pycom13g18930

MazG nucleotide pyrophosphohydrolase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0003799
Physical Location & Seq
Forward (+)
14953590 .. 14955588
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g18930.1

Sequence Viewer

Length: 369 bp
ATGGGAGAAGGAGAAGAGATTAATGTAGGAGAAGAAGAAAGAGAGAATATTAGTCTCAAGGACCTCTCTAAGAAGCTTGAGGAATTCGCCAAGGCTAGAGACTGGGAGAAATATCATAGTCCCAGAAATCTACTCCTTGCTATGGTGGGAGAGGTAGGAGAGCTATCAGAAATATTTCAATGGAGGGGAGAGGTGGACAGAGGGTTGCCAAATTGGGAGGAATCAGATAAAGAGCATCTGGGAGAAGAGCTTTCCGATGTGCTTCTTTACCTCATCAGGCTGGCGGATATATGCGGCATTGATCGTGCCCATGCTGCCTCCAAAAAGATTGTCAAGAATGCCATCAAATACCCTCCCAAATTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG MazG-like

Protein Analysis

123

Amino Acids

14.06

Weight (kDa)

4.96

Isoelectric Point (pI)

26.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG-like PF12643 51 - 118 1.8e-06 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 284, 294
AcsI RAATTY 2 cut(s) 83, 359
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 3 cut(s) 76, 163, 250
AluI AGCT 3 cut(s) 76, 163, 250
Alw26I GTCTC 2 cut(s) 59, 93
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 2 cut(s) 83, 359
ArsI GACNNNNNNTTYG 2 cut(s) 315, 347
AseI ATTAAT 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 61
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 310
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 59, 93
BfaI CTAG 1 cut(s) 96
BisI GCNGC 2 cut(s) 295, 315
BlsI GCNGC 2 cut(s) 296, 316
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 112
BpuEI CTTGAG 2 cut(s) 41, 98
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 1 cut(s) 301
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 59, 93
BsmFI GGGAC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 2 cut(s) 284, 294
BspQI GCTCTTC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 90
Bst6I CTCTTC 2 cut(s) 9, 240
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 69
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 2 cut(s) 59, 93
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 61
CviAII CATG 1 cut(s) 311
CviJI RGCY 5 cut(s) 76, 95, 163, 250, 280
CviKI_1 RGCY 5 cut(s) 76, 95, 163, 250, 280
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eam1104I CTCTTC 2 cut(s) 9, 240
EarI CTCTTC 2 cut(s) 9, 240
EciI GGCGGA 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 314
FaiI YATR 5 cut(s) 117, 143, 290, 292, 312
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 295, 315
Fsp4HI GCNGC 2 cut(s) 295, 315
FspBI CTAG 1 cut(s) 96
GluI GCNGC 2 cut(s) 295, 315
Hin1II CATG 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 3 cut(s) 169, 226, 256
Hpy188III TCNNGA 1 cut(s) 334
Hpy8I GTNNAC 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 1 cut(s) 314
Kzo9I GATC 1 cut(s) 301
LguI GCTCTTC 1 cut(s) 240
LpnPI CCDG 5 cut(s) 88, 136, 224, 262, 266
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 96
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 5 cut(s) 26, 44, 47, 257, 355
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 3 cut(s) 83, 211, 359
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 1 cut(s) 301
NlaIII CATG 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 240
PctI GAATGC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 296, 316
PpuMI RGGWCCY 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 61
PspPI GGNCC 1 cut(s) 61
PspPPI RGGWCCY 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 295, 315
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 310
SetI ASST 7 cut(s) 66, 78, 156, 165, 195, 252, 273
SfaNI GCATC 1 cut(s) 244
SinI GGWCC 1 cut(s) 61
SmlI CTYRAG 2 cut(s) 56, 77
SmoI CTYRAG 2 cut(s) 56, 77
Sse9I AATT 3 cut(s) 83, 211, 359
SsiI CCGC 2 cut(s) 284, 294
SspI AATATT 2 cut(s) 49, 174
SspMI CTAG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 90
TasI AATT 3 cut(s) 83, 211, 359
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseI GCWGC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 61
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 2 cut(s) 83, 359
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.