Rroxscaffold_7G00186390

FtsJ-like methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009475
Physical Location & Seq
Forward (+)
25734220 .. 25738109
3890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186390.1

Sequence Viewer

Length: 936 bp
ATGCTTAGAGAATTGAACTTGCTTGAGGATGTTATTGATGTAGACCATCATACTAGTCAGATGTGGCAGATAACCGGAGATGGCATTTCAGCAAGATGGGTTGGAGTGCCAATGCATGGTCCGTGTAGAAGCTTTGCTGCTGTGAAGTTATCAAAGGATCAAACACCAAAGAAGAAGAAGAGACTGGATGAAGTGTGCCTTGAAAGGTATGAACAATATAGCCGAACCTACGTACAGTCATGGATCTTACAAGGGAAAGTATTGGTGGATGGGAAGGTGGTCAACAAAGCCGGTACTCCAGTCTCTGATAAATCTGTTGTGAAGATTATGGCTGAAGTCCCCAAATATGTATGTAGAGCGGGACACAAGTTAGAAGCTGCGATTGAACAGCTATGTATCGATGTTTCTGGCAAAGTAGCTCTTGATTCAGGGTTGTCAACCGGTGGATTTACAGACTGTTTACTTCAGTATGGTGCATCATTTGTTTATGGAGTCGATGTAGGATATGGACAGGTAGCGGAAAAAATTCGAACTGATGAACGTGTGAGTGTGATAGAACGGACAAATTTAAGACACCTTCCTGGACTCCCGCAAAAAGTAGATTTGGTGACTTTGGATCTGTCATTCATCTCTATTCTATTGGTCATGCCTGCTGTAGTCAATGTGATGAAAGAAGAGGCAACGTTAGTCACCCTGGTTAAACCTCAGTTTGAAGCTCGCAGATCACAAGTAGGGAGTGGTGGCATTGTAAGAGATCCATTAGTTCATCAAGAAGTTCTTGAGAGGATCATCAAAGGTGTTGAGAATTTTGGATTTAGCAGCAAAGGATGGATAGAGTCTCCTCTCAAGGGTGCTGAGGGCAATATAGAATTTCTAGTTCACTTTACTCGAACAGCTGAGAAAAGTGCGGAGAACTTAGAATGTACTTCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FtsJ S4

Protein Analysis

311

Amino Acids

34.37

Weight (kDa)

6.67

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S4 PF01479 61 - 105 1.7e-09 S4 domain
FtsJ PF01728 116 - 296 5e-38 FtsJ-like methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 359
AccI GTMKAC 1 cut(s) 42
AciI CCGC 4 cut(s) 359, 518, 590, 908
AclI AACGTT 1 cut(s) 683
AclWI GGATC 5 cut(s) 165, 251, 624, 749, 794
AcsI RAATTY 4 cut(s) 525, 565, 805, 869
AcuI CTGAAG 2 cut(s) 354, 449
AfaI GTAC 3 cut(s) 234, 295, 925
AfiI CCNNNNNNNGG 2 cut(s) 116, 848
AflIII ACRYGT 1 cut(s) 541
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 4 cut(s) 16, 203, 386, 713
AhlI ACTAGT 1 cut(s) 53
AjnI CCWGG 2 cut(s) 580, 693
AluBI AGCT 6 cut(s) 132, 377, 391, 419, 716, 896
AluI AGCT 6 cut(s) 132, 377, 391, 419, 716, 896
Alw26I GTCTC 3 cut(s) 175, 307, 843
AlwI GGATC 5 cut(s) 165, 251, 624, 749, 794
AlwNI CAGNNNCTG 1 cut(s) 305
ApeKI GCWGC 3 cut(s) 137, 377, 819
ApoI RAATTY 4 cut(s) 525, 565, 805, 869
AsiGI ACCGGT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 619, 682
AsuII TTCGAA 1 cut(s) 529
AvaII GGWCC 1 cut(s) 119
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BbvCI CCTCAGC 1 cut(s) 855
BbvI GCAGC 3 cut(s) 124, 364, 831
BccI CCATC 5 cut(s) 54, 74, 90, 263, 822
BciT130I CCWGG 2 cut(s) 582, 695
BcoDI GTCTC 3 cut(s) 175, 307, 843
BcuI ACTAGT 1 cut(s) 53
BfaI CTAG 2 cut(s) 54, 875
BfmI CTRYAG 1 cut(s) 654
BisI GCNGC 3 cut(s) 138, 378, 820
BlsI GCNGC 3 cut(s) 139, 379, 821
Bme1390I CCNGG 2 cut(s) 582, 695
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 2 cut(s) 582, 695
BmsI GCATC 1 cut(s) 485
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 855
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 3 cut(s) 44, 800, 830
Bsa29I ATCGAT 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 693
BsaWI WCCGGW 2 cut(s) 74, 440
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 848
Bse118I RCCGGY 2 cut(s) 290, 440
Bse1I ACTGG 2 cut(s) 189, 299
BseBI CCWGG 2 cut(s) 582, 695
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 693
BseGI GGATG 4 cut(s) 34, 193, 274, 833
BseLI CCNNNNNNNGG 2 cut(s) 116, 848
BseMII CTCAG 3 cut(s) 719, 846, 888
BseNI ACTGG 2 cut(s) 189, 299
BseRI GAGGAG 1 cut(s) 831
BseXI GCAGC 3 cut(s) 124, 364, 831
BshTI ACCGGT 1 cut(s) 440
BshVI ATCGAT 1 cut(s) 399
BsiSI CCGG 3 cut(s) 75, 291, 441
BslFI GGGAC 2 cut(s) 323, 375
BslI CCNNNNNNNGG 2 cut(s) 116, 848
BsmAI GTCTC 3 cut(s) 175, 307, 843
BsmFI GGGAC 2 cut(s) 323, 375
Bsp119I TTCGAA 1 cut(s) 529
Bsp143I GATC 6 cut(s) 157, 243, 616, 722, 754, 786
BspACI CCGC 4 cut(s) 359, 518, 590, 908
BspCNI CTCAG 3 cut(s) 718, 847, 889
BspDI ATCGAT 1 cut(s) 399
BspPI GGATC 5 cut(s) 165, 251, 624, 749, 794
BspT104I TTCGAA 1 cut(s) 529
BsrBI CCGCTC 1 cut(s) 359
BsrFI RCCGGY 2 cut(s) 290, 440
BsrI ACTGG 2 cut(s) 189, 299
BssAI RCCGGY 2 cut(s) 290, 440
BssECI CCNNGG 1 cut(s) 693
BssMI GATC 6 cut(s) 157, 243, 616, 722, 754, 786
Bst2UI CCWGG 2 cut(s) 582, 695
Bst4CI ACNGT 2 cut(s) 237, 458
Bst6I CTCTTC 2 cut(s) 173, 669
BstBAI YACGTR 1 cut(s) 232
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 2 cut(s) 651, 718
BstDEI CTNAG 5 cut(s) 5, 705, 855, 897, 916
BstF5I GGATG 4 cut(s) 34, 193, 274, 833
BstKTI GATC 6 cut(s) 160, 246, 619, 725, 757, 789
BstMAI GTCTC 3 cut(s) 175, 307, 843
BstMBI GATC 6 cut(s) 157, 243, 616, 722, 754, 786
BstNI CCWGG 2 cut(s) 582, 695
BstSCI CCNGG 2 cut(s) 580, 693
BstSFI CTRYAG 1 cut(s) 654
BstSNI TACGTA 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 124, 364, 831
BstX2I RGATCY 3 cut(s) 243, 616, 754
BstYI RGATCY 3 cut(s) 243, 616, 754
Bsu15I ATCGAT 1 cut(s) 399
BsuTUI ATCGAT 1 cut(s) 399
BtsCI GGATG 4 cut(s) 34, 193, 274, 833
Cac8I GCNNGC 2 cut(s) 651, 718
CaiI CAGNNNCTG 1 cut(s) 305
Cfr10I RCCGGY 2 cut(s) 290, 440
Cfr13I GGNCC 1 cut(s) 119
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 3 cut(s) 233, 294, 924
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 3 cut(s) 116, 240, 646
CviJI RGCY 9 cut(s) 132, 222, 290, 332, 377, 391, 419, 716, 896
CviKI_1 RGCY 9 cut(s) 132, 222, 290, 332, 377, 391, 419, 716, 896
CviQI GTAC 3 cut(s) 233, 294, 924
DdeI CTNAG 5 cut(s) 5, 705, 855, 897, 916
DpnI GATC 6 cut(s) 159, 245, 618, 724, 756, 788
DpnII GATC 6 cut(s) 157, 243, 616, 722, 754, 786
Eam1104I CTCTTC 2 cut(s) 173, 669
EarI CTCTTC 2 cut(s) 173, 669
Eco105I TACGTA 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 2 cut(s) 354, 449
EcoRII CCWGG 2 cut(s) 580, 693
EcoT22I ATGCAT 1 cut(s) 117
FaeI CATG 3 cut(s) 119, 243, 649
FalI AAGNNNNNCTT 6 cut(s) 183, 215, 405, 437, 762, 794
FaqI GGGAC 2 cut(s) 323, 375
FatI CATG 3 cut(s) 115, 239, 645
FauI CCCGC 2 cut(s) 352, 597
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 138, 378, 820
FokI GGATG 4 cut(s) 41, 200, 281, 840
Fsp4HI GCNGC 3 cut(s) 138, 378, 820
FspBI CTAG 2 cut(s) 54, 875
GluI GCNGC 3 cut(s) 138, 378, 820
GsuI CTGGAG 1 cut(s) 282
HapII CCGG 3 cut(s) 75, 291, 441
Hin1II CATG 3 cut(s) 119, 243, 649
HincII GTYRAC 2 cut(s) 283, 438
HindII GTYRAC 2 cut(s) 283, 438
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 4 cut(s) 425, 492, 585, 836
HpaII CCGG 3 cut(s) 75, 291, 441
HphI GGTGA 2 cut(s) 619, 682
Hpy166II GTNNAC 5 cut(s) 43, 283, 438, 461, 880
Hpy188I TCNGA 2 cut(s) 60, 307
Hpy188III TCNNGA 3 cut(s) 422, 770, 779
Hpy8I GTNNAC 5 cut(s) 43, 283, 438, 461, 880
HpyAV CCTTC 2 cut(s) 268, 587
HpyCH4III ACNGT 2 cut(s) 237, 458
HpyCH4IV ACGT 3 cut(s) 231, 541, 683
HpyCH4V TGCA 3 cut(s) 115, 476, 932
HpyF3I CTNAG 5 cut(s) 5, 705, 855, 897, 916
HpySE526I ACGT 3 cut(s) 231, 541, 683
Hsp92II CATG 3 cut(s) 119, 243, 649
Kzo9I GATC 6 cut(s) 157, 243, 616, 722, 754, 786
Lsp1109I GCAGC 3 cut(s) 124, 364, 831
LweI GCATC 1 cut(s) 485
MaeI CTAG 2 cut(s) 54, 875
MaeII ACGT 3 cut(s) 231, 541, 683
MaeIII GTNAC 2 cut(s) 607, 688
MalI GATC 6 cut(s) 159, 245, 618, 724, 756, 788
MbiI CCGCTC 1 cut(s) 359
MboI GATC 6 cut(s) 157, 243, 616, 722, 754, 786
MboII GAAGA 5 cut(s) 184, 187, 190, 334, 686
MflI RGATCY 3 cut(s) 243, 616, 754
MluCI AATT 5 cut(s) 11, 525, 565, 805, 869
MlyI GAGTC 3 cut(s) 501, 579, 845
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 6 cut(s) 19, 670, 714, 777, 850, 852
Mph1103I ATGCAT 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 2 cut(s) 569, 699
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 3 cut(s) 75, 291, 441
MspR9I CCNGG 2 cut(s) 582, 695
MvaI CCWGG 2 cut(s) 582, 695
NdeII GATC 6 cut(s) 157, 243, 616, 722, 754, 786
NlaIII CATG 3 cut(s) 119, 243, 649
NmuCI GTSAC 2 cut(s) 607, 688
NsiI ATGCAT 1 cut(s) 117
NspV TTCGAA 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 116
PfoI TCCNGGA 1 cut(s) 580
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 3 cut(s) 139, 379, 821
PleI GAGTC 3 cut(s) 500, 579, 844
PpsI GAGTC 3 cut(s) 500, 579, 844
Ppu21I YACGTR 1 cut(s) 232
Psp1406I AACGTT 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 580, 693
PspGI CCWGG 2 cut(s) 580, 693
PspPI GGNCC 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 3 cut(s) 243, 616, 754
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 3 cut(s) 234, 295, 925
RsaNI GTAC 3 cut(s) 233, 294, 924
SaqAI TTAA 2 cut(s) 569, 699
SatI GCNGC 3 cut(s) 138, 378, 820
Sau3AI GATC 6 cut(s) 157, 243, 616, 722, 754, 786
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 3 cut(s) 501, 579, 845
ScrFI CCNGG 2 cut(s) 582, 695
SfaNI GCATC 1 cut(s) 485
SfcI CTRYAG 1 cut(s) 654
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 1 cut(s) 119
SmlI CTYRAG 3 cut(s) 23, 779, 845
SmoI CTYRAG 3 cut(s) 23, 779, 845
SnaBI TACGTA 1 cut(s) 232
SpeI ACTAGT 1 cut(s) 53
Sse9I AATT 5 cut(s) 11, 525, 565, 805, 869
SsiI CCGC 4 cut(s) 359, 518, 590, 908
SspMI CTAG 2 cut(s) 54, 875
StyD4I CCNGG 2 cut(s) 580, 693
TaaI ACNGT 2 cut(s) 237, 458
TaiI ACGT 3 cut(s) 234, 544, 686
TaqI TCGA 4 cut(s) 399, 495, 529, 889
TasI AATT 5 cut(s) 11, 525, 565, 805, 869
TatI WGTACW 1 cut(s) 923
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 2 cut(s) 569, 699
Tru9I TTAA 2 cut(s) 569, 699
TseFI GTSAC 2 cut(s) 607, 688
TseI GCWGC 3 cut(s) 137, 377, 819
Tsp45I GTSAC 2 cut(s) 607, 688
TspDTI ATGAA 6 cut(s) 204, 225, 552, 616, 683, 755
TspGWI ACGGA 2 cut(s) 111, 574
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 4 cut(s) 525, 565, 805, 869
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 2 cut(s) 54, 875
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.