Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009475

Physical Location & Seq

Genomic Coordinates Forward (+)

9232821 .. 9235215

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGATTTCATGTTCTTAGACCTCCCATAGCTTTACGCAGCTCTCTCCTCGGCTTCTTATCCAAATCACACAATCCTCTTCTCCCCGGGAGATGGGTTCAAGCTGGAGAATGCAGTACCATGAGATGTTTTGCTTCTGCTACTCGTGGCAAAAACAAAAAACAGAGACTAGATGAGGCATGTGTTGAAAGGTTTAACGAATACAGTCGCACACTAATACAATCGTGGATTATGCAAGGCAAAGTTCTTGTGGATGGGAGAAGAGTTATTAAAGCTGGAATGCCTGTATCTACTACTGCAGCTATAAAGATCACAGCTGAGGTTCCAAAATTTGTATGTAGAGGTGGACTCAAGCTGGAAGCTGCACTTGAGAAGCTAGATGTTGATGTTTCTGAGAAAGTAGTTCTTGATGCAGGACTTTCTACTGGAGGGTTTACGGATTGTTTGCTACGTTATGGTGCTGCTCATGTTTATGGCGTAGATGTTGGTTACGGTCAGGTAGCTGACAAAATTCGCAATGATAAGAAAGTGACTGTTATAGAAAGGACAAATCTGAGATACCTCCCAGGACTCCCACAAAAAGTCGATGTAGTGACGCTTGACCTCTCTTTCATTTCCATTCTTAAGGTGATGCCAGCTATTATGAATGTGATGAAAGAAGATGCGACTTTAGTTACCCTTGTTAAACCCCAATTTGAAGCTCGAAGACAACAGGTCGGGAAGGGTGGCATAGTGAGAGATCCCGAAGTACATCAAGAGGTTCTTGAGAAGATAATAAACGGTGTTGAGCGCTATGGATTTACCAACAAAGGCTTTATCGAATCTCCCATAAAGGGCGCAGACGGAAACATAGAGTTCTTGGCTTGCTTTAATCGAGGGACAGTAAAACCTGAAGCCGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FtsJ S4

Protein Analysis

301

Amino Acids

33.2

Weight (kDa)

9.23

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S4	PF01479	55 - 98	4.5e-08	S4 domain
FtsJ	PF01728	111 - 292	2.1e-41	FtsJ-like methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25470
fragaria_vesca	FvH4_2g17480 FvH4_2g17480 FvH4_2g17480
malus_domestica	MD10G1148200.v1.1
prunus_persica	Prupe.8G187200_v2.0.a1 Prupe.8G187200_v2.0.a1
pyrus_communis	pycom10g12820
rosa_chinensis	RchiOBHm_Chr5g0065021 RchiOBHm_Chr6g0282221
rosa_laevigata	RLG00000012900
rosa_multiflora	Rmu_co8177566.1_g000001 Rmu_sc0011940.1_g000011 Rmu_sc0014549.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186390
rosa_rugosa	Rorug06G0146300 Rorug06G0146400
rosa_samantha	Rh6AG259500 Rh6BG262800 Rh6CG261700 Rh6DG253700
rosa_wichuraiana	Rw6G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	734
AcsI	RAATTY	2 cut(s)	329, 510
AfaI	GTAC	2 cut(s)	118, 750
AfeI	AGCGCT	1 cut(s)	791
AfiI	CCNNNNNNNGG	2 cut(s)	93, 833
AflII	CTTAAG	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	101, 188, 698
AhdI	GACNNNNNGTC	1 cut(s)	713
AjnI	CCWGG	1 cut(s)	565
AloI	GAACNNNNNNTCC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	734
Ama87I	CYCGRG	1 cut(s)	86
Aor51HI	AGCGCT	1 cut(s)	791
ApeKI	GCWGC	4 cut(s)	39, 299, 362, 461
ApoI	RAATTY	2 cut(s)	329, 510
AspLEI	GCGC	2 cut(s)	792, 839
AsuC2I	CCSGG	2 cut(s)	87, 88
AsuHPI	GGTGA	1 cut(s)	640
AvaI	CYCGRG	1 cut(s)	86
BauI	CACGAG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	712
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	51, 311, 349, 448
BccI	CCATC	2 cut(s)	87, 248
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	2 cut(s)	87, 88
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	170, 377
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	793
BfrI	CTTAAG	1 cut(s)	623
BisI	GCNGC	4 cut(s)	40, 300, 363, 462
BlsI	GCNGC	4 cut(s)	41, 301, 364, 463
Bme1390I	CCNGG	3 cut(s)	87, 88, 567
BmeRI	GACNNNNNGTC	1 cut(s)	713
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	87, 88, 567
BmsI	GCATC	3 cut(s)	400, 621, 652
BpiI	GAAGAC	1 cut(s)	712
BplI	GAGNNNNNCTC	2 cut(s)	333, 365
BpmI	CTGGAG	2 cut(s)	126, 447
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	3 cut(s)	335, 389, 785
BpuMI	CCSGG	2 cut(s)	87, 88
BsaJI	CCNNGG	4 cut(s)	49, 85, 86, 565
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 833
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	4 cut(s)	49, 85, 86, 565
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	93, 833
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	3 cut(s)	309, 384, 545
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	4 cut(s)	51, 311, 349, 448
BsgI	GTGCAG	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	892
BslI	CCNNNNNNNGG	2 cut(s)	93, 833
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	892
BsmI	GAATGC	2 cut(s)	116, 285
BsoBI	CYCGRG	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	309, 739
BspCNI	CTCAG	3 cut(s)	310, 385, 546
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	734
BspTI	CTTAAG	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	4 cut(s)	49, 85, 86, 565
BssMI	GATC	2 cut(s)	309, 739
BssSI	CACGAG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	5 cut(s)	206, 494, 535, 782, 883
Bst6I	CTCTTC	2 cut(s)	84, 256
BstAFI	CTTAAG	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	636, 865
BstDEI	CTNAG	4 cut(s)	17, 318, 393, 554
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	793
BstHHI	GCGC	2 cut(s)	792, 839
BstKTI	GATC	2 cut(s)	312, 742
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	309, 739
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	3 cut(s)	85, 86, 565
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	4 cut(s)	51, 311, 349, 448
BstV2I	GAAGAC	1 cut(s)	712
BstX2I	RGATCY	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	739
BtsCI	GGATG	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	636, 865
CfoI	GCGC	2 cut(s)	792, 839
Cfr9I	CCCGGG	1 cut(s)	86
CseI	GACGC	1 cut(s)	604
Csp6I	GTAC	2 cut(s)	117, 749
CviAII	CATG	4 cut(s)	11, 121, 180, 467
CviQI	GTAC	2 cut(s)	117, 749
DdeI	CTNAG	4 cut(s)	17, 318, 393, 554
DpnI	GATC	2 cut(s)	311, 741
DpnII	GATC	2 cut(s)	309, 739
DriI	GACNNNNNGTC	1 cut(s)	713
Eam1104I	CTCTTC	2 cut(s)	84, 256
Eam1105I	GACNNNNNGTC	1 cut(s)	713
EarI	CTCTTC	2 cut(s)	84, 256
Eco47III	AGCGCT	1 cut(s)	791
Eco88I	CYCGRG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	565
FaeI	CATG	4 cut(s)	14, 124, 183, 470
FalI	AAGNNNNNCTT	6 cut(s)	351, 383, 390, 422, 747, 779
FaqI	GGGAC	1 cut(s)	892
FatI	CATG	4 cut(s)	10, 120, 179, 466
Fnu4HI	GCNGC	4 cut(s)	40, 300, 363, 462
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	4 cut(s)	40, 300, 363, 462
FspBI	CTAG	2 cut(s)	170, 377
GlaI	GCGC	2 cut(s)	791, 838
GluI	GCNGC	4 cut(s)	40, 300, 363, 462
GsuI	CTGGAG	2 cut(s)	126, 447
HaeII	RGCGCY	1 cut(s)	793
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	604
HhaI	GCGC	2 cut(s)	792, 839
Hin1II	CATG	4 cut(s)	14, 124, 183, 470
Hin6I	GCGC	2 cut(s)	790, 837
HinP1I	GCGC	2 cut(s)	790, 837
HinfI	GANTC	3 cut(s)	348, 570, 821
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	2 cut(s)	347, 435
Hpy188I	TCNGA	2 cut(s)	394, 555
Hpy188III	TCNNGA	5 cut(s)	407, 718, 743, 755, 764
Hpy8I	GTNNAC	2 cut(s)	347, 435
HpyAV	CCTTC	1 cut(s)	715
HpyCH4III	ACNGT	5 cut(s)	206, 494, 535, 782, 883
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	5 cut(s)	114, 235, 299, 365, 413
HpyF3I	CTNAG	4 cut(s)	17, 318, 393, 554
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	4 cut(s)	14, 124, 183, 470
HspAI	GCGC	2 cut(s)	790, 837
Kzo9I	GATC	2 cut(s)	309, 739
Lsp1109I	GCAGC	4 cut(s)	51, 311, 349, 448
LweI	GCATC	3 cut(s)	400, 621, 652
MaeI	CTAG	2 cut(s)	170, 377
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	4 cut(s)	488, 529, 592, 673
MalI	GATC	2 cut(s)	311, 741
MboI	GATC	2 cut(s)	309, 739
MboII	GAAGA	5 cut(s)	71, 273, 671, 717, 781
MflI	RGATCY	1 cut(s)	739
MluCI	AATT	3 cut(s)	329, 510, 692
MlyI	GAGTC	2 cut(s)	342, 564
MseI	TTAA	5 cut(s)	195, 270, 624, 684, 870
MslI	CAYNNNNRTG	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	317
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	3 cut(s)	87, 88, 567
Mva1269I	GAATGC	2 cut(s)	116, 285
MvaI	CCWGG	1 cut(s)	567
NciI	CCSGG	2 cut(s)	87, 88
NdeII	GATC	2 cut(s)	309, 739
NlaIII	CATG	4 cut(s)	14, 124, 183, 470
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	529, 592
NspI	RCATGY	1 cut(s)	183
PctI	GAATGC	2 cut(s)	116, 285
PfeI	GAWTC	1 cut(s)	821
PkrI	GCNGC	4 cut(s)	41, 301, 364, 463
PleI	GAGTC	2 cut(s)	342, 564
PpsI	GAGTC	2 cut(s)	342, 564
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	739
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	2 cut(s)	118, 750
RsaNI	GTAC	2 cut(s)	117, 749
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	5 cut(s)	195, 270, 624, 684, 870
SatI	GCNGC	4 cut(s)	40, 300, 363, 462
Sau3AI	GATC	2 cut(s)	309, 739
SchI	GAGTC	2 cut(s)	342, 564
ScrFI	CCNGG	3 cut(s)	87, 88, 567
SfaNI	GCATC	3 cut(s)	400, 621, 652
SfcI	CTRYAG	1 cut(s)	297
SmaI	CCCGGG	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	4 cut(s)	350, 368, 623, 764
SmoI	CTYRAG	4 cut(s)	350, 368, 623, 764
Sse9I	AATT	3 cut(s)	329, 510, 692
SspMI	CTAG	2 cut(s)	170, 377
StyD4I	CCNGG	3 cut(s)	85, 86, 565
TaaI	ACNGT	5 cut(s)	206, 494, 535, 782, 883
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	4 cut(s)	585, 703, 819, 874
TasI	AATT	3 cut(s)	329, 510, 692
TatI	WGTACW	1 cut(s)	748
TfiI	GAWTC	1 cut(s)	821
Tru1I	TTAA	5 cut(s)	195, 270, 624, 684, 870
Tru9I	TTAA	5 cut(s)	195, 270, 624, 684, 870
TseFI	GTSAC	2 cut(s)	529, 592
TseI	GCWGC	4 cut(s)	39, 299, 362, 461
Tsp45I	GTSAC	2 cut(s)	529, 592
TspDTI	ATGAA	3 cut(s)	601, 659, 668
TspGWI	ACGGA	2 cut(s)	452, 858
TspMI	CCCGGG	1 cut(s)	86
Vha464I	CTTAAG	1 cut(s)	623
XapI	RAATTY	2 cut(s)	329, 510
XceI	RCATGY	1 cut(s)	183
XmaI	CCCGGG	1 cut(s)	86
XspI	CTAG	2 cut(s)	170, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.