Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003799

Physical Location & Seq

Genomic Coordinates Reverse (-)

18613372 .. 18615712

Gene Structure 2341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G191900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACTGGGTTTGCAGGAGGTGAAAGCGTTACTCTTGATCTTCTCAAGAAGAAAATGGCGGAGTTTGCCAAAGAAAGAGACTGGGATCAGTTCCACAGCCCCAGAAACCTTCTCTTAGCTCTGGTGGGTGAAGTTGGAGAGCTATCTGAGATATTCCAATGGAAAGGGGAGGTTCCAAAGGGACTCCCTGACTGGAAAGAGGAGGAGAAAGAACACCTGGGGGAAGAGCTCTCTGATGTTCTGCTTTATTTGGTCAGGCTTTCTGACATCTGTGGTGTTGATCTTGGCAAAGCTGCTCTTCGCAAGGTTGGGCTCAATGCCATCAAGTACCCTGTTAAACAGAGCCAAATGAATATCACAAGCAACAACACCACCATCAACAGTGATGAAAATGCACAGAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

MazG MazG-like

Protein Analysis

136

Amino Acids

15.13

Weight (kDa)

5.1

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25400
fragaria_vesca	FvH4_2g17930 FvH4_4g03950 FvH4_4g03950
malus_domestica	MD04G1024800.v1.1 MD05G1163300.v1.1 MD10G1153100.v1.1 MD16G1221200.v1.1
prunus_persica	Prupe.1G041600_v2.0.a1 Prupe.8G191900_v2.0.a1
pyrus_communis	pycom10g13200 pycom13g18930 pycom16g18560
rosa_chinensis	RchiOBHm_Chr4g0394191 RchiOBHm_Chr6g0283171
rosa_laevigata	RLG00000009716 RLG00000012839
rosa_multiflora	Rmu_sc0004553.1_g000003 Rmu_sc0012185.1_g000004 Rmu_sc0014685.1_g000007
rosa_roxburghii	Rroxscaffold_5G00339180 Rroxscaffold_7G00185700
rosa_rugosa	Rorug03G0369300.1 Rorug06G0152000
rosa_samantha	Rh4AG050600 Rh4BG047500 Rh4CG054200 Rh4DG047100 Rh6AG264800 Rh6BG267700 Rh6CG266700 Rh6DG260000
rosa_wichuraiana	Rw4G004020 Rw6G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	4 cut(s)	119, 142, 229, 293
AluI	AGCT	4 cut(s)	119, 142, 229, 293
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	32, 140
BanII	GRGCYC	2 cut(s)	231, 315
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	329, 383
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	218
BmrI	ACTGGG	2 cut(s)	15, 91
BmuI	ACTGGG	2 cut(s)	15, 91
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	217
Bse1I	ACTGG	3 cut(s)	10, 86, 197
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	3 cut(s)	10, 86, 197
BseRI	GAGGAG	2 cut(s)	215, 218
BseXI	GCAGC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	231, 315
Bsp143I	GATC	3 cut(s)	37, 85, 280
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	93
BspQI	GCTCTTC	2 cut(s)	219, 303
BsrI	ACTGG	3 cut(s)	10, 86, 197
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	37, 85, 280
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	2 cut(s)	219, 303
BstDEI	CTNAG	2 cut(s)	115, 147
BstKTI	GATC	3 cut(s)	40, 88, 283
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	37, 85, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	328
CviJI	RGCY	8 cut(s)	99, 119, 142, 229, 259, 293, 313, 345
CviKI_1	RGCY	8 cut(s)	99, 119, 142, 229, 259, 293, 313, 345
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	115, 147
DpnI	GATC	3 cut(s)	39, 87, 282
DpnII	GATC	3 cut(s)	37, 85, 280
Eam1104I	CTCTTC	2 cut(s)	219, 303
EarI	CTCTTC	2 cut(s)	219, 303
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	2 cut(s)	231, 315
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	216
EcoT38I	GRGCYC	2 cut(s)	231, 315
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	294
FriOI	GRGCYC	2 cut(s)	231, 315
Fsp4HI	GCNGC	1 cut(s)	294
GluI	GCNGC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	183
HphI	GGTGA	2 cut(s)	32, 140
Hpy188I	TCNGA	3 cut(s)	148, 235, 265
Hpy188III	TCNNGA	2 cut(s)	35, 46
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4V	TGCA	2 cut(s)	14, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	115, 147
Kzo9I	GATC	3 cut(s)	37, 85, 280
LguI	GCTCTTC	2 cut(s)	219, 303
LpnPI	CCDG	9 cut(s)	67, 107, 115, 178, 201, 203, 230, 241, 345
Lsp1109I	GCAGC	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	39, 87, 282
MboI	GATC	3 cut(s)	37, 85, 280
MboII	GAAGA	4 cut(s)	32, 61, 236, 290
MhlI	GDGCHC	2 cut(s)	231, 315
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	5 cut(s)	11, 163, 193, 196, 393
MseI	TTAA	2 cut(s)	336, 406
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	3 cut(s)	37, 85, 280
NlaIV	GGNNCC	1 cut(s)	174
PciSI	GCTCTTC	2 cut(s)	219, 303
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	174
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	2 cut(s)	219, 303
SaqAI	TTAA	2 cut(s)	336, 406
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	37, 85, 280
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	2 cut(s)	231, 315
SetI	ASST	9 cut(s)	22, 111, 121, 144, 174, 219, 231, 295, 309
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SsiI	CCGC	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	336, 406
Tru9I	TTAA	2 cut(s)	336, 406
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	2 cut(s)	365, 402
TspRI	CASTG	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.