Rh4DG047100

dCTP pyrophosphatase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003799
Physical Location & Seq
Forward (+)
7664136 .. 7665561
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG047100.1

Sequence Viewer

Length: 369 bp
ATGGGAGAATTAGGAGAAGAGATTGTGAACAACATTAGCTTGAAGGACCTCTCTAAGAAGCTAGATGAATTTGCCAAGGCCAGAGATTGGGAGAAGTACCATAGTCCCAGAAATCTACTCCTTGCTATGGTGGGAGAGGTAGGTGAGCTATCAGAAATATTCCAATGGAGAGGAGAGGTGGACAAAGGGTTACCAAATTGGGAGGACTCAGATAAAGAGCATCTGGGAGAAGAGCTATCAGATGTGCTTCTTTACCTAATAAGGTTGGCTGACATATGTGGCATTGATCTTGCTGATGCTGCCTCCAAAAAGATTGTAAAGAATGCTATCAAATACCCACCACCCAAAGTCACCAAAGATCTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG MazG-like

Protein Analysis

122

Amino Acids

13.82

Weight (kDa)

4.96

Isoelectric Point (pI)

19.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG PF03819 35 - 107 5.6e-07 MazG nucleotide pyrophosphohydrolase domain
MazG-like PF12643 46 - 115 9.3e-08 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 87
AcsI RAATTY 1 cut(s) 68
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 87, 127
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 4 cut(s) 39, 61, 148, 235
AluI AGCT 4 cut(s) 39, 61, 148, 235
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 155, 343
AvaII GGWCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 286
BfaI CTAG 1 cut(s) 62
BglII AGATCT 1 cut(s) 358
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmsI GCATC 2 cut(s) 229, 286
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 127
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 87, 127
BseMII CTCAG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 2 cut(s) 87, 127
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 286, 358
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 286, 358
BssT1I CCWWGG 1 cut(s) 75
Bst6I CTCTTC 2 cut(s) 12, 225
BstDEI CTNAG 2 cut(s) 54, 208
BstEII GGTNACC 1 cut(s) 189
BstKTI GATC 2 cut(s) 289, 361
BstMBI GATC 2 cut(s) 286, 358
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstPI GGTNACC 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 97
CviJI RGCY 6 cut(s) 39, 61, 80, 148, 235, 269
CviKI_1 RGCY 6 cut(s) 39, 61, 80, 148, 235, 269
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 54, 208
DpnI GATC 2 cut(s) 288, 360
DpnII GATC 2 cut(s) 286, 358
Eam1104I CTCTTC 2 cut(s) 12, 225
EarI CTCTTC 2 cut(s) 12, 225
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 46
Eco91I GGTNACC 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaiI YATR 4 cut(s) 102, 128, 275, 277
FaqI GGGAC 1 cut(s) 90
FauNDI CATATG 1 cut(s) 275
Fnu4HI GCNGC 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 1 cut(s) 62
GluI GCNGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 80
HinfI GANTC 1 cut(s) 206
HphI GGTGA 2 cut(s) 155, 343
Hpy166II GTNNAC 2 cut(s) 28, 181
Hpy188I TCNGA 3 cut(s) 154, 211, 241
Hpy8I GTNNAC 2 cut(s) 28, 181
HpyAV CCTTC 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 2 cut(s) 54, 208
Kzo9I GATC 2 cut(s) 286, 358
LguI GCTCTTC 1 cut(s) 225
LpnPI CCDG 3 cut(s) 94, 121, 209
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 2 cut(s) 229, 286
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 189, 349
MalI GATC 2 cut(s) 288, 360
MboI GATC 2 cut(s) 286, 358
MboII GAAGA 3 cut(s) 29, 242, 353
MflI RGATCY 1 cut(s) 358
MluCI AATT 3 cut(s) 8, 68, 196
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 6 cut(s) 59, 130, 164, 169, 196, 313
MseI TTAA 1 cut(s) 367
Mva1269I GAATGC 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeI CATATG 1 cut(s) 275
NdeII GATC 2 cut(s) 286, 358
NmuCI GTSAC 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 225
PctI GAATGC 1 cut(s) 328
PflMI CCANNNNNTGG 1 cut(s) 87
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
PspEI GGTNACC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 46
PspPPI RGGWCCY 1 cut(s) 46
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 367
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 2 cut(s) 286, 358
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 200
SfaNI GCATC 2 cut(s) 229, 286
SgeI CNNG 8 cut(s) 52, 74, 88, 93, 120, 134, 236, 302
SinI GGWCC 1 cut(s) 46
Sse9I AATT 3 cut(s) 8, 68, 196
SspI AATATT 1 cut(s) 159
SspMI CTAG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 75
TasI AATT 3 cut(s) 8, 68, 196
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 81, 353
Van91I CCANNNNNTGG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 68
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.