Rorug06G0146300

FtsJ-like methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009475
Physical Location & Seq
Reverse (-)
20899999 .. 20900370
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0146300.1

Sequence Viewer

Length: 372 bp
ATGGCTAGAAGGAGGGTGAGATTGCACTACATCGCCAATGAGAGTTCCCGAAAAACCACATTCAGGAAAAGAAAGAAGAGCCTTCTAAAGAAGGTAGACGAGATAAGCACTCTCTGTGACATCAAGGCCGCGGCAATCATCTACAGCCCCTTTGACTCTGAGCCGGAGGTCTTCCCAAGTCATCCAGAAGTCCGCCAACTGCTGACGAGGTTCCGAGATATGCCGGAAATGGACAAGACAAGAAAGATGGTCGACCAGGAGACCTTCTTAAGACAGCGTATAGATAAAGCTCGGGAGCAGACCAAAAAGGTAAAAAGAGAAAATCGGGATAAGGAAATCTCTCAGATTAGGGGTCATCATGGGCCGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FtsJ S4

Protein Analysis

123

Amino Acids

14.66

Weight (kDa)

10.31

Isoelectric Point (pI)

65.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 50 1.9e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 96, 252
AccII CGCG 1 cut(s) 131
AciI CCGC 3 cut(s) 129, 131, 193
AfiI CCNNNNNNNGG 1 cut(s) 63
AflII CTTAAG 1 cut(s) 268
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 2 cut(s) 126, 362
AspS9I GGNCC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 163
BccI CCATC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 2 cut(s) 6, 370
BfmI CTRYAG 1 cut(s) 142
BfrI CTTAAG 1 cut(s) 268
BisI GCNGC 2 cut(s) 129, 132
BlsI GCNGC 2 cut(s) 130, 133
Bme1390I CCNGG 2 cut(s) 257, 366
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 2 cut(s) 257, 366
BpiI GAAGAC 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 150, 356
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 2 cut(s) 128, 364
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 3 cut(s) 164, 224, 365
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 2 cut(s) 128, 364
Bso31I GGTCTC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 291
BspACI CCGC 3 cut(s) 129, 131, 193
BspANI GGCC 2 cut(s) 128, 364
BspCNI CTCAG 2 cut(s) 151, 355
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 71
BstAFI CTTAAG 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 159, 342
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 2 cut(s) 255, 364
BstSFI CTRYAG 1 cut(s) 142
BstUI CGCG 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 163
BsuRI GGCC 2 cut(s) 128, 364
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 362
Cfr42I CCGCGG 1 cut(s) 132
CviAII CATG 1 cut(s) 359
CviJI RGCY 8 cut(s) 5, 81, 128, 147, 163, 290, 364, 369
CviKI_1 RGCY 8 cut(s) 5, 81, 128, 147, 163, 290, 364, 369
DdeI CTNAG 2 cut(s) 159, 342
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 362
FaiI YATR 3 cut(s) 221, 281, 360
FatI CATG 1 cut(s) 358
FblI GTMKAC 2 cut(s) 96, 252
Fnu4HI GCNGC 2 cut(s) 129, 132
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 129, 132
FspBI CTAG 2 cut(s) 6, 370
GluI GCNGC 2 cut(s) 129, 132
HaeIII GGCC 2 cut(s) 128, 364
HapII CCGG 3 cut(s) 164, 224, 365
Hin1II CATG 1 cut(s) 362
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 1 cut(s) 155
HpaII CCGG 3 cut(s) 164, 224, 365
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 97, 253
Hpy188I TCNGA 3 cut(s) 160, 215, 345
Hpy188III TCNNGA 5 cut(s) 48, 64, 185, 293, 326
Hpy8I GTNNAC 2 cut(s) 97, 253
HpyAV CCTTC 4 cut(s) 3, 85, 92, 274
HpyCH4V TGCA 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 159, 342
Hsp92II CATG 1 cut(s) 362
KspI CCGCGG 1 cut(s) 132
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 6 cut(s) 49, 177, 198, 237, 242, 269
MaeI CTAG 2 cut(s) 6, 370
MaeIII GTNAC 1 cut(s) 116
MboII GAAGA 2 cut(s) 88, 163
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 6, 160, 201
MseI TTAA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 131
MspCI CTTAAG 1 cut(s) 268
MspI CCGG 3 cut(s) 164, 224, 365
MspR9I CCNGG 2 cut(s) 257, 366
MvaI CCWGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 131
NciI CCSGG 1 cut(s) 366
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 130, 133
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 362
SacII CCGCGG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 129, 132
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 257, 366
SetI ASST 6 cut(s) 96, 171, 212, 266, 292, 312
SfcI CTRYAG 1 cut(s) 142
Sfr303I CCGCGG 1 cut(s) 132
SgrBI CCGCGG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SsiI CCGC 3 cut(s) 129, 131, 193
SspMI CTAG 2 cut(s) 6, 370
StyD4I CCNGG 2 cut(s) 255, 364
TaqI TCGA 1 cut(s) 252
TauI GCSGC 2 cut(s) 131, 134
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 268
XmiI GTMKAC 2 cut(s) 96, 252
XspI CTAG 2 cut(s) 6, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.