Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8177566.1

Orthogroup ID

OG0009475

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 681

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8177566.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ctttgctgctgtgaagttatcaaaggatcaaacaccaaagaagaagaagagactggatgaagtgtgccttgaaaggtatgaacaatatagccgaacctacgtacagtcatggatcttacaagggaaagtattggtggatgggaaggtggtcaacaaagccggtactccagtctctgataaatctgttgtaaagattatggctgaagtccccaaatatgtatgtagagcaggacacaagttagaagctgcaattgaacagctaggtattgatgtttctggcaaagtagctcttgattcagggttgtcaaccggtggatttaccgactgtttact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FtsJ S4

Protein Analysis

111

Amino Acids

12.14

Weight (kDa)

9.16

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25470
fragaria_vesca	FvH4_2g17480 FvH4_2g17480 FvH4_2g17480
malus_domestica	MD10G1148200.v1.1
prunus_persica	Prupe.8G187200_v2.0.a1 Prupe.8G187200_v2.0.a1
pyrus_communis	pycom10g12820
rosa_chinensis	RchiOBHm_Chr5g0065021 RchiOBHm_Chr6g0282221
rosa_laevigata	RLG00000012900
rosa_multiflora	Rmu_co8177566.1_g000001 Rmu_sc0011940.1_g000011 Rmu_sc0014549.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186390
rosa_rugosa	Rorug06G0146300 Rorug06G0146400
rosa_samantha	Rh6AG259500 Rh6BG262800 Rh6CG261700 Rh6DG253700
rosa_wichuraiana	Rw6G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	34, 120
AcuI	CTGAAG	1 cut(s)	223
AfaI	GTAC	2 cut(s)	103, 164
AgeI	ACCGGT	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	72, 255
AluBI	AGCT	3 cut(s)	246, 260, 288
AluI	AGCT	3 cut(s)	246, 260, 288
Alw26I	GTCTC	2 cut(s)	44, 176
AlwI	GGATC	2 cut(s)	34, 120
AlwNI	CAGNNNCTG	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	6, 246
AsiGI	ACCGGT	1 cut(s)	309
BaeI	ACNNNNGTAYC	2 cut(s)	154, 187
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	44, 176
BfaI	CTAG	1 cut(s)	261
BisI	GCNGC	2 cut(s)	7, 247
BlsI	GCNGC	2 cut(s)	8, 248
BpmI	CTGGAG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	309
Bse118I	RCCGGY	2 cut(s)	159, 309
Bse1I	ACTGG	2 cut(s)	58, 168
BseGI	GGATG	2 cut(s)	62, 143
BseNI	ACTGG	2 cut(s)	58, 168
BseXI	GCAGC	1 cut(s)	233
BshTI	ACCGGT	1 cut(s)	309
BsiSI	CCGG	2 cut(s)	160, 310
BslFI	GGGAC	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	44, 176
BsmFI	GGGAC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	26, 112
BspPI	GGATC	2 cut(s)	34, 120
BsrFI	RCCGGY	2 cut(s)	159, 309
BsrI	ACTGG	2 cut(s)	58, 168
BssAI	RCCGGY	2 cut(s)	159, 309
BssMI	GATC	2 cut(s)	26, 112
Bst4CI	ACNGT	2 cut(s)	106, 327
Bst6I	CTCTTC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	62, 143
BstKTI	GATC	2 cut(s)	29, 115
BstMAI	GTCTC	2 cut(s)	44, 176
BstMBI	GATC	2 cut(s)	26, 112
BstSNI	TACGTA	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	62, 143
CaiI	CAGNNNCTG	1 cut(s)	174
Cfr10I	RCCGGY	2 cut(s)	159, 309
Csp6I	GTAC	2 cut(s)	102, 163
CspAI	ACCGGT	1 cut(s)	309
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	6 cut(s)	91, 159, 201, 246, 260, 288
CviKI_1	RGCY	6 cut(s)	91, 159, 201, 246, 260, 288
CviQI	GTAC	2 cut(s)	102, 163
DpnI	GATC	2 cut(s)	28, 114
DpnII	GATC	2 cut(s)	26, 112
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco105I	TACGTA	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	223
FaeI	CATG	1 cut(s)	112
FaiI	YATR	6 cut(s)	79, 88, 110, 198, 217, 221
FalI	AAGNNNNNCTT	4 cut(s)	52, 84, 274, 306
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	7, 247
FokI	GGATG	2 cut(s)	69, 150
Fsp4HI	GCNGC	2 cut(s)	7, 247
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	2 cut(s)	7, 247
GsuI	CTGGAG	1 cut(s)	151
HapII	CCGG	2 cut(s)	160, 310
Hin1II	CATG	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	152, 307
HindII	GTYRAC	2 cut(s)	152, 307
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	2 cut(s)	160, 310
Hpy166II	GTNNAC	3 cut(s)	152, 307, 330
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	291
Hpy8I	GTNNAC	3 cut(s)	152, 307, 330
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	106, 327
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	26, 112
LpnPI	CCDG	7 cut(s)	39, 173, 181, 214, 262, 283, 323
Lsp1109I	GCAGC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	100
MalI	GATC	2 cut(s)	28, 114
MboI	GATC	2 cut(s)	26, 112
MboII	GAAGA	3 cut(s)	53, 56, 59
MfeI	CAATTG	1 cut(s)	250
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	1 cut(s)	250
MspI	CCGG	2 cut(s)	160, 310
MunI	CAATTG	1 cut(s)	250
NdeII	GATC	2 cut(s)	26, 112
NlaIII	CATG	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	294
PinAI	ACCGGT	1 cut(s)	309
PkrI	GCNGC	2 cut(s)	8, 248
Ppu21I	YACGTR	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	2 cut(s)	103, 164
RsaNI	GTAC	2 cut(s)	102, 163
SatI	GCNGC	2 cut(s)	7, 247
Sau3AI	GATC	2 cut(s)	26, 112
SetI	ASST	8 cut(s)	78, 99, 103, 148, 248, 262, 266, 290
SnaBI	TACGTA	1 cut(s)	101
Sse9I	AATT	1 cut(s)	250
SspMI	CTAG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	106, 327
TaiI	ACGT	1 cut(s)	103
TasI	AATT	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	294
TseI	GCWGC	2 cut(s)	6, 246
TspDTI	ATGAA	2 cut(s)	73, 94
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.