Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003799

Physical Location & Seq

Genomic Coordinates Forward (+)

22928307 .. 22929490

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACTGGGTTTTCAGAAGCCGAAAGCGTCACTCTTGACCTACTCAAGAAGAAGGTGGCGGAGTTTGCTAGAGAGAGAAACTGGGATCAGTTCCACAGCCCCAGAAACTTGCTCTTGGCTCTGGTGGGTGAAGTGGGAGAGCTTTCGGAGATATTTCAATGGAAAGGAGAAGTTCCAAAGGGCCTTCCTGATTGGAAAGAAGAGGAAAAGCAACACCTGGGTGAAGAGCTCTCTGATGTCCTGCTCTATCTCGTCAGGCTCTCTGACGTATGTGGTGTTGATCTTGGCAAAGCTGCTCTGCGCAAAGTTGAACTCAATGCCATTAAGTACCCAGTTTCACAGAAACAGAACCAGAACCAGACCAATGGCACCACCAACCCCCACACAACCACCGCCATTAACACCAGCAATGACAATAACAACACAGAAGGGATCACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

MazG MazG-like

Protein Analysis

148

Amino Acids

16.41

Weight (kDa)

5.1

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MazG	PF03819	33 - 99	8.8e-06	MazG nucleotide pyrophosphohydrolase domain
MazG-like	PF12643	44 - 119	1.4e-06	MazG-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25400
fragaria_vesca	FvH4_2g17930 FvH4_4g03950 FvH4_4g03950
malus_domestica	MD04G1024800.v1.1 MD05G1163300.v1.1 MD10G1153100.v1.1 MD16G1221200.v1.1
prunus_persica	Prupe.1G041600_v2.0.a1 Prupe.8G191900_v2.0.a1
pyrus_communis	pycom10g13200 pycom13g18930 pycom16g18560
rosa_chinensis	RchiOBHm_Chr4g0394191 RchiOBHm_Chr6g0283171
rosa_laevigata	RLG00000009716 RLG00000012839
rosa_multiflora	Rmu_sc0004553.1_g000003 Rmu_sc0012185.1_g000004 Rmu_sc0014685.1_g000007
rosa_roxburghii	Rroxscaffold_5G00339180 Rroxscaffold_7G00185700
rosa_rugosa	Rorug03G0369300.1 Rorug06G0152000
rosa_samantha	Rh4AG050600 Rh4BG047500 Rh4CG054200 Rh4DG047100 Rh6AG264800 Rh6BG267700 Rh6CG266700 Rh6DG260000
rosa_wichuraiana	Rw4G004020 Rw6G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	2 cut(s)	59, 393
AclWI	GGATC	2 cut(s)	93, 440
AfaI	GTAC	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	158, 311
AjnI	CCWGG	1 cut(s)	216
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	142, 229, 293
AluI	AGCT	3 cut(s)	142, 229, 293
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	93, 440
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	140, 233
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	218
BmrI	ACTGGG	3 cut(s)	15, 91, 326
BmuI	ACTGGG	3 cut(s)	15, 91, 326
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	217
Bse1I	ACTGG	4 cut(s)	10, 86, 332, 442
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	415
BseNI	ACTGG	4 cut(s)	10, 86, 332, 442
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	85, 280, 432
BspACI	CCGC	2 cut(s)	59, 393
BspANI	GGCC	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	2 cut(s)	93, 440
BspQI	GCTCTTC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	4 cut(s)	10, 86, 332, 442
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	85, 280, 432
Bst2UI	CCWGG	1 cut(s)	218
Bst6I	CTCTTC	2 cut(s)	195, 219
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	3 cut(s)	88, 283, 435
BstMBI	GATC	3 cut(s)	85, 280, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	435
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	328
CviJI	RGCY	8 cut(s)	20, 99, 119, 142, 183, 229, 259, 293
CviKI_1	RGCY	8 cut(s)	20, 99, 119, 142, 183, 229, 259, 293
CviQI	GTAC	1 cut(s)	328
DpnI	GATC	3 cut(s)	87, 282, 434
DpnII	GATC	3 cut(s)	85, 280, 432
Eam1104I	CTCTTC	2 cut(s)	195, 219
EarI	CTCTTC	2 cut(s)	195, 219
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	231
FaiI	YATR	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	294
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	302
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	183
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HphI	GGTGA	2 cut(s)	140, 233
Hpy188I	TCNGA	4 cut(s)	16, 148, 235, 265
Hpy188III	TCNNGA	3 cut(s)	35, 46, 188
HpyAV	CCTTC	3 cut(s)	46, 194, 422
HpyCH4IV	ACGT	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	267
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	85, 280, 432
LguI	GCTCTTC	1 cut(s)	219
Lsp1109I	GCAGC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	87, 282, 434
MboI	GATC	3 cut(s)	85, 280, 432
MboII	GAAGA	3 cut(s)	61, 212, 236
MhlI	GDGCHC	1 cut(s)	231
MnlI	CCTC	1 cut(s)	196
MseI	TTAA	2 cut(s)	324, 399
MslI	CAYNNNNRTG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	3 cut(s)	85, 280, 432
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	28
NsbI	TGCGCA	1 cut(s)	302
OliI	CACNNNNGTG	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	181
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	324, 399
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	85, 280, 432
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	7 cut(s)	42, 57, 144, 219, 231, 270, 295
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SsiI	CCGC	2 cut(s)	59, 393
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	216
TaiI	ACGT	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	324, 399
Tru9I	TTAA	2 cut(s)	324, 399
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	28
TspRI	CASTG	1 cut(s)	442
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.