Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007361

Physical Location & Seq

Genomic Coordinates Reverse (-)

14017845 .. 14023259

Gene Structure 5415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G170300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAACTTGGGGAACTCCAAAAACGCAAAAATTTCCTCACCACCCAAACACAATCCCCTCGAACTCAGCCTCCAACAAGCCTTCACCAACATCCAAAATCATTGCTCTGGTTTCCTGCACCACCTCTCTCACTTTCCTGTCTTCAACCCCAACCCCTCTTCCCTCAAAACCCAACTCGAGTCCACCTTCGCCAACCTCCAAAACCAAGCAAAGCATGCATTCAATACTGGGTTGTCAAGCTCTGTTCCCAAACATTCTTCTGGGAAAACCCCAGTTTGGGCCCGAATTGCGGTAAATAACAAAACCCAGACCACCAATTCTCCTGGTAATGGGTCAAAAGCCGCCATGTCTACCGAGGCAATCGAAGAGCGGCTTGCTGGAGTGCCTGTTTATGCTCTCAGTAATGCCGCTGAGGAATTCGTGTTGGTTTCGGGTGCTTCAAGTGGAAAGTCTCTTGGATTGTTTTGTTTCAAGAAAGAGGATGCAGAGGCACTTCTTGAGCATATCAGAATTATGGACCCCGGAATGCGAAGCGGGTCTAAAGTGGTGGCCGTGGCTTTAAATAAGGTTTTTCAGCTCAAGGTTGATGGGGTAGCCTTCAGGTTGATTCCTGAGTATTCTCAAGTCAAGAACGCGCTTAAGGAGAAGGAAAAGGTTGGAACTTCTGATGATGATGGCTTTCCCGGGGTGCCAGTTTTCCAGTCAAGGAGCTTGATTCTTAGAAGCCAAAGCAAGAGCTATCGTCCAGTGTTTTTCAGGAAGGAGGACTTGGAAAGTTCACTATCAAGAGCTTCTCGCGAGCAGAATCAATTAAATCCTGCCTTCAGACCTGGGGATGTTCAGGTTGCTGTTCTTGAAGAAGTAATAAAGGGGATGAAGGAAGGTTCTACATCAACGTGGGACGATGTTGTTTTCATCCCTCCTGGATTTGATATCTCTACTGATCCTACCAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tic22

Protein Analysis

320

Amino Acids

34.77

Weight (kDa)

9.08

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23710 AT3G23710
fragaria_vesca	FvH4_4g12880 FvH4_4g12880 FvH4_4g12880 FvH4_4g12880 FvH4_4g12880
malus_domestica	MD04G1021300.v1.1
prunus_persica	Prupe.1G170300_v2.0.a1 Prupe.1G170300_v2.0.a1 Prupe.1G170300_v2.0.a1 Prupe.1G170300_v2.0.a1
pyrus_communis	pycom04g01720
rosa_chinensis	RchiOBHm_Chr4g0412551
rosa_multiflora	Rmu_sc0002136.1_g000003
rosa_roxburghii	Rroxscaffold_5G00356770
rosa_rugosa	Rorug04G0103000
rosa_samantha	Rh4AG174200 Rh4BG173400 Rh4CG184900 Rh4DG169500 Rh4DG169700 Rh5BG246100 Rh5DG254700
rosa_wichuraiana	Rw4G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	688
AccBSI	CCGCTC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	350
AccII	CGCG	2 cut(s)	635, 798
AciI	CCGC	5 cut(s)	290, 342, 370, 408, 534
AclWI	GGATC	1 cut(s)	938
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	2 cut(s)	30, 416
AcuI	CTGAAG	2 cut(s)	583, 808
AfiI	CCNNNNNNNGG	4 cut(s)	276, 277, 289, 329
AflII	CTTAAG	1 cut(s)	638
AgsI	TTSAA	5 cut(s)	145, 223, 441, 472, 857
AjnI	CCWGG	3 cut(s)	322, 829, 922
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AloI	GAACNNNNNNTCC	2 cut(s)	54, 86
AluBI	AGCT	5 cut(s)	240, 577, 711, 738, 791
AluI	AGCT	5 cut(s)	240, 577, 711, 738, 791
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	1 cut(s)	938
Ama87I	CYCGRG	2 cut(s)	176, 683
AoxI	GGCC	2 cut(s)	279, 549
ApaI	GGGCCC	1 cut(s)	283
ApoI	RAATTY	2 cut(s)	30, 416
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	3 cut(s)	279, 280, 517
AsuC2I	CCSGG	3 cut(s)	522, 684, 685
AsuHPI	GGTGA	2 cut(s)	30, 76
AvaI	CYCGRG	2 cut(s)	176, 683
AvaII	GGWCC	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	411
BccI	CCATC	2 cut(s)	581, 668
BceAI	ACGGC	1 cut(s)	536
BciT130I	CCWGG	3 cut(s)	324, 831, 924
BcnI	CCSGG	3 cut(s)	522, 684, 685
BcoDI	GTCTC	1 cut(s)	456
BfrI	CTTAAG	1 cut(s)	638
BisI	GCNGC	3 cut(s)	342, 371, 408
BlsI	GCNGC	3 cut(s)	343, 372, 409
Bme1390I	CCNGG	6 cut(s)	324, 522, 684, 685, 831, 924
Bme18I	GGWCC	1 cut(s)	517
BmeT110I	CYCGRG	2 cut(s)	176, 683
BmgT120I	GGNCC	3 cut(s)	279, 280, 517
BmiI	GGNNCC	3 cut(s)	281, 519, 690
BmrFI	CCNGG	6 cut(s)	324, 522, 684, 685, 831, 924
BmrI	ACTGGG	2 cut(s)	237, 266
BmsI	GCATC	1 cut(s)	472
BmuI	ACTGGG	2 cut(s)	237, 266
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	3 cut(s)	518, 563, 606
BpuMI	CCSGG	3 cut(s)	522, 684, 685
BsaJI	CCNNGG	6 cut(s)	354, 520, 552, 683, 684, 830
BsaXI	ACNNNNNCTCC	6 cut(s)	54, 84, 304, 334, 372, 402
Bsc4I	CCNNNNNNNGG	4 cut(s)	276, 277, 289, 329
Bse1I	ACTGG	5 cut(s)	232, 272, 692, 700, 746
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	3 cut(s)	324, 831, 924
BseDI	CCNNGG	6 cut(s)	354, 520, 552, 683, 684, 830
BseGI	GGATG	5 cut(s)	90, 487, 841, 879, 915
BseLI	CCNNNNNNNGG	4 cut(s)	276, 277, 289, 329
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	4 cut(s)	79, 402, 412, 603
BseNI	ACTGG	5 cut(s)	232, 272, 692, 700, 746
BseSI	GKGCMC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	2 cut(s)	635, 798
BshFI	GGCC	2 cut(s)	281, 551
BshNI	GGYRCC	1 cut(s)	688
BsiHKCI	CYCGRG	2 cut(s)	176, 683
BsiSI	CCGG	2 cut(s)	522, 684
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	4 cut(s)	276, 277, 289, 329
BsmAI	GTCTC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	914
BsmI	GAATGC	2 cut(s)	218, 531
BsnI	GGCC	2 cut(s)	281, 551
BsoBI	CYCGRG	2 cut(s)	176, 683
Bsp120I	GGGCCC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	943
Bsp68I	TCGCGA	1 cut(s)	798
BspACI	CCGC	5 cut(s)	290, 342, 370, 408, 534
BspANI	GGCC	2 cut(s)	281, 551
BspCNI	CTCAG	4 cut(s)	78, 403, 411, 604
BspFNI	CGCG	2 cut(s)	635, 798
BspLI	GGNNCC	3 cut(s)	281, 519, 690
BspPI	GGATC	1 cut(s)	938
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	688
BspTI	CTTAAG	1 cut(s)	638
BsrBI	CCGCTC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	5 cut(s)	232, 272, 692, 700, 746
BssECI	CCNNGG	6 cut(s)	354, 520, 552, 683, 684, 830
BssMI	GATC	1 cut(s)	943
Bst2UI	CCWGG	3 cut(s)	324, 831, 924
Bst6I	CTCTTC	2 cut(s)	163, 360
BstAFI	CTTAAG	1 cut(s)	638
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstC8I	GCNNGC	3 cut(s)	216, 375, 800
BstDEI	CTNAG	5 cut(s)	65, 398, 411, 612, 719
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	5 cut(s)	90, 487, 841, 879, 915
BstFNI	CGCG	2 cut(s)	635, 798
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	1 cut(s)	946
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	1 cut(s)	943
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 287
BstNI	CCWGG	3 cut(s)	324, 831, 924
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	6 cut(s)	322, 520, 682, 683, 829, 922
BstSLI	GKGCMC	1 cut(s)	283
BstUI	CGCG	2 cut(s)	635, 798
BstV2I	GAAGAC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	281, 551
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	5 cut(s)	90, 487, 841, 879, 915
BtsIMutI	CAGTG	1 cut(s)	753
BtuMI	TCGCGA	1 cut(s)	798
Cac8I	GCNNGC	3 cut(s)	216, 375, 800
CfoI	GCGC	1 cut(s)	637
Cfr13I	GGNCC	3 cut(s)	279, 280, 517
Cfr9I	CCCGGG	1 cut(s)	683
CviAII	CATG	2 cut(s)	215, 346
DdeI	CTNAG	5 cut(s)	65, 398, 411, 612, 719
DpnI	GATC	1 cut(s)	945
DpnII	GATC	1 cut(s)	943
DraI	TTTAAA	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	2 cut(s)	163, 360
EarI	CTCTTC	2 cut(s)	163, 360
Eco24I	GRGCYC	1 cut(s)	283
Eco32I	GATATC	1 cut(s)	934
Eco47I	GGWCC	1 cut(s)	517
Eco57I	CTGAAG	2 cut(s)	583, 808
Eco88I	CYCGRG	2 cut(s)	176, 683
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	3 cut(s)	322, 829, 922
EcoRV	GATATC	1 cut(s)	934
EcoT22I	ATGCAT	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	283
FaeI	CATG	2 cut(s)	218, 349
FaiI	YATR	5 cut(s)	216, 347, 393, 504, 515
FalI	AAGNNNNNCTT	4 cut(s)	357, 389, 752, 784
FaqI	GGGAC	1 cut(s)	914
FatI	CATG	2 cut(s)	214, 345
FauI	CCCGC	1 cut(s)	527
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	3 cut(s)	342, 371, 408
FokI	GGATG	5 cut(s)	77, 494, 848, 886, 902
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	3 cut(s)	342, 371, 408
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	3 cut(s)	342, 371, 408
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	281, 551
HapII	CCGG	2 cut(s)	522, 684
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	2 cut(s)	218, 349
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HinfI	GANTC	4 cut(s)	179, 607, 715, 805
HpaII	CCGG	2 cut(s)	522, 684
HphI	GGTGA	2 cut(s)	30, 76
Hpy166II	GTNNAC	3 cut(s)	183, 351, 779
Hpy188I	TCNGA	3 cut(s)	509, 667, 827
Hpy188III	TCNNGA	8 cut(s)	472, 497, 611, 628, 757, 786, 797, 854
Hpy8I	GTNNAC	3 cut(s)	183, 351, 779
HpyAV	CCTTC	8 cut(s)	91, 196, 607, 640, 754, 832, 871, 875
HpyCH4IV	ACGT	1 cut(s)	896
HpyCH4V	TGCA	3 cut(s)	118, 218, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 287
HpyF3I	CTNAG	5 cut(s)	65, 398, 411, 612, 719
HpySE526I	ACGT	1 cut(s)	896
Hsp92II	CATG	2 cut(s)	218, 349
HspAI	GCGC	1 cut(s)	635
Kzo9I	GATC	1 cut(s)	943
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	708
LweI	GCATC	1 cut(s)	472
MaeII	ACGT	1 cut(s)	896
MalI	GATC	1 cut(s)	945
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	1 cut(s)	943
MboII	GAAGA	5 cut(s)	133, 150, 249, 377, 869
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	6 cut(s)	30, 285, 316, 416, 510, 809
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	97, 637
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	3 cut(s)	560, 639, 812
MslI	CAYNNNNRTG	1 cut(s)	895
MspA1I	CMGCKG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	638
MspI	CCGG	2 cut(s)	522, 684
MspR9I	CCNGG	6 cut(s)	324, 522, 684, 685, 831, 924
Mva1269I	GAATGC	2 cut(s)	218, 531
MvaI	CCWGG	3 cut(s)	324, 831, 924
MvnI	CGCG	2 cut(s)	635, 798
MwoI	GCNNNNNNNGC	2 cut(s)	215, 287
NciI	CCSGG	3 cut(s)	522, 684, 685
NdeII	GATC	1 cut(s)	943
NlaIII	CATG	2 cut(s)	218, 349
NlaIV	GGNNCC	3 cut(s)	281, 519, 690
NruI	TCGCGA	1 cut(s)	798
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	360
PctI	GAATGC	2 cut(s)	218, 531
PfeI	GAWTC	3 cut(s)	607, 715, 805
PfoI	TCCNGGA	1 cut(s)	922
PkrI	GCNGC	3 cut(s)	343, 372, 409
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	3 cut(s)	322, 829, 922
PspGI	CCWGG	3 cut(s)	322, 829, 922
PspN4I	GGNNCC	3 cut(s)	281, 519, 690
PspOMI	GGGCCC	1 cut(s)	279
PspPI	GGNCC	3 cut(s)	279, 280, 517
PspXI	VCTCGAGB	1 cut(s)	176
RruI	TCGCGA	1 cut(s)	798
RseI	CAYNNNNRTG	1 cut(s)	895
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	560, 639, 812
SatI	GCNGC	3 cut(s)	342, 371, 408
Sau3AI	GATC	1 cut(s)	943
Sau96I	GGNCC	3 cut(s)	279, 280, 517
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	6 cut(s)	324, 522, 684, 685, 831, 924
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	472
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	517
SlaI	CTCGAG	1 cut(s)	176
SmaI	CCCGGG	1 cut(s)	685
SmiMI	CAYNNNNRTG	1 cut(s)	895
SmlI	CTYRAG	5 cut(s)	176, 497, 578, 621, 638
SmoI	CTYRAG	5 cut(s)	176, 497, 578, 621, 638
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	6 cut(s)	30, 285, 316, 416, 510, 809
SsiI	CCGC	5 cut(s)	290, 342, 370, 408, 534
StyD4I	CCNGG	6 cut(s)	322, 520, 682, 683, 829, 922
TaiI	ACGT	1 cut(s)	899
TaqI	TCGA	3 cut(s)	60, 177, 363
TasI	AATT	6 cut(s)	30, 285, 316, 416, 510, 809
TauI	GCSGC	3 cut(s)	344, 373, 410
TfiI	GAWTC	3 cut(s)	607, 715, 805
Tru1I	TTAA	3 cut(s)	560, 639, 812
Tru9I	TTAA	3 cut(s)	560, 639, 812
TscAI	CASTG	1 cut(s)	753
TspDTI	ATGAA	3 cut(s)	17, 890, 904
TspMI	CCCGGG	1 cut(s)	683
TspRI	CASTG	1 cut(s)	753
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	2 cut(s)	30, 416
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	176
XmaI	CCCGGG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.