Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003799

Physical Location & Seq

Genomic Coordinates Reverse (-)

16673728 .. 16674888

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACTGGTTTTGCAGAAGGAGAAAATGTCACCCTTGATCTTCTCAAGAAGAAAATGGCCGACTTTGCAAAAGAGAGAGACTGGGATCAGTTCCATAGCCCCAGAAACCTTCTCCTAGCTCTGGTGGGAGAAGTGGGGGAGCTATCTGAGATATTTCAATGGAAAGGGGAGGTTCCAAAGGGACTGCCAGATTGGAAGGAGGAGGAAAAGGAGCACCTGGGAGAAGAGCTTTCTGATGTGCTGCTGTATCTGGTCAGGCTTTCTGACATTTGTGGTGTTGATCTTGGTAAAGCTGCCCTGCGCAAGGTGGAACTCAATGCCATTAAGTATCCTGTTTCACAGAAGCAGAGCGAAACAACCACCACCACAACTACCGCCACCAATGAGGAAATTGCACAGTTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

MazG MazG-like

Protein Analysis

136

Amino Acids

15.13

Weight (kDa)

4.75

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25400
fragaria_vesca	FvH4_2g17930 FvH4_4g03950 FvH4_4g03950
malus_domestica	MD04G1024800.v1.1 MD05G1163300.v1.1 MD10G1153100.v1.1 MD16G1221200.v1.1
prunus_persica	Prupe.1G041600_v2.0.a1 Prupe.8G191900_v2.0.a1
pyrus_communis	pycom10g13200 pycom13g18930 pycom16g18560
rosa_chinensis	RchiOBHm_Chr4g0394191 RchiOBHm_Chr6g0283171
rosa_laevigata	RLG00000009716 RLG00000012839
rosa_multiflora	Rmu_sc0004553.1_g000003 Rmu_sc0012185.1_g000004 Rmu_sc0014685.1_g000007
rosa_roxburghii	Rroxscaffold_5G00339180 Rroxscaffold_7G00185700
rosa_rugosa	Rorug03G0369300.1 Rorug06G0152000
rosa_samantha	Rh4AG050600 Rh4BG047500 Rh4CG054200 Rh4DG047100 Rh6AG264800 Rh6BG267700 Rh6CG266700 Rh6DG260000
rosa_wichuraiana	Rw4G004020 Rw6G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	302
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	121, 304
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	4 cut(s)	119, 142, 229, 293
AluI	AGCT	4 cut(s)	119, 142, 229, 293
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	241, 293
AspLEI	GCGC	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	228, 280
BciT130I	CCWGG	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	2 cut(s)	242, 294
BlsI	GCNGC	2 cut(s)	243, 295
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	218
BmrI	ACTGGG	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 304
Bse1I	ACTGG	2 cut(s)	10, 86
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	121, 304
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	10, 86
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	228, 280
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	121, 304
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	37, 85, 280
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	10, 86
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	37, 85, 280
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	147
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	3 cut(s)	40, 88, 283
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	37, 85, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	228, 280
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	59
CfoI	GCGC	1 cut(s)	303
CviJI	RGCY	7 cut(s)	59, 99, 119, 142, 229, 259, 293
CviKI_1	RGCY	7 cut(s)	59, 99, 119, 142, 229, 259, 293
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	3 cut(s)	39, 87, 282
DpnII	GATC	3 cut(s)	37, 85, 280
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	216
FaiI	YATR	1 cut(s)	96
FaqI	GGGAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	242, 294
Fsp4HI	GCNGC	2 cut(s)	242, 294
FspBI	CTAG	1 cut(s)	116
FspI	TGCGCA	1 cut(s)	302
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	2 cut(s)	242, 294
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	148, 235, 265
Hpy188III	TCNNGA	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	11, 119, 190
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	14, 68, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	37, 85, 280
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	139, 211
Lsp1109I	GCAGC	2 cut(s)	228, 280
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	39, 87, 282
MboI	GATC	3 cut(s)	37, 85, 280
MboII	GAAGA	3 cut(s)	32, 61, 236
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	390
MnlI	CCTC	4 cut(s)	163, 193, 196, 379
MseI	TTAA	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	3 cut(s)	37, 85, 280
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	28
NsbI	TGCGCA	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	243, 295
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	242, 294
Sau3AI	GATC	3 cut(s)	37, 85, 280
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	8 cut(s)	111, 121, 144, 174, 219, 231, 295, 309
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	390
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	399
TasI	AATT	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	241, 293
Tsp45I	GTSAC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	302
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.