AT3G25400

dCTP pyrophosphatase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003799
Physical Location & Seq
Forward (+)
9212862 .. 9214283
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25400.1

Sequence Viewer

Length: 426 bp
ATGAACAAGGGAGAAGAAGGAGGAGAAGACAAGGAAGTGGTTTCTCTTCAAACTCTGAGTAAGAAAATGGATGATTTTGCAAAAGCTAGAGATTGGGAGAAGTATCACAGTCCAAGGAATCTCCTTCTTGCTATGGTGGGTGAAGTGGGAGAGCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGGATGTCCAGATTGGAAAGAAGAAGAGAAAGTCCATCTTGGAGAAGAGTTATCAGATGTTTTGTTGTATTTGGTGAGGCTTTCGGATGCGTGTGGTGTCGATTTAGGCAAAGCCGCTCTGCGCAAGATCGAGCTTAATGCTATTAAGTATCCAGTTCCCAAAAAGACTGATGATCATTGTGTTGGTGATGGTGAAGATTCAAGCAGCAAGATTAAGTTGAATGAAGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG MazG-like

Protein Analysis

141

Amino Acids

15.82

Weight (kDa)

4.9

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG-like PF12643 48 - 120 2.4e-06 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 308
AciI CCGC 1 cut(s) 306
AgsI TTSAA 3 cut(s) 50, 393, 412
AluBI AGCT 3 cut(s) 86, 154, 325
AluI AGCT 3 cut(s) 86, 154, 325
ApeKI GCWGC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 315
AsuHPI GGTGA 4 cut(s) 152, 277, 389, 395
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 408
BccI CCATC 2 cut(s) 234, 374
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciVI GTATCC 1 cut(s) 351
BclI TGATCA 1 cut(s) 364
BfaI CTAG 1 cut(s) 87
BfuI GTATCC 1 cut(s) 351
BisI GCNGC 2 cut(s) 306, 397
BlsI GCNGC 2 cut(s) 307, 398
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 3 cut(s) 76, 200, 283
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 408
Bsp143I GATC 2 cut(s) 318, 364
BspACI CCGC 1 cut(s) 306
BspCNI CTCAG 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 308
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 2 cut(s) 318, 364
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 3 cut(s) 51, 210, 231
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 76, 200, 283
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 2 cut(s) 321, 367
BstMBI GATC 2 cut(s) 318, 364
BstV1I GCAGC 1 cut(s) 408
BstV2I GAAGAC 1 cut(s) 33
BsuI GTATCC 1 cut(s) 351
BtsCI GGATG 3 cut(s) 76, 200, 283
CfoI GCGC 1 cut(s) 315
CviJI RGCY 5 cut(s) 86, 154, 271, 305, 325
CviKI_1 RGCY 5 cut(s) 86, 154, 271, 305, 325
DdeI CTNAG 1 cut(s) 56
DpnI GATC 2 cut(s) 320, 366
DpnII GATC 2 cut(s) 318, 364
Eam1104I CTCTTC 3 cut(s) 51, 210, 231
EarI CTCTTC 3 cut(s) 51, 210, 231
Eco130I CCWWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaiI YATR 1 cut(s) 134
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 306, 397
FokI GGATG 3 cut(s) 83, 207, 290
Fsp4HI GCNGC 2 cut(s) 306, 397
FspBI CTAG 1 cut(s) 87
FspI TGCGCA 1 cut(s) 314
GlaI GCGC 1 cut(s) 314
GluI GCNGC 2 cut(s) 306, 397
HhaI GCGC 1 cut(s) 315
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 2 cut(s) 118, 389
HphI GGTGA 4 cut(s) 152, 277, 389, 395
Hpy188I TCNGA 4 cut(s) 57, 160, 247, 277
Hpy188III TCNNGA 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 11, 134
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 56
HspAI GCGC 1 cut(s) 313
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 2 cut(s) 318, 364
LpnPI CCDG 2 cut(s) 213, 357
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 87
MalI GATC 2 cut(s) 320, 366
MbiI CCGCTC 1 cut(s) 308
MboI GATC 2 cut(s) 318, 364
MboII GAAGA 7 cut(s) 26, 38, 38, 224, 227, 248, 398
MnlI CCTC 3 cut(s) 14, 185, 261
MseI TTAA 3 cut(s) 327, 336, 405
NdeII GATC 2 cut(s) 318, 364
NsbI TGCGCA 1 cut(s) 314
PfeI GAWTC 2 cut(s) 118, 389
PkrI GCNGC 2 cut(s) 307, 398
SaqAI TTAA 3 cut(s) 327, 336, 405
SatI GCNGC 2 cut(s) 306, 397
Sau3AI GATC 2 cut(s) 318, 364
SetI ASST 3 cut(s) 88, 156, 327
SfaNI GCATC 1 cut(s) 268
SsiI CCGC 1 cut(s) 306
SspMI CTAG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 291, 321
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 2 cut(s) 118, 389
Tru1I TTAA 3 cut(s) 327, 336, 405
Tru9I TTAA 3 cut(s) 327, 336, 405
TseI GCWGC 1 cut(s) 396
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.