Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003799

Physical Location & Seq

Genomic Coordinates Reverse (-)

15361075 .. 15362649

Gene Structure 1575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTGGGTTTTCTGAAGCTGAAAGCGTCACTCTTGACCTGCTCAAGACGATGATGGCTGAGTTTGCTAGAGAGAGAAACTGGGACCAGTTCCATAGCCCCAGAAACTTGCTCTTGGCTCTGGTGGGTGAAGTGGGAGAGCTTTCAGAGATATTTCAATGGAAAGGAGAAGTTCCAAAGGGCCTTCCTGGTTGGGAAGAAGAGGAAAAGCAACACCTGGGTGAAGAGCTCTCTGATGTTCTGCTGTATCTGGTCAGGCTCTCTGACATTTGTGGTGTTGATCTTGGCAAAGCTGCTCTGCGCAAAGTTGAACTCAATGCCATCAAGTACCCAGTTTCACAGAAACAGAACCAGACCAATGGCACCAGCAGCCCCAACACAACTACCACCATCAACACCAGCAATGGTAATAACCACACGGAGGAAATCACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

MazG MazG-like

Protein Analysis

146

Amino Acids

16.13

Weight (kDa)

4.79

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MazG	PF03819	33 - 99	4.9e-06	MazG nucleotide pyrophosphohydrolase domain
MazG-like	PF12643	44 - 117	4.5e-06	MazG-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25400
fragaria_vesca	FvH4_2g17930 FvH4_4g03950 FvH4_4g03950
malus_domestica	MD04G1024800.v1.1 MD05G1163300.v1.1 MD10G1153100.v1.1 MD16G1221200.v1.1
prunus_persica	Prupe.1G041600_v2.0.a1 Prupe.8G191900_v2.0.a1
pyrus_communis	pycom10g13200 pycom13g18930 pycom16g18560
rosa_chinensis	RchiOBHm_Chr4g0394191 RchiOBHm_Chr6g0283171
rosa_laevigata	RLG00000009716 RLG00000012839
rosa_multiflora	Rmu_sc0004553.1_g000003 Rmu_sc0012185.1_g000004 Rmu_sc0014685.1_g000007
rosa_roxburghii	Rroxscaffold_5G00339180 Rroxscaffold_7G00185700
rosa_rugosa	Rorug03G0369300.1 Rorug06G0152000
rosa_samantha	Rh4AG050600 Rh4BG047500 Rh4CG054200 Rh4DG047100 Rh6AG264800 Rh6BG267700 Rh6CG266700 Rh6DG260000
rosa_wichuraiana	Rw4G004020 Rw6G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	2 cut(s)	158, 311
AjnI	CCWGG	2 cut(s)	187, 216
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	20, 142, 229, 293
AluI	AGCT	4 cut(s)	20, 142, 229, 293
Alw21I	GWGCWC	1 cut(s)	231
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	293, 369
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	85, 181
AsuHPI	GGTGA	2 cut(s)	140, 233
AvaII	GGWCC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	280, 381
BccI	CCATC	3 cut(s)	49, 329, 398
BciT130I	CCWGG	2 cut(s)	189, 218
BfaI	CTAG	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	48
BisI	GCNGC	2 cut(s)	294, 370
BlsI	GCNGC	2 cut(s)	295, 371
Bme1390I	CCNGG	2 cut(s)	189, 218
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	85, 181
BmiI	GGNNCC	2 cut(s)	86, 364
BmrFI	CCNGG	2 cut(s)	189, 218
BmrI	ACTGGG	3 cut(s)	15, 91, 326
BmuI	ACTGGG	3 cut(s)	15, 91, 326
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	5 cut(s)	10, 86, 88, 332, 436
Bse3DI	GCAATG	1 cut(s)	409
BseBI	CCWGG	2 cut(s)	189, 218
BseDI	CCNNGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	5 cut(s)	10, 86, 88, 332, 436
BseXI	GCAGC	2 cut(s)	280, 381
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	86, 364
BspMI	ACCTGC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	409
BsrI	ACTGG	5 cut(s)	10, 86, 88, 332, 436
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	280
Bst2UI	CCWGG	2 cut(s)	189, 218
Bst6I	CTCTTC	2 cut(s)	195, 219
BstDEI	CTNAG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 369
BstNI	CCWGG	2 cut(s)	189, 218
BstSCI	CCNGG	2 cut(s)	187, 216
BstV1I	GCAGC	2 cut(s)	280, 381
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	429
BveI	ACCTGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	85, 181
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	328
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	195, 219
EarI	CTCTTC	2 cut(s)	195, 219
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	187, 216
EcoT38I	GRGCYC	1 cut(s)	231
FaiI	YATR	1 cut(s)	96
FaqI	GGGAC	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	294, 370
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	294, 370
FspBI	CTAG	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	302
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	2 cut(s)	294, 370
HaeIII	GGCC	1 cut(s)	183
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HphI	GGTGA	2 cut(s)	140, 233
Hpy188I	TCNGA	4 cut(s)	16, 148, 235, 265
Hpy188III	TCNNGA	2 cut(s)	35, 46
HpyAV	CCTTC	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 369
HpyF3I	CTNAG	1 cut(s)	60
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	280
LguI	GCTCTTC	1 cut(s)	219
Lsp1109I	GCAGC	2 cut(s)	280, 381
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	3 cut(s)	209, 212, 236
MhlI	GDGCHC	1 cut(s)	231
MnlI	CCTC	2 cut(s)	196, 415
MslI	CAYNNNNRTG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	189, 218
MvaI	CCWGG	2 cut(s)	189, 218
MwoI	GCNNNNNNNGC	2 cut(s)	65, 369
NdeII	GATC	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	86, 364
NmuCI	GTSAC	1 cut(s)	28
NsbI	TGCGCA	1 cut(s)	302
OliI	CACNNNNGTG	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	295, 371
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	187, 216
PspGI	CCWGG	2 cut(s)	187, 216
PspN4I	GGNNCC	2 cut(s)	86, 364
PspPI	GGNCC	2 cut(s)	85, 181
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	219
SatI	GCNGC	2 cut(s)	294, 370
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	2 cut(s)	85, 181
ScrFI	CCNGG	2 cut(s)	189, 218
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	6 cut(s)	22, 42, 144, 219, 231, 295
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	187, 216
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	293, 369
Tsp45I	GTSAC	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	85
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.