Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009475

Physical Location & Seq

Genomic Coordinates Reverse (-)

18413691 .. 18417248

Gene Structure 3558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G187200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCACTTCAGCTTCTCAAGTTCCCAAATCACATCATCATCTCCCGCCGTTTCTGCAGAACTTCAAGCTTCTTCCTTTTATCCCAGTCCAACTCACATCATAAGCTCCCTGACTTGGTTTTGTTTTCAGCAAGATGGGTCGGAGTGCCAATACATAGAAGCTTTGCTGCTGAGGTTCAACCAGCAAAGAAGAAGAGGAGGCTAGATGAGGTATGCCTGGAAAGGTATCAGCAATATAGCCGAACCTTCATACAATCATGGATCATACAAGGGAAAGTACTTGTAAATGGAAAGGTGGTTAACAAAGCGGGGACTCCAGTCTCTGACAAAGCTGTTGTACAGATAATGGCTGAAGTCCCAAAATATGTATGTAGAGCAGGACACAAGTTAGAAGCTGCCATTGAACAGCTAGGTATTGATGTTTCTGGCAAAATAGCTCTTGATTCAGGGTTGTCAACTGGTGGATTTACTGACTGTTTGCTTCAGTATGGTGCATCATTTGTTTATGGAGTTGATGTAGGTTATGGGCAGGTGGCAGAAAAAATTCGAACGGATGAACGTGTTAGTGTGATAGAACGAACAAATTTAAGACACCTTCCTGGACTCCCTCAAAGAGTTGATTTGGTGACTTTGGACCTCTCGTTCATCTCTATTCTATTGGTCATGCCTGCTGTAATCAAGGTAATGAAGGAAGAGTCGTCATTAGTCACCCTGGTCAAGCCTCAATTTGAAGCTCGCAGATCACAAGTAGGAAGTGGTGGGATTGTGCGAGATCCATTAGTCCATCAAGAAGTTCTTGAGAGGATTATCAAGGGTGTAGAGAATTTCGGATTTACCAGCAAAGGATGGATTGAGTCTCCTCTTAAGGGTGCTGAGGGAAATACAGAGTTTCTTGTTCACTTTACTCGGACAGCTAAGAAAAGTGAGGATGAACTTAAAATGCTAAATACGACGGAATCCGTTCAATTACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FtsJ S4

Protein Analysis

325

Amino Acids

36.14

Weight (kDa)

9.36

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25470
fragaria_vesca	FvH4_2g17480 FvH4_2g17480 FvH4_2g17480
malus_domestica	MD10G1148200.v1.1
prunus_persica	Prupe.8G187200_v2.0.a1 Prupe.8G187200_v2.0.a1
pyrus_communis	pycom10g12820
rosa_chinensis	RchiOBHm_Chr5g0065021 RchiOBHm_Chr6g0282221
rosa_laevigata	RLG00000012900
rosa_multiflora	Rmu_co8177566.1_g000001 Rmu_sc0011940.1_g000011 Rmu_sc0014549.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186390
rosa_rugosa	Rorug06G0146300 Rorug06G0146400
rosa_samantha	Rh6AG259500 Rh6BG262800 Rh6CG261700 Rh6DG253700
rosa_wichuraiana	Rw6G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	520
Acc36I	ACCTGC	1 cut(s)	520
AciI	CCGC	2 cut(s)	46, 308
AclWI	GGATC	2 cut(s)	269, 767
AcsI	RAATTY	3 cut(s)	543, 583, 823
AcuI	CTGAAG	2 cut(s)	372, 467
AfaI	GTAC	2 cut(s)	279, 339
AfiI	CCNNNNNNNGG	2 cut(s)	115, 866
AflII	CTTAAG	1 cut(s)	863
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	5 cut(s)	66, 179, 404, 731, 965
AjnI	CCWGG	3 cut(s)	216, 598, 711
AloI	GAACNNNNNNTCC	2 cut(s)	626, 658
Alw26I	GTCTC	2 cut(s)	325, 861
AlwI	GGATC	2 cut(s)	269, 767
AlwNI	CAGNNNCTG	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	167, 395
ApoI	RAATTY	3 cut(s)	543, 583, 823
Asp700I	GAANNNNTTC	2 cut(s)	543, 960
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	2 cut(s)	637, 700
AsuII	TTCGAA	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	634
BbvCI	CCTCAGC	2 cut(s)	171, 873
BbvI	GCAGC	2 cut(s)	154, 382
BccI	CCATC	3 cut(s)	129, 792, 840
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	3 cut(s)	218, 600, 713
BcoDI	GTCTC	2 cut(s)	325, 861
BfaI	CTAG	2 cut(s)	203, 410
BfmI	CTRYAG	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	863
BfuAI	ACCTGC	1 cut(s)	520
BisI	GCNGC	2 cut(s)	168, 396
BlsI	GCNGC	2 cut(s)	169, 397
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	3 cut(s)	218, 600, 713
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	634
BmrFI	CCNGG	3 cut(s)	218, 600, 713
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	503
BmuI	ACTGGG	1 cut(s)	79
BoxI	GACNNNNGTC	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	2 cut(s)	171, 873
Bpu14I	TTCGAA	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	818
BsaJI	CCNNGG	1 cut(s)	711
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 866
Bse1I	ACTGG	3 cut(s)	85, 317, 463
BseBI	CCWGG	3 cut(s)	218, 600, 713
BseDI	CCNNGG	1 cut(s)	711
BseGI	GGATG	3 cut(s)	559, 851, 934
BseLI	CCNNNNNNNGG	2 cut(s)	115, 866
BseMII	CTCAG	2 cut(s)	162, 864
BseNI	ACTGG	3 cut(s)	85, 317, 463
BseRI	GAGGAG	2 cut(s)	211, 849
BseXI	GCAGC	2 cut(s)	154, 382
BslFI	GGGAC	2 cut(s)	325, 341
BslI	CCNNNNNNNGG	2 cut(s)	115, 866
BsmAI	GTCTC	2 cut(s)	325, 861
BsmFI	GGGAC	2 cut(s)	325, 341
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1407I	TGTACA	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	261, 740, 772
BspACI	CCGC	2 cut(s)	46, 308
BspCNI	CTCAG	2 cut(s)	163, 865
BspMAI	CTGCAG	1 cut(s)	59
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	2 cut(s)	269, 767
BspT104I	TTCGAA	1 cut(s)	547
BspTI	CTTAAG	1 cut(s)	863
BsrGI	TGTACA	1 cut(s)	337
BsrI	ACTGG	3 cut(s)	85, 317, 463
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	3 cut(s)	261, 740, 772
Bst2UI	CCWGG	3 cut(s)	218, 600, 713
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	2 cut(s)	188, 687
BstAFI	CTTAAG	1 cut(s)	863
BstAUI	TGTACA	1 cut(s)	337
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	669, 736
BstDEI	CTNAG	3 cut(s)	171, 873, 915
BstF5I	GGATG	3 cut(s)	559, 851, 934
BstKTI	GATC	3 cut(s)	264, 743, 775
BstMAI	GTCTC	2 cut(s)	325, 861
BstMBI	GATC	3 cut(s)	261, 740, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	3 cut(s)	218, 600, 713
BstPAI	GACNNNNGTC	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	216, 598, 711
BstSFI	CTRYAG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	154, 382
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
BtsCI	GGATG	3 cut(s)	559, 851, 934
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	669, 736
CaiI	CAGNNNCTG	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	278, 338
CviAII	CATG	2 cut(s)	258, 664
CviQI	GTAC	2 cut(s)	278, 338
DdeI	CTNAG	3 cut(s)	171, 873, 915
DpnI	GATC	3 cut(s)	263, 742, 774
DpnII	GATC	3 cut(s)	261, 740, 772
Eam1104I	CTCTTC	2 cut(s)	188, 687
EarI	CTCTTC	2 cut(s)	188, 687
Eco47I	GGWCC	1 cut(s)	634
Eco57I	CTGAAG	2 cut(s)	372, 467
EcoRII	CCWGG	3 cut(s)	216, 598, 711
FaeI	CATG	2 cut(s)	261, 667
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FaqI	GGGAC	2 cut(s)	325, 341
FatI	CATG	2 cut(s)	257, 663
FauI	CCCGC	2 cut(s)	53, 301
Fnu4HI	GCNGC	2 cut(s)	168, 396
FokI	GGATG	3 cut(s)	566, 858, 941
Fsp4HI	GCNGC	2 cut(s)	168, 396
FspBI	CTAG	2 cut(s)	203, 410
GluI	GCNGC	2 cut(s)	168, 396
GsuI	CTGGAG	1 cut(s)	300
Hin1II	CATG	2 cut(s)	261, 667
HincII	GTYRAC	2 cut(s)	301, 456
HindII	GTYRAC	2 cut(s)	301, 456
HindIII	AAGCTT	2 cut(s)	67, 160
HinfI	GANTC	6 cut(s)	313, 443, 603, 695, 854, 956
HpaI	GTTAAC	1 cut(s)	301
HphI	GGTGA	2 cut(s)	637, 700
Hpy166II	GTNNAC	3 cut(s)	301, 456, 898
Hpy188I	TCNGA	4 cut(s)	143, 325, 830, 909
Hpy188III	TCNNGA	3 cut(s)	440, 788, 797
Hpy8I	GTNNAC	3 cut(s)	301, 456, 898
Hpy99I	CGWCG	1 cut(s)	955
HpyAV	CCTTC	3 cut(s)	256, 605, 682
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	2 cut(s)	57, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	3 cut(s)	171, 873, 915
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	2 cut(s)	261, 667
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	261, 740, 772
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	2 cut(s)	154, 382
LweI	GCATC	1 cut(s)	503
MaeI	CTAG	2 cut(s)	203, 410
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	2 cut(s)	625, 706
MalI	GATC	3 cut(s)	263, 742, 774
MboI	GATC	3 cut(s)	261, 740, 772
MboII	GAAGA	4 cut(s)	64, 202, 205, 704
MflI	RGATCY	1 cut(s)	772
MluCI	AATT	5 cut(s)	543, 583, 725, 823, 965
MlyI	GAGTC	4 cut(s)	307, 597, 704, 863
MmeI	TCCRAC	2 cut(s)	114, 121
MroXI	GAANNNNTTC	2 cut(s)	543, 960
MseI	TTAA	4 cut(s)	300, 587, 864, 936
MspCI	CTTAAG	1 cut(s)	863
MspR9I	CCNGG	3 cut(s)	218, 600, 713
MvaI	CCWGG	3 cut(s)	218, 600, 713
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	3 cut(s)	261, 740, 772
NlaIII	CATG	2 cut(s)	261, 667
NmuCI	GTSAC	2 cut(s)	625, 706
NspV	TTCGAA	1 cut(s)	547
PaqCI	CACCTGC	1 cut(s)	520
PdmI	GAANNNNTTC	2 cut(s)	543, 960
PfeI	GAWTC	2 cut(s)	443, 956
PfoI	TCCNGGA	1 cut(s)	598
PkrI	GCNGC	2 cut(s)	169, 397
PleI	GAGTC	4 cut(s)	307, 597, 703, 862
PpsI	GAGTC	4 cut(s)	307, 597, 703, 862
PshAI	GACNNNNGTC	1 cut(s)	317
Psp6I	CCWGG	3 cut(s)	216, 598, 711
PspGI	CCWGG	3 cut(s)	216, 598, 711
PspPI	GGNCC	1 cut(s)	634
PstI	CTGCAG	1 cut(s)	59
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	772
RsaI	GTAC	2 cut(s)	279, 339
RsaNI	GTAC	2 cut(s)	278, 338
SaqAI	TTAA	4 cut(s)	300, 587, 864, 936
SatI	GCNGC	2 cut(s)	168, 396
Sau3AI	GATC	3 cut(s)	261, 740, 772
Sau96I	GGNCC	1 cut(s)	634
ScaI	AGTACT	1 cut(s)	279
SchI	GAGTC	4 cut(s)	307, 597, 704, 863
ScrFI	CCNGG	3 cut(s)	218, 600, 713
SfaNI	GCATC	1 cut(s)	503
SfcI	CTRYAG	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	547
SinI	GGWCC	1 cut(s)	634
SmlI	CTYRAG	3 cut(s)	17, 797, 863
SmoI	CTYRAG	3 cut(s)	17, 797, 863
Sse9I	AATT	5 cut(s)	543, 583, 725, 823, 965
SsiI	CCGC	2 cut(s)	46, 308
SspMI	CTAG	2 cut(s)	203, 410
StyD4I	CCNGG	3 cut(s)	216, 598, 711
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	1 cut(s)	547
TasI	AATT	5 cut(s)	543, 583, 725, 823, 965
TatI	WGTACW	2 cut(s)	277, 337
TfiI	GAWTC	2 cut(s)	443, 956
Tru1I	TTAA	4 cut(s)	300, 587, 864, 936
Tru9I	TTAA	4 cut(s)	300, 587, 864, 936
TseFI	GTSAC	2 cut(s)	625, 706
TseI	GCWGC	2 cut(s)	167, 395
Tsp45I	GTSAC	2 cut(s)	625, 706
TspDTI	ATGAA	5 cut(s)	238, 570, 634, 701, 945
TspGWI	ACGGA	3 cut(s)	566, 949, 968
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	3 cut(s)	543, 583, 823
XmnI	GAANNNNTTC	2 cut(s)	543, 960
XspI	CTAG	2 cut(s)	203, 410
ZrmI	AGTACT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.