Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011940.1

Orthogroup ID

OG0009475

Physical Location & Seq

Genomic Coordinates Reverse (-)

39008 .. 41731

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011940.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggcatttcaggttctgaaatttccgagtcacatcatctcgcgccgttttggcagaacttcaggcttctatttcctatccgaattcaactcacataagctccctgcaagatgggttggagtgccaatgcatggtccttgtagaagctttgctgctgtgaagttatcaaaggatcaaacaccaaagaagaagaagagactggatgaagtgtgccttgaaaggtatgaacaatatagccgaacctacgtacagtcatggatcttacaagggaaagtattggtggatgggaaggtggtcaacaaagccggtactccagtctctgataaatctgttgtaaagattatggctgaagtccccaaatatgtatgtagagcaggacacaagttagaagctgcaattgaacagctaggtattgatgtttctggcaaagtagctcttgattcagggttgtcaaccggtggatttaccgactgtttactccagtatggtgcatcatttgtttatggagtcgatgtaggatatggacaggtagcggaaaaaattcgaactgatgaacgtgtgagtgtaatagaacggacaaatttaaggcaccttcctggactcccgcagaaagtagatttggtgactttggatctttcattcatctctattctattggtcatgcccgctgtagtcaatgtgatgaaagaagaggcaacattagtcaccctggttaaacctcagtttgaagctcgcagatcacaagtagggagtggtggcattgtaagagatccattagttcatcaagaagttcttgagaggatcatcaaaggtgttgagaattttggatttagcagcaaaggatggatagagtctcctctcaagggtgctgagggcaatatagaatttctagttcactttactcgaacagctgagaaaagtgtggagaacttggaatatacttctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FtsJ S4

Protein Analysis

316

Amino Acids

35.09

Weight (kDa)

9.2

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25470
fragaria_vesca	FvH4_2g17480 FvH4_2g17480 FvH4_2g17480
malus_domestica	MD10G1148200.v1.1
prunus_persica	Prupe.8G187200_v2.0.a1 Prupe.8G187200_v2.0.a1
pyrus_communis	pycom10g12820
rosa_chinensis	RchiOBHm_Chr5g0065021 RchiOBHm_Chr6g0282221
rosa_laevigata	RLG00000012900
rosa_multiflora	Rmu_co8177566.1_g000001 Rmu_sc0011940.1_g000011 Rmu_sc0014549.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186390
rosa_rugosa	Rorug06G0146300 Rorug06G0146400
rosa_samantha	Rh6AG259500 Rh6BG262800 Rh6CG261700 Rh6DG253700
rosa_wichuraiana	Rw6G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	588
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	533, 605, 666
AclWI	GGATC	5 cut(s)	180, 266, 639, 764, 809
AcsI	RAATTY	6 cut(s)	20, 83, 540, 580, 820, 884
AcuI	CTGAAG	2 cut(s)	45, 369
AfaI	GTAC	2 cut(s)	249, 310
AfiI	CCNNNNNNNGG	2 cut(s)	131, 863
AflIII	ACRYGT	1 cut(s)	556
AgeI	ACCGGT	1 cut(s)	455
AgsI	TTSAA	4 cut(s)	88, 218, 401, 728
AjnI	CCWGG	2 cut(s)	595, 708
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	7 cut(s)	100, 147, 392, 406, 434, 731, 911
AluI	AGCT	7 cut(s)	100, 147, 392, 406, 434, 731, 911
Alw26I	GTCTC	3 cut(s)	190, 322, 858
AlwI	GGATC	5 cut(s)	180, 266, 639, 764, 809
AlwNI	CAGNNNCTG	2 cut(s)	16, 320
ApeKI	GCWGC	3 cut(s)	152, 392, 834
ApoI	RAATTY	6 cut(s)	20, 83, 540, 580, 820, 884
AsiGI	ACCGGT	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	634, 697
AsuII	TTCGAA	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	134
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BanI	GGYRCC	1 cut(s)	588
BbvCI	CCTCAGC	1 cut(s)	870
BbvI	GCAGC	3 cut(s)	139, 379, 846
BccI	CCATC	3 cut(s)	105, 278, 837
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	597, 710
BcoDI	GTCTC	3 cut(s)	190, 322, 858
BfaI	CTAG	2 cut(s)	407, 890
BfmI	CTRYAG	1 cut(s)	669
BglI	GCCNNNNNGGC	1 cut(s)	51
BisI	GCNGC	3 cut(s)	153, 393, 835
BlsI	GCNGC	3 cut(s)	154, 394, 836
Bme1390I	CCNGG	2 cut(s)	597, 710
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	590
BmrFI	CCNGG	2 cut(s)	597, 710
BmsI	GCATC	1 cut(s)	500
BpmI	CTGGAG	2 cut(s)	297, 464
Bpu10I	CCTNAGC	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	2 cut(s)	815, 845
BsaAI	YACGTR	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	1 cut(s)	455
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 498, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 863
Bse118I	RCCGGY	2 cut(s)	305, 455
Bse1I	ACTGG	3 cut(s)	204, 314, 481
BseBI	CCWGG	2 cut(s)	597, 710
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	3 cut(s)	208, 289, 848
BseLI	CCNNNNNNNGG	2 cut(s)	131, 863
BseMII	CTCAG	3 cut(s)	734, 861, 903
BseNI	ACTGG	3 cut(s)	204, 314, 481
BseRI	GAGGAG	1 cut(s)	846
BseXI	GCAGC	3 cut(s)	139, 379, 846
Bsh1236I	CGCG	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	588
BshTI	ACCGGT	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	306, 456
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	131, 863
BsmAI	GTCTC	3 cut(s)	190, 322, 858
BsmFI	GGGAC	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	544
Bsp143I	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
BspACI	CCGC	3 cut(s)	533, 605, 666
BspCNI	CTCAG	3 cut(s)	733, 862, 904
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	590
BspPI	GGATC	5 cut(s)	180, 266, 639, 764, 809
BspT104I	TTCGAA	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	588
BsrFI	RCCGGY	2 cut(s)	305, 455
BsrI	ACTGG	3 cut(s)	204, 314, 481
BssAI	RCCGGY	2 cut(s)	305, 455
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
Bst2UI	CCWGG	2 cut(s)	597, 710
Bst4CI	ACNGT	2 cut(s)	252, 473
Bst6I	CTCTTC	2 cut(s)	188, 684
BstBAI	YACGTR	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	666, 733
BstDEI	CTNAG	3 cut(s)	720, 870, 912
BstF5I	GGATG	3 cut(s)	208, 289, 848
BstFNI	CGCG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	6 cut(s)	175, 261, 634, 740, 772, 804
BstMAI	GTCTC	3 cut(s)	190, 322, 858
BstMBI	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	2 cut(s)	597, 710
BstSCI	CCNGG	2 cut(s)	595, 708
BstSFI	CTRYAG	1 cut(s)	669
BstSNI	TACGTA	1 cut(s)	247
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	139, 379, 846
BstX2I	RGATCY	3 cut(s)	258, 631, 769
BstYI	RGATCY	3 cut(s)	258, 631, 769
BtsCI	GGATG	3 cut(s)	208, 289, 848
Cac8I	GCNNGC	2 cut(s)	666, 733
CaiI	CAGNNNCTG	2 cut(s)	16, 320
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	2 cut(s)	305, 455
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	248, 309
CspAI	ACCGGT	1 cut(s)	455
CviAII	CATG	3 cut(s)	131, 255, 661
CviQI	GTAC	2 cut(s)	248, 309
DdeI	CTNAG	3 cut(s)	720, 870, 912
DpnI	GATC	6 cut(s)	174, 260, 633, 739, 771, 803
DpnII	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
Eam1104I	CTCTTC	2 cut(s)	188, 684
EarI	CTCTTC	2 cut(s)	188, 684
Eco105I	TACGTA	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	45, 369
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	595, 708
EcoT22I	ATGCAT	1 cut(s)	132
FaeI	CATG	3 cut(s)	134, 258, 664
FalI	AAGNNNNNCTT	6 cut(s)	198, 230, 420, 452, 777, 809
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	3 cut(s)	130, 254, 660
FauI	CCCGC	2 cut(s)	612, 673
Fnu4HI	GCNGC	3 cut(s)	153, 393, 835
FokI	GGATG	3 cut(s)	215, 296, 855
Fsp4HI	GCNGC	3 cut(s)	153, 393, 835
FspBI	CTAG	2 cut(s)	407, 890
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	3 cut(s)	153, 393, 835
GsuI	CTGGAG	2 cut(s)	297, 464
HapII	CCGG	2 cut(s)	306, 456
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	134, 258, 664
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	2 cut(s)	298, 453
HindII	GTYRAC	2 cut(s)	298, 453
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	5 cut(s)	28, 440, 507, 600, 851
HpaII	CCGG	2 cut(s)	306, 456
HphI	GGTGA	2 cut(s)	634, 697
Hpy166II	GTNNAC	4 cut(s)	298, 453, 476, 895
Hpy188I	TCNGA	4 cut(s)	18, 27, 82, 322
Hpy188III	TCNNGA	3 cut(s)	437, 785, 794
Hpy8I	GTNNAC	4 cut(s)	298, 453, 476, 895
HpyAV	CCTTC	2 cut(s)	283, 602
HpyCH4III	ACNGT	2 cut(s)	252, 473
HpyCH4IV	ACGT	2 cut(s)	246, 556
HpyCH4V	TGCA	5 cut(s)	107, 130, 395, 491, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	3 cut(s)	720, 870, 912
HpySE526I	ACGT	2 cut(s)	246, 556
Hsp92II	CATG	3 cut(s)	134, 258, 664
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	3 cut(s)	139, 379, 846
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	2 cut(s)	407, 890
MaeII	ACGT	2 cut(s)	246, 556
MaeIII	GTNAC	3 cut(s)	29, 622, 703
MalI	GATC	6 cut(s)	174, 260, 633, 739, 771, 803
MboI	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
MboII	GAAGA	4 cut(s)	199, 202, 205, 701
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	3 cut(s)	258, 631, 769
MluCI	AATT	7 cut(s)	20, 83, 396, 540, 580, 820, 884
MlyI	GAGTC	4 cut(s)	37, 516, 594, 860
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	5 cut(s)	685, 729, 792, 865, 867
Mph1103I	ATGCAT	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	2 cut(s)	584, 714
MspA1I	CMGCKG	2 cut(s)	668, 911
MspI	CCGG	2 cut(s)	306, 456
MspR9I	CCNGG	2 cut(s)	597, 710
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	2 cut(s)	597, 710
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
NlaIII	CATG	3 cut(s)	134, 258, 664
NlaIV	GGNNCC	1 cut(s)	590
NmuCI	GTSAC	3 cut(s)	29, 622, 703
NsiI	ATGCAT	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	131
PfoI	TCCNGGA	1 cut(s)	595
PinAI	ACCGGT	1 cut(s)	455
PkrI	GCNGC	3 cut(s)	154, 394, 836
PleI	GAGTC	4 cut(s)	36, 515, 594, 859
PpsI	GAGTC	4 cut(s)	36, 515, 594, 859
Ppu21I	YACGTR	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	595, 708
PspGI	CCWGG	2 cut(s)	595, 708
PspN4I	GGNNCC	1 cut(s)	590
PspPI	GGNCC	1 cut(s)	134
PstNI	CAGNNNCTG	2 cut(s)	16, 320
PsuI	RGATCY	3 cut(s)	258, 631, 769
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	2 cut(s)	249, 310
RsaNI	GTAC	2 cut(s)	248, 309
SaqAI	TTAA	2 cut(s)	584, 714
SatI	GCNGC	3 cut(s)	153, 393, 835
Sau3AI	GATC	6 cut(s)	172, 258, 631, 737, 769, 801
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	4 cut(s)	37, 516, 594, 860
ScrFI	CCNGG	2 cut(s)	597, 710
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	669
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	794, 860
SmoI	CTYRAG	2 cut(s)	794, 860
SnaBI	TACGTA	1 cut(s)	247
Sse9I	AATT	7 cut(s)	20, 83, 396, 540, 580, 820, 884
SsiI	CCGC	3 cut(s)	533, 605, 666
SspMI	CTAG	2 cut(s)	407, 890
StyD4I	CCNGG	2 cut(s)	595, 708
TaaI	ACNGT	2 cut(s)	252, 473
TaiI	ACGT	2 cut(s)	249, 559
TaqI	TCGA	3 cut(s)	510, 544, 904
TasI	AATT	7 cut(s)	20, 83, 396, 540, 580, 820, 884
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	2 cut(s)	584, 714
Tru9I	TTAA	2 cut(s)	584, 714
TseFI	GTSAC	3 cut(s)	29, 622, 703
TseI	GCWGC	3 cut(s)	152, 392, 834
Tsp45I	GTSAC	3 cut(s)	29, 622, 703
TspDTI	ATGAA	7 cut(s)	219, 240, 567, 627, 631, 698, 770
TspGWI	ACGGA	1 cut(s)	589
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	6 cut(s)	20, 83, 540, 580, 820, 884
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	407, 890
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.