Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004553.1

Orthogroup ID

OG0003799

Physical Location & Seq

Genomic Coordinates Reverse (-)

6822 .. 8286

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004553.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgggagaattaggagaagagattgttgtaggagaagagattgtgaacaacattagcctgaaggacatctctaagaagctagatgaatttgccaagaccagagattgggagaagtaccatagtcccagaaatctactccttgctatggtgggagaggtaggtgagctatcagaaatattccaatggagaggagaggtggacaagggattaccaaattgggaggactcagataaagagcatctgggagaagagttatcagatgtgcttctttacctaataaggttggctgacatatgtggcattgatcttgctgacgctgcctccaaaaagattgtaaagaatgctatcaaatacccaccacccaaagtcaccaaagatcttcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

MazG MazG-like

Protein Analysis

128

Amino Acids

14.47

Weight (kDa)

4.81

Isoelectric Point (pI)

20.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25400
fragaria_vesca	FvH4_2g17930 FvH4_4g03950 FvH4_4g03950
malus_domestica	MD04G1024800.v1.1 MD05G1163300.v1.1 MD10G1153100.v1.1 MD16G1221200.v1.1
prunus_persica	Prupe.1G041600_v2.0.a1 Prupe.8G191900_v2.0.a1
pyrus_communis	pycom10g13200 pycom13g18930 pycom16g18560
rosa_chinensis	RchiOBHm_Chr4g0394191 RchiOBHm_Chr6g0283171
rosa_laevigata	RLG00000009716 RLG00000012839
rosa_multiflora	Rmu_sc0004553.1_g000003 Rmu_sc0012185.1_g000004 Rmu_sc0014685.1_g000007
rosa_roxburghii	Rroxscaffold_5G00339180 Rroxscaffold_7G00185700
rosa_rugosa	Rorug03G0369300.1 Rorug06G0152000
rosa_samantha	Rh4AG050600 Rh4BG047500 Rh4CG054200 Rh4DG047100 Rh6AG264800 Rh6BG267700 Rh6CG266700 Rh6DG260000
rosa_wichuraiana	Rw4G004020 Rw6G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	105, 145
AluBI	AGCT	2 cut(s)	79, 166
AluI	AGCT	2 cut(s)	79, 166
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	173, 361
BbvI	GCAGC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	80
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
BmsI	GCATC	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 145
BseLI	CCNNNNNNNGG	2 cut(s)	105, 145
BseMII	CTCAG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	2 cut(s)	105, 145
BsmFI	GGGAC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	304, 376
BspCNI	CTCAG	1 cut(s)	239
BssMI	GATC	2 cut(s)	304, 376
Bst6I	CTCTTC	3 cut(s)	12, 30, 243
BstDEI	CTNAG	2 cut(s)	72, 226
BstKTI	GATC	2 cut(s)	307, 379
BstMBI	GATC	2 cut(s)	304, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	115
CviJI	RGCY	4 cut(s)	57, 79, 166, 287
CviKI_1	RGCY	4 cut(s)	57, 79, 166, 287
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	2 cut(s)	72, 226
DpnI	GATC	2 cut(s)	306, 378
DpnII	GATC	2 cut(s)	304, 376
Eam1104I	CTCTTC	3 cut(s)	12, 30, 243
EarI	CTCTTC	3 cut(s)	12, 30, 243
Eco57I	CTGAAG	1 cut(s)	80
FaiI	YATR	4 cut(s)	120, 146, 293, 295
FaqI	GGGAC	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	293
Fnu4HI	GCNGC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	318
HgaI	GACGC	1 cut(s)	323
HinfI	GANTC	1 cut(s)	224
HphI	GGTGA	2 cut(s)	173, 361
Hpy166II	GTNNAC	2 cut(s)	46, 199
Hpy188I	TCNGA	3 cut(s)	172, 229, 259
Hpy8I	GTNNAC	2 cut(s)	46, 199
HpyAV	CCTTC	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	72, 226
Kzo9I	GATC	2 cut(s)	304, 376
LpnPI	CCDG	4 cut(s)	71, 112, 139, 227
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	306, 378
MboI	GATC	2 cut(s)	304, 376
MboII	GAAGA	4 cut(s)	29, 47, 260, 371
MflI	RGATCY	1 cut(s)	376
MluCI	AATT	3 cut(s)	8, 86, 214
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	5 cut(s)	148, 182, 187, 214, 331
MseI	TTAA	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	2 cut(s)	304, 376
NmuCI	GTSAC	1 cut(s)	367
PctI	GAATGC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	2 cut(s)	304, 376
SchI	GAGTC	1 cut(s)	218
SetI	ASST	7 cut(s)	81, 159, 163, 168, 198, 276, 284
SfaNI	GCATC	1 cut(s)	247
SgeI	CNNG	9 cut(s)	70, 92, 106, 111, 138, 152, 214, 254, 320
Sse9I	AATT	3 cut(s)	8, 86, 214
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	1 cut(s)	80
TasI	AATT	3 cut(s)	8, 86, 214
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	99, 371
Van91I	CCANNNNNTGG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	86
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.