Rh4AG050600

dCTP pyrophosphatase 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
10690184 .. 10692579
2396 bp
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UTR
Exon/CDS
Intron
Rh4AG050600.1

Sequence Viewer

Length: 378 bp
ATGGGAGAAGAGATTGTTGTAGGAGAAGAGATTGTGAACAACATTAGCCTGAAGGACCTCTCTAAGAAGCTAGATGAATTTGCCAAGACCAGAGATTGGGAGAAGTACCATAGTCCCAGAAATCTACTCCTCGCTATGGTGGGAGAGGTAGGTGAGCTATCAGAAATATTCCAATGGAGAGGAGAGGTGGACAAGGGATTACCAAATTGGGAGGACTCAGATAAAGAGCATCTGGGAGAAGAGCTATCAGATGTGCTTCTTTACCTAATAAGGTTGGCTGACATATGTGGCATTGATCTTGCTGATGCTGCCTCCAAAAAGATTGTAAAGAATGCTATCAAATACCCACCACCCAAAGTCACCAAAGATCTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

14.17

Weight (kDa)

4.88

Isoelectric Point (pI)

21.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG PF03819 38 - 110 6e-07 MazG nucleotide pyrophosphohydrolase domain
MazG-like PF12643 49 - 118 9.9e-08 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 96
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 96, 136
AluBI AGCT 3 cut(s) 70, 157, 244
AluI AGCT 3 cut(s) 70, 157, 244
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 164, 352
AvaII GGWCC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 295
BfaI CTAG 1 cut(s) 71
BglII AGATCT 1 cut(s) 367
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmsI GCATC 2 cut(s) 238, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 136
BseLI CCNNNNNNNGG 2 cut(s) 96, 136
BseMII CTCAG 1 cut(s) 231
BseRI GAGGAG 2 cut(s) 119, 195
BseXI GCAGC 1 cut(s) 295
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 96, 136
BsmFI GGGAC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 337
Bsp143I GATC 2 cut(s) 295, 367
BspCNI CTCAG 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 234
BssMI GATC 2 cut(s) 295, 367
Bst6I CTCTTC 3 cut(s) 3, 21, 234
BstDEI CTNAG 2 cut(s) 63, 217
BstKTI GATC 2 cut(s) 298, 370
BstMBI GATC 2 cut(s) 295, 367
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 106
CviJI RGCY 5 cut(s) 48, 70, 157, 244, 278
CviKI_1 RGCY 5 cut(s) 48, 70, 157, 244, 278
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 2 cut(s) 63, 217
DpnI GATC 2 cut(s) 297, 369
DpnII GATC 2 cut(s) 295, 367
Eam1104I CTCTTC 3 cut(s) 3, 21, 234
EarI CTCTTC 3 cut(s) 3, 21, 234
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 55
FaiI YATR 4 cut(s) 111, 137, 284, 286
FaqI GGGAC 1 cut(s) 99
FauNDI CATATG 1 cut(s) 284
Fnu4HI GCNGC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 71
GluI GCNGC 1 cut(s) 309
HinfI GANTC 1 cut(s) 215
HphI GGTGA 2 cut(s) 164, 352
Hpy166II GTNNAC 2 cut(s) 37, 190
Hpy188I TCNGA 3 cut(s) 163, 220, 250
Hpy8I GTNNAC 2 cut(s) 37, 190
HpyAV CCTTC 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 63, 217
Kzo9I GATC 2 cut(s) 295, 367
LguI GCTCTTC 1 cut(s) 234
LpnPI CCDG 4 cut(s) 62, 103, 130, 218
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 238, 295
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 297, 369
MboI GATC 2 cut(s) 295, 367
MboII GAAGA 4 cut(s) 20, 38, 251, 362
MflI RGATCY 1 cut(s) 367
MluCI AATT 2 cut(s) 77, 205
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 7 cut(s) 68, 139, 140, 173, 178, 205, 322
MseI TTAA 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeI CATATG 1 cut(s) 284
NdeII GATC 2 cut(s) 295, 367
NmuCI GTSAC 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 234
PctI GAATGC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 1 cut(s) 310
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 376
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 2 cut(s) 295, 367
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 209
SetI ASST 9 cut(s) 60, 72, 150, 154, 159, 189, 246, 267, 275
SfaNI GCATC 2 cut(s) 238, 295
SgeI CNNG 9 cut(s) 61, 83, 97, 102, 129, 143, 205, 245, 311
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 77, 205
SspI AATATT 1 cut(s) 168
SspMI CTAG 1 cut(s) 71
TasI AATT 2 cut(s) 77, 205
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 90, 362
Van91I CCANNNNNTGG 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 77
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.