpuMI	CCSGG	3 cut(s)	226, 324, 510
BsaJI	CCNNGG	3 cut(s)	342, 508, 821
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	2 cut(s)	365, 373
Bse1I	ACTGG	5 cut(s)	260, 295, 683, 691, 737
Bse3DI	GCAATG	1 cut(s)	397
BseBI	CCWGG	2 cut(s)	822, 915
BseDI	CCNNGG	3 cut(s)	342, 508, 821
BseGI	GGATG	4 cut(s)	179, 856, 870, 898
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	3 cut(s)	377, 390, 591
BseNI	ACTGG	5 cut(s)	260, 295, 683, 691, 737
BseRI	GAGGAG	2 cut(s)	368, 712
BseSI	GKGCMC	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	24, 316, 946
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	322, 347, 365, 584
BshNI	GGYRCC	1 cut(s)	679
BsiEI	CGRYCG	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	845
BsiSI	CCGG	5 cut(s)	225, 324, 366, 374, 510
BslFI	GGGAC	1 cut(s)	839
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	839
BsmI	GAATGC	3 cut(s)	215, 519, 625
BsnI	GGCC	4 cut(s)	322, 347, 365, 584
BsoBI	CYCGRG	1 cut(s)	845
Bsp120I	GGGCCC	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	271, 324
Bsp143I	GATC	2 cut(s)	653, 934
BspACI	CCGC	3 cut(s)	358, 395, 522
BspANI	GGCC	4 cut(s)	322, 347, 365, 584
BspCNI	CTCAG	3 cut(s)	378, 391, 592
BspLI	GGNNCC	4 cut(s)	322, 507, 526, 681
BspPI	GGATC	2 cut(s)	661, 929
BspT107I	GGYRCC	1 cut(s)	679
BspTI	CTTAAG	1 cut(s)	626
BsrBI	CCGCTC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	397
BsrFI	RCCGGY	2 cut(s)	365, 373
BsrI	ACTGG	5 cut(s)	260, 295, 683, 691, 737
BssAI	RCCGGY	2 cut(s)	365, 373
BssECI	CCNNGG	3 cut(s)	342, 508, 821
BssMI	GATC	2 cut(s)	653, 934
BssSI	CACGAG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	786
Bst2UI	CCWGG	2 cut(s)	822, 915
Bst6I	CTCTTC	2 cut(s)	143, 431
BstAFI	CTTAAG	1 cut(s)	626
BstAPI	GCANNNNNTGC	2 cut(s)	221, 959
BstC8I	GCNNGC	3 cut(s)	363, 367, 371
BstDEI	CTNAG	5 cut(s)	386, 399, 600, 710, 815
BstF5I	GGATG	4 cut(s)	179, 856, 870, 898
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 625
BstKTI	GATC	2 cut(s)	656, 937
BstMBI	GATC	2 cut(s)	653, 934
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 221, 275, 959
BstNI	CCWGG	2 cut(s)	822, 915
BstSCI	CCNGG	5 cut(s)	224, 322, 508, 820, 913
BstSLI	GKGCMC	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	24, 316, 946
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	653
BstXI	CCANNNNNNTGG	2 cut(s)	104, 535
BstYI	RGATCY	1 cut(s)	653
BsuRI	GGCC	4 cut(s)	322, 347, 365, 584
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	4 cut(s)	179, 856, 870, 898
BtsI	GCAGTG	2 cut(s)	97, 479
BtsIMutI	CAGTG	2 cut(s)	97, 479
Cac8I	GCNNGC	3 cut(s)	363, 367, 371
CaiI	CAGNNNCTG	1 cut(s)	959
CfoI	GCGC	2 cut(s)	17, 625
Cfr10I	RCCGGY	2 cut(s)	365, 373
Cfr13I	GGNCC	4 cut(s)	320, 321, 505, 525
CseI	GACGC	1 cut(s)	479
CviAII	CATG	2 cut(s)	221, 334
DdeI	CTNAG	5 cut(s)	386, 399, 600, 710, 815
DpnI	GATC	2 cut(s)	655, 936
DpnII	GATC	2 cut(s)	653, 934
DriI	GACNNNNNGTC	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	143, 431
Eam1105I	GACNNNNNGTC	1 cut(s)	475
EarI	CTCTTC	2 cut(s)	143, 431
Eco24I	GRGCYC	2 cut(s)	271, 324
Eco32I	GATATC	1 cut(s)	925
Eco47I	GGWCC	2 cut(s)	505, 525
Eco57I	CTGAAG	1 cut(s)	571
Eco88I	CYCGRG	1 cut(s)	845
EcoRI	GAATTC	2 cut(s)	304, 404
EcoRII	CCWGG	2 cut(s)	820, 913
EcoRV	GATATC	1 cut(s)	925
EcoT38I	GRGCYC	2 cut(s)	271, 324
FaeI	CATG	2 cut(s)	224, 337
FaiI	YATR	5 cut(s)	222, 335, 381, 492, 503
FaqI	GGGAC	1 cut(s)	839
FatI	CATG	2 cut(s)	220, 333
FauI	CCCGC	1 cut(s)	515
FblI	GTMKAC	1 cut(s)	338
Fnu4HI	GCNGC	5 cut(s)	13, 330, 359, 396, 960
FokI	GGATG	4 cut(s)	166, 863, 877, 905
FriOI	GRGCYC	2 cut(s)	271, 324
Fsp4HI	GCNGC	5 cut(s)	13, 330, 359, 396, 960
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	2 cut(s)	16, 624
GluI	GCNGC	5 cut(s)	13, 330, 359, 396, 960
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	4 cut(s)	322, 347, 365, 584
HapII	CCGG	5 cut(s)	225, 324, 366, 374, 510
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	2 cut(s)	17, 625
Hin1II	CATG	2 cut(s)	224, 337
Hin6I	GCGC	2 cut(s)	15, 623
HinP1I	GCGC	2 cut(s)	15, 623
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	7 cut(s)	242, 439, 476, 595, 602, 706, 796
HpaII	CCGG	5 cut(s)	225, 324, 366, 374, 510
HphI	GGTGA	2 cut(s)	30, 73
Hpy166II	GTNNAC	2 cut(s)	283, 339
Hpy188I	TCNGA	2 cut(s)	387, 661
Hpy188III	TCNNGA	8 cut(s)	301, 460, 599, 616, 748, 777, 788, 845
Hpy8I	GTNNAC	2 cut(s)	283, 339
HpyAV	CCTTC	8 cut(s)	88, 457, 595, 628, 634, 640, 745, 862
HpyCH4IV	ACGT	1 cut(s)	897
HpyCH4V	TGCA	1 cut(s)	962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 221, 275, 959
HpyF3I	CTNAG	5 cut(s)	386, 399, 600, 710, 815
HpySE526I	ACGT	1 cut(s)	897
Hsp92II	CATG	2 cut(s)	224, 337
HspAI	GCGC	2 cut(s)	15, 623
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	653, 934
LmnI	GCTCC	4 cut(s)	37, 326, 355, 699
Lsp1109I	GCAGC	3 cut(s)	24, 316, 946
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	897
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	2 cut(s)	655, 936
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	2 cut(s)	653, 934
MboII	GAAGA	5 cut(s)	130, 147, 448, 597, 648
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	2 cut(s)	271, 324
MluCI	AATT	4 cut(s)	273, 304, 404, 800
MlyI	GAGTC	3 cut(s)	448, 485, 611
MmeI	TCCRAC	2 cut(s)	94, 213
MroNI	GCCGGC	1 cut(s)	365
MseI	TTAA	2 cut(s)	627, 803
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	5 cut(s)	225, 324, 366, 374, 510
MspR9I	CCNGG	5 cut(s)	226, 324, 510, 822, 915
Mva1269I	GAATGC	3 cut(s)	215, 519, 625
MvaI	CCWGG	2 cut(s)	822, 915
MwoI	GCNNNNNNNGC	4 cut(s)	212, 221, 275, 959
NaeI	GCCGGC	1 cut(s)	367
NciI	CCSGG	3 cut(s)	226, 324, 510
NdeII	GATC	2 cut(s)	653, 934
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	2 cut(s)	224, 337
NlaIV	GGNNCC	4 cut(s)	322, 507, 526, 681
NmuCI	GTSAC	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	845
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PctI	GAATGC	3 cut(s)	215, 519, 625
PdiI	GCCGGC	1 cut(s)	367
PfeI	GAWTC	4 cut(s)	242, 595, 706, 796
PfoI	TCCNGGA	1 cut(s)	913
PkrI	GCNGC	5 cut(s)	14, 331, 360, 397, 961
PleI	GAGTC	3 cut(s)	447, 484, 610
PpsI	GAGTC	3 cut(s)	447, 484, 610
Psp6I	CCWGG	2 cut(s)	820, 913
PspGI	CCWGG	2 cut(s)	820, 913
PspN4I	GGNNCC	4 cut(s)	322, 507, 526, 681
PspOMI	GGGCCC	1 cut(s)	320
PspPI	GGNCC	4 cut(s)	320, 321, 505, 525
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	1 cut(s)	653
SalI	GTCGAC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	627, 803
SatI	GCNGC	5 cut(s)	13, 330, 359, 396, 960
Sau3AI	GATC	2 cut(s)	653, 934
Sau96I	GGNCC	4 cut(s)	320, 321, 505, 525
SchI	GAGTC	3 cut(s)	448, 485, 611
ScrFI	CCNGG	5 cut(s)	226, 324, 510, 822, 915
SduI	GDGCHC	2 cut(s)	271, 324
SfaNI	GCATC	1 cut(s)	946
Sfr274I	CTCGAG	1 cut(s)	845
SinI	GGWCC	2 cut(s)	505, 525
SlaI	CTCGAG	1 cut(s)	845
SmlI	CTYRAG	5 cut(s)	485, 566, 609, 626, 845
SmoI	CTYRAG	5 cut(s)	485, 566, 609, 626, 845
Sse9I	AATT	4 cut(s)	273, 304, 404, 800
SsiI	CCGC	3 cut(s)	358, 395, 522
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	5 cut(s)	224, 322, 508, 820, 913
TaiI	ACGT	1 cut(s)	900
TaqI	TCGA	6 cut(s)	271, 338, 351, 428, 695, 846
TaqII	GACCGA	2 cut(s)	356, 874
TasI	AATT	4 cut(s)	273, 304, 404, 800
TauI	GCSGC	2 cut(s)	361, 398
TfiI	GAWTC	4 cut(s)	242, 595, 706, 796
Tru1I	TTAA	2 cut(s)	627, 803
Tru9I	TTAA	2 cut(s)	627, 803
TscAI	CASTG	2 cut(s)	104, 486
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	3 cut(s)	12, 329, 959
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	2 cut(s)	17, 881
TspRI	CASTG	2 cut(s)	104, 486
Vha464I	CTTAAG	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	505, 525
XapI	RAATTY	2 cut(s)	304, 404
XhoI	CTCGAG	1 cut(s)	845
XmiI	GTMKAC	1 cut(s)	338
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.