MD04G1024800.v1.1

dCTP pyrophosphatase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0003799
Physical Location & Seq
Forward (+)
2872229 .. 2873889
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1024800.v1.1.491

Sequence Viewer

Length: 351 bp
ATGGCTGGAGTTGGAGTTGGAGTTGCAGAAGGAGAAGCTGTTACCCTGCAGGAGCTGAAGAAGAAAATGGCTGAGTTTTCAAGGGAGAGAGACTGGGAACATTTTCATAGCCCTAGAAATCTGCTTTTGGCTCTGGTGGGAGCAGTGGGAGAGCTATCAGAGATATTTCAGTGGAAAAGAGAGGTTCCAAGAGGACTGCCATACTGGAAAGAGGAAGAGAAGCAACACCTGGGGGAAGAGCTCTCAGATGTGTTGCTCTACCTGGTTAGGCTCTCTGACGTTTGTGGCATTGATCTTGGTAAAGCCGCACCACGAAAACTGGAGCTCAATGCCATCAAATACCAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG-like

Protein Analysis

117

Amino Acids

13.16

Weight (kDa)

5.65

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 81
AjnI CCWGG 2 cut(s) 228, 261
AluBI AGCT 5 cut(s) 38, 55, 154, 241, 325
AluI AGCT 5 cut(s) 38, 55, 154, 241, 325
Alw21I GWGCWC 2 cut(s) 243, 327
Alw26I GTCTC 1 cut(s) 84
AlwNI CAGNNNCTG 1 cut(s) 55
ArsI GACNNNNNNTTYG 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 102
BanII GRGCYC 2 cut(s) 243, 327
Bbv12I GWGCWC 2 cut(s) 243, 327
BccI CCATC 1 cut(s) 341
BciT130I CCWGG 2 cut(s) 230, 263
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 114, 349
BfmI CTRYAG 1 cut(s) 47
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 2 cut(s) 230, 263
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 230, 263
BmrI ACTGGG 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 103
BpmI CTGGAG 2 cut(s) 27, 341
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 5 cut(s) 6, 24, 30, 36, 54
Bse1I ACTGG 3 cut(s) 98, 209, 324
BseBI CCWGG 2 cut(s) 230, 263
BseDI CCNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 63, 258
BseNI ACTGG 3 cut(s) 98, 209, 324
BsiHKAI GWGCWC 2 cut(s) 243, 327
BsmAI GTCTC 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 243, 327
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 1 cut(s) 306
BspCNI CTCAG 2 cut(s) 64, 257
BspLI GGNNCC 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 231
BsrI ACTGG 3 cut(s) 98, 209, 324
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 230, 263
Bst6I CTCTTC 2 cut(s) 210, 231
BstDEI CTNAG 2 cut(s) 72, 244
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 292
BstNI CCWGG 2 cut(s) 230, 263
BstSCI CCNGG 2 cut(s) 228, 261
BstSFI CTRYAG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 176
CaiI CAGNNNCTG 1 cut(s) 55
CsiI ACCWGGT 1 cut(s) 261
DdeI CTNAG 2 cut(s) 72, 244
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eam1104I CTCTTC 2 cut(s) 210, 231
EarI CTCTTC 2 cut(s) 210, 231
Ecl136II GAGCTC 2 cut(s) 241, 325
Eco24I GRGCYC 2 cut(s) 243, 327
Eco53kI GAGCTC 2 cut(s) 241, 325
Eco57I CTGAAG 1 cut(s) 77
EcoICRI GAGCTC 2 cut(s) 241, 325
EcoRII CCWGG 2 cut(s) 228, 261
EcoT38I GRGCYC 2 cut(s) 243, 327
FaiI YATR 2 cut(s) 108, 202
Fnu4HI GCNGC 1 cut(s) 306
FriOI GRGCYC 2 cut(s) 243, 327
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 2 cut(s) 114, 349
GluI GCNGC 1 cut(s) 306
GsuI CTGGAG 2 cut(s) 27, 341
Hpy188I TCNGA 3 cut(s) 160, 247, 277
HpyAV CCTTC 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 26, 49
HpyF3I CTNAG 2 cut(s) 72, 244
HpySE526I ACGT 1 cut(s) 279
Kzo9I GATC 1 cut(s) 292
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 3 cut(s) 52, 140, 322
MabI ACCWGGT 1 cut(s) 261
MaeI CTAG 2 cut(s) 114, 349
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 4 cut(s) 70, 73, 227, 248
MhlI GDGCHC 2 cut(s) 243, 327
MnlI CCTC 3 cut(s) 175, 185, 205
MroXI GAANNNNTTC 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 230, 263
MvaI CCWGG 2 cut(s) 230, 263
NdeII GATC 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 186
PciSI GCTCTTC 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 307
Psp124BI GAGCTC 2 cut(s) 243, 327
Psp6I CCWGG 2 cut(s) 228, 261
PspGI CCWGG 2 cut(s) 228, 261
PspN4I GGNNCC 1 cut(s) 186
PstI CTGCAG 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 55
SacI GAGCTC 2 cut(s) 243, 327
SapI GCTCTTC 1 cut(s) 231
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 1 cut(s) 292
SbfI CCTGCAGG 1 cut(s) 51
ScrFI CCNGG 2 cut(s) 230, 263
SdaI CCTGCAGG 1 cut(s) 51
SduI GDGCHC 2 cut(s) 243, 327
SetI ASST 9 cut(s) 40, 57, 156, 186, 231, 243, 264, 282, 327
SexAI ACCWGGT 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 47
Sse8387I CCTGCAGG 1 cut(s) 51
SsiI CCGC 1 cut(s) 306
SspMI CTAG 2 cut(s) 114, 349
SstI GAGCTC 2 cut(s) 243, 327
StyD4I CCNGG 2 cut(s) 228, 261
TaiI ACGT 1 cut(s) 282
TauI GCSGC 1 cut(s) 308
TscAI CASTG 2 cut(s) 150, 176
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 2 cut(s) 150, 176
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 2 cut(s) 114, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.