FvH4_2g17480

FtsJ-like methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009475
Physical Location & Seq
Reverse (-)
15047379 .. 15050652
3274 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17480.t2

Sequence Viewer

Length: 951 bp
ATGGCATTTCAGGTTCTGAAATTTCCAACTCACATCATCTCGCGCCGTTTTGCCAGAACTTCAGGCTTCCATTTCCTATCCGAATTCAACTCCCATAAGCTTCCTGCAACATGGGTTGGAGTGCCAATGCATTGTCCATGTAGAAGCTTTGCTTCTGTGAAGTTTTCAAAGGATCAAGCACCAAAGAAGAAGAAGAGATTGGATGAAGTGTGCCTTGAAAGATATGAACAATATAGCCGAACTTATGTACAGTCATGGATCTTACAAGGGAAAGTATTGGTGGATGGGAAGGTGGTCAACAAAGCCGGTACTCCAGTATCGGATAAATCTGTTGTTAAGATTATGGCTGAAGTCCCCAAATATGTATGTAGAGCAGGACATAAGTTAGAAGCTGCCATTGAACAGCTAGGTATCGATGTTTCTGGCAAAGTAGCTCTTGATTCAGGGTTGTCAACCGGTGGATTTACTGACTGTTTGCTTCAGTATGGTGCATTGTTTGTTTATGGAGTTGATGTAGGATACGGACAGGTAGCGGAAAAAATTCGAACGGATGAACGTGTGAGTGTGATAGAACGGACAAATTTAAGACACCTTCCTGGACTCCCGCAAAAAGTTGATGTGGTGACTTTGGATCTGTCATTCATCTCTATTCTATTGGTCATGCCCGCTGTAGTCAACATGATGAAAGAAGAGGCAACACTAGTCACCCTCGTTAAACCTCAGTTTGAAGCTCGCAGATCACAAGTAGGGAGTGGCGGCATTGTAAGAGATCCATTAGTTCATCAAGAAGTTCTTGAGAGGATCATCAAAGGGGTAGAGAATTTTGGATTTAGCAGCGAAGGATGGATCAAATCTCCACTCAAGGGTGCTGAGGGAAATACAGAATTTCTAGTTCACTTTACTCGAACAAGTGAGAAAAGTGCAGACAAACTAGAATGTACTACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FtsJ S4

Protein Analysis

317

Amino Acids

35.08

Weight (kDa)

9.11

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FtsJ PF01728 55 - 231 3.5e-36 FtsJ-like methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 43
AciI CCGC 4 cut(s) 533, 605, 666, 756
AclWI GGATC 6 cut(s) 180, 266, 639, 764, 809, 854
AcsI RAATTY 6 cut(s) 20, 83, 540, 580, 820, 884
AcuI CTGAAG 3 cut(s) 45, 369, 464
AfaI GTAC 3 cut(s) 249, 310, 940
AfiI CCNNNNNNNGG 1 cut(s) 863
AflIII ACRYGT 1 cut(s) 556
AgeI ACCGGT 1 cut(s) 455
AgsI TTSAA 5 cut(s) 88, 168, 218, 401, 728
AhlI ACTAGT 1 cut(s) 700
AjnI CCWGG 1 cut(s) 595
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 6 cut(s) 100, 147, 392, 406, 434, 731
AluI AGCT 6 cut(s) 100, 147, 392, 406, 434, 731
AlwI GGATC 6 cut(s) 180, 266, 639, 764, 809, 854
AlwNI CAGNNNCTG 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 392, 834
ApoI RAATTY 6 cut(s) 20, 83, 540, 580, 820, 884
AsiGI ACCGGT 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 634, 697
AsuII TTCGAA 1 cut(s) 544
BaeI ACNNNNGTAYC 4 cut(s) 300, 300, 333, 333
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 2 cut(s) 379, 846
BccI CCATC 2 cut(s) 278, 837
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 597
BciVI GTATCC 1 cut(s) 512
BcuI ACTAGT 1 cut(s) 700
BfaI CTAG 4 cut(s) 407, 701, 890, 932
BfmI CTRYAG 1 cut(s) 669
BfuI GTATCC 1 cut(s) 512
BisI GCNGC 3 cut(s) 393, 757, 835
BlsI GCNGC 3 cut(s) 394, 758, 836
Bme1390I CCNGG 1 cut(s) 597
BmrFI CCNGG 1 cut(s) 597
BpmI CTGGAG 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 870
Bpu14I TTCGAA 1 cut(s) 544
BpuEI CTTGAG 2 cut(s) 815, 845
Bsa29I ATCGAT 1 cut(s) 414
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 863
Bse118I RCCGGY 2 cut(s) 305, 455
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 597
BseCI ATCGAT 1 cut(s) 414
BseGI GGATG 4 cut(s) 208, 289, 556, 848
BseLI CCNNNNNNNGG 1 cut(s) 863
BseMII CTCAG 2 cut(s) 734, 861
BseNI ACTGG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 379, 846
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 43
BshTI ACCGGT 1 cut(s) 455
BshVI ATCGAT 1 cut(s) 414
BsiSI CCGG 2 cut(s) 306, 456
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 863
BsmFI GGGAC 1 cut(s) 338
Bsp119I TTCGAA 1 cut(s) 544
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 7 cut(s) 172, 258, 631, 737, 769, 801, 846
BspACI CCGC 4 cut(s) 533, 605, 666, 756
BspCNI CTCAG 2 cut(s) 733, 862
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 1 cut(s) 43
BspPI GGATC 6 cut(s) 180, 266, 639, 764, 809, 854
BspT104I TTCGAA 1 cut(s) 544
BsrFI RCCGGY 2 cut(s) 305, 455
BsrGI TGTACA 1 cut(s) 247
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 2 cut(s) 305, 455
BssMI GATC 7 cut(s) 172, 258, 631, 737, 769, 801, 846
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 2 cut(s) 252, 473
Bst6I CTCTTC 2 cut(s) 188, 684
BstAUI TGTACA 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 544
BstC8I GCNNGC 2 cut(s) 666, 733
BstDEI CTNAG 2 cut(s) 720, 870
BstF5I GGATG 4 cut(s) 208, 289, 556, 848
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 7 cut(s) 175, 261, 634, 740, 772, 804, 849
BstMBI GATC 7 cut(s) 172, 258, 631, 737, 769, 801, 846
BstNI CCWGG 1 cut(s) 597
BstSCI CCNGG 1 cut(s) 595
BstSFI CTRYAG 1 cut(s) 669
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 379, 846
BstX2I RGATCY 3 cut(s) 258, 631, 769
BstYI RGATCY 3 cut(s) 258, 631, 769
Bsu15I ATCGAT 1 cut(s) 414
BsuI GTATCC 1 cut(s) 512
BsuTUI ATCGAT 1 cut(s) 414
BtsCI GGATG 4 cut(s) 208, 289, 556, 848
Cac8I GCNNGC 2 cut(s) 666, 733
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 45
Cfr10I RCCGGY 2 cut(s) 305, 455
ClaI ATCGAT 1 cut(s) 414
Csp6I GTAC 3 cut(s) 248, 309, 939
CspAI ACCGGT 1 cut(s) 455
CviAII CATG 5 cut(s) 111, 138, 255, 661, 679
CviQI GTAC 3 cut(s) 248, 309, 939
DdeI CTNAG 2 cut(s) 720, 870
DpnI GATC 7 cut(s) 174, 260, 633, 739, 771, 803, 848
DpnII GATC 7 cut(s) 172, 258, 631, 737, 769, 801, 846
Eam1104I CTCTTC 2 cut(s) 188, 684
EarI CTCTTC 2 cut(s) 188, 684
Eco57I CTGAAG 3 cut(s) 45, 369, 464
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 595
EcoT22I ATGCAT 1 cut(s) 132
FaeI CATG 5 cut(s) 114, 141, 258, 664, 682
FalI AAGNNNNNCTT 8 cut(s) 136, 168, 198, 230, 420, 452, 777, 809
FaqI GGGAC 1 cut(s) 338
FatI CATG 5 cut(s) 110, 137, 254, 660, 678
FauI CCCGC 2 cut(s) 612, 673
Fnu4HI GCNGC 3 cut(s) 393, 757, 835
FokI GGATG 4 cut(s) 215, 296, 563, 855
Fsp4HI GCNGC 3 cut(s) 393, 757, 835
FspBI CTAG 4 cut(s) 407, 701, 890, 932
GlaI GCGC 1 cut(s) 44
GluI GCNGC 3 cut(s) 393, 757, 835
GsuI CTGGAG 1 cut(s) 297
HapII CCGG 2 cut(s) 306, 456
HhaI GCGC 1 cut(s) 45
Hin1II CATG 5 cut(s) 114, 141, 258, 664, 682
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 3 cut(s) 298, 453, 676
HindII GTYRAC 3 cut(s) 298, 453, 676
HindIII AAGCTT 2 cut(s) 98, 145
HinfI GANTC 2 cut(s) 440, 600
HpaII CCGG 2 cut(s) 306, 456
HphI GGTGA 2 cut(s) 634, 697
Hpy166II GTNNAC 4 cut(s) 298, 453, 676, 895
Hpy188I TCNGA 3 cut(s) 18, 82, 322
Hpy188III TCNNGA 3 cut(s) 437, 785, 794
Hpy8I GTNNAC 4 cut(s) 298, 453, 676, 895
HpyAV CCTTC 3 cut(s) 283, 602, 833
HpyCH4III ACNGT 2 cut(s) 252, 473
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 5 cut(s) 107, 130, 491, 923, 947
HpyF3I CTNAG 2 cut(s) 720, 870
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 5 cut(s) 114, 141, 258, 664, 682
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 7 cut(s) 172, 258, 631, 737, 769, 801, 846
Lsp1109I GCAGC 2 cut(s) 379, 846
MaeI CTAG 4 cut(s) 407, 701, 890, 932
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 2 cut(s) 622, 703
MalI GATC 7 cut(s) 174, 260, 633, 739, 771, 803, 848
MboI GATC 7 cut(s) 172, 258, 631, 737, 769, 801, 846
MboII GAAGA 4 cut(s) 199, 202, 205, 701
MflI RGATCY 3 cut(s) 258, 631, 769
MluCI AATT 6 cut(s) 20, 83, 540, 580, 820, 884
MlyI GAGTC 1 cut(s) 594
MmeI TCCRAC 2 cut(s) 50, 97
MnlI CCTC 5 cut(s) 685, 719, 729, 792, 865
Mph1103I ATGCAT 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 3 cut(s) 336, 584, 714
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 2 cut(s) 306, 456
MspR9I CCNGG 1 cut(s) 597
MvaI CCWGG 1 cut(s) 597
MvnI CGCG 1 cut(s) 43
NdeII GATC 7 cut(s) 172, 258, 631, 737, 769, 801, 846
NlaIII CATG 5 cut(s) 114, 141, 258, 664, 682
NmuCI GTSAC 2 cut(s) 622, 703
NsiI ATGCAT 1 cut(s) 132
NspV TTCGAA 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 440
PfoI TCCNGGA 1 cut(s) 595
PinAI ACCGGT 1 cut(s) 455
PkrI GCNGC 3 cut(s) 394, 758, 836
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 595
PspGI CCWGG 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 3 cut(s) 258, 631, 769
RsaI GTAC 3 cut(s) 249, 310, 940
RsaNI GTAC 3 cut(s) 248, 309, 939
SaqAI TTAA 3 cut(s) 336, 584, 714
SatI GCNGC 3 cut(s) 393, 757, 835
Sau3AI GATC 7 cut(s) 172, 258, 631, 737, 769, 801, 846
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 1 cut(s) 597
SfcI CTRYAG 1 cut(s) 669
SfuI TTCGAA 1 cut(s) 544
SmlI CTYRAG 2 cut(s) 794, 860
SmoI CTYRAG 2 cut(s) 794, 860
SpeI ACTAGT 1 cut(s) 700
Sse9I AATT 6 cut(s) 20, 83, 540, 580, 820, 884
SsiI CCGC 4 cut(s) 533, 605, 666, 756
SspMI CTAG 4 cut(s) 407, 701, 890, 932
StyD4I CCNGG 1 cut(s) 595
TaaI ACNGT 2 cut(s) 252, 473
TaiI ACGT 1 cut(s) 559
TaqI TCGA 3 cut(s) 414, 544, 904
TasI AATT 6 cut(s) 20, 83, 540, 580, 820, 884
TatI WGTACW 2 cut(s) 247, 938
TauI GCSGC 1 cut(s) 759
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 3 cut(s) 336, 584, 714
Tru9I TTAA 3 cut(s) 336, 584, 714
TseFI GTSAC 2 cut(s) 622, 703
TseI GCWGC 2 cut(s) 392, 834
Tsp45I GTSAC 2 cut(s) 622, 703
TspDTI ATGAA 6 cut(s) 219, 240, 567, 631, 698, 770
TspGWI ACGGA 3 cut(s) 537, 563, 589
XapI RAATTY 6 cut(s) 20, 83, 540, 580, 820, 884
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 4 cut(s) 407, 701, 890, 932
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.