Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009475

Physical Location & Seq

Genomic Coordinates Reverse (-)

23581631 .. 23584970

Gene Structure 3340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1148200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGGCTTCAGCTTCTCAAGCTCCCAAATCACACCGTAATCTCCTGCCGTTTTGCAAGAACTAGTTCAAGCTTCTCTTTTCTCTTCTCGCAACCCAACTTACAGGAGCTCACTGCGAGATGGGTCGGAGTGCCAATGCATAGAACCTTTGCTTCTGTGAAGTTTGCAAAGGCTCAACCACCAAAGAAGAGGAAGAGGCTAGATGAGGTATGCCTCGAGAGGTTTCAACAGTATAGTCGAACCTTCATCCAGTCATGGATCTTACAAGGGAAAGTATTTGTGGATGGAAAGGTAGTCAACAAAGCCGGGACTCCAGTCTCGGACAAAGCTGTTGTACATATAATGGCTGAAGTCCCAAAATATGTATGTAGAGCAGGACACAAGTTAGAAGCTGCCATTGAACAGCTAGGTATTGATGTTTCGGGCAAAGTAGCTCTTGATTCTGGGTTGTCAACTGGTGGATTTACTGACTGCTTACTTCAGTACGGTGCATCATTTGTTTATGGAGTTGATGTAGGTTATGGGCAGGTGGCAGAAAAAATTCGGACGCATGAACTTGTTAGCGTGATAGAAAGAACAAATTTAAGATACCTTCCTGGACTCCCTCAAAAAGTTGACTTGGTGACTTTGGACCTCTCTTTCATCTCCATTCTATTGCAGGTCATGCCTGCTATAGTCAATGTGATGAAGGAAGAGGCGACACTGGTCACCCTGGTTAAACCTCAATTTGAAGCTCGCAGATCACAAGTAGGAAGTGGTGGGATTGTGAGGGATCCATTAATCCATCAAGAAGTTCTTGATAGGATTATCAAGGGTGTAGAGAATTTTGGATTTAGCAGCAAAGGATGGATCGAGTCTCCACTTAAGGGTGCTGAGGGCAATACAGAATTCCTCGTTCACTTTACTCGGACAGCTAAGAGAAGTGAGGATGAACTTAAAACGTTAAATATGACAGAACCTGTTCATTCTCCCGAATCTGCCATTAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FtsJ S4

Protein Analysis

331

Amino Acids

36.67

Weight (kDa)

9.16

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S4	PF01479	66 - 111	2.2e-09	S4 domain
FtsJ	PF01728	121 - 302	7.8e-37	FtsJ-like methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25470
fragaria_vesca	FvH4_2g17480 FvH4_2g17480 FvH4_2g17480
malus_domestica	MD10G1148200.v1.1
prunus_persica	Prupe.8G187200_v2.0.a1 Prupe.8G187200_v2.0.a1
pyrus_communis	pycom10g12820
rosa_chinensis	RchiOBHm_Chr5g0065021 RchiOBHm_Chr6g0282221
rosa_laevigata	RLG00000012900
rosa_multiflora	Rmu_co8177566.1_g000001 Rmu_sc0011940.1_g000011 Rmu_sc0014549.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186390
rosa_rugosa	Rorug06G0146300 Rorug06G0146400
rosa_samantha	Rh6AG259500 Rh6BG262800 Rh6CG261700 Rh6DG253700
rosa_wichuraiana	Rw6G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	517
Acc36I	ACCTGC	2 cut(s)	517, 649
AclI	AACGTT	1 cut(s)	941
AclWI	GGATC	4 cut(s)	266, 767, 780, 857
AcsI	RAATTY	4 cut(s)	540, 580, 823, 887
AcuI	CTGAAG	2 cut(s)	369, 464
AfaI	GTAC	2 cut(s)	336, 485
AfiI	CCNNNNNNNGG	1 cut(s)	866
AflII	CTTAAG	1 cut(s)	863
AgsI	TTSAA	4 cut(s)	69, 227, 401, 731
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	595, 711
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	322, 861
AlwI	GGATC	4 cut(s)	266, 767, 780, 857
AlwNI	CAGNNNCTG	1 cut(s)	959
Ama87I	CYCGRG	1 cut(s)	215
ApeKI	GCWGC	2 cut(s)	392, 837
ApoI	RAATTY	4 cut(s)	540, 580, 823, 887
AseI	ATTAAT	1 cut(s)	779
Asp700I	GAANNNNTTC	3 cut(s)	64, 540, 960
AspS9I	GGNCC	1 cut(s)	631
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	634, 700
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	631
BamHI	GGATCC	1 cut(s)	772
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	873
BbvI	GCAGC	2 cut(s)	379, 849
BccI	CCATC	4 cut(s)	114, 278, 792, 840
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	597, 713
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	322, 861
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	3 cut(s)	63, 200, 407
BfmI	CTRYAG	1 cut(s)	672
BfrI	CTTAAG	1 cut(s)	863
BfuAI	ACCTGC	2 cut(s)	517, 649
BisI	GCNGC	2 cut(s)	393, 838
BlsI	GCNGC	2 cut(s)	394, 839
Bme1390I	CCNGG	3 cut(s)	307, 597, 713
Bme18I	GGWCC	1 cut(s)	631
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	1 cut(s)	774
BmrFI	CCNGG	3 cut(s)	307, 597, 713
BmsI	GCATC	1 cut(s)	500
BoxI	GACNNNNGTC	2 cut(s)	314, 704
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	873
BpuMI	CCSGG	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	711
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse1I	ACTGG	4 cut(s)	250, 314, 460, 708
BseBI	CCWGG	2 cut(s)	597, 713
BseDI	CCNNGG	1 cut(s)	711
BseGI	GGATG	4 cut(s)	246, 289, 851, 934
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	4 cut(s)	250, 314, 460, 708
BseXI	GCAGC	2 cut(s)	379, 849
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	2 cut(s)	322, 338
BslI	CCNNNNNNNGG	1 cut(s)	866
BsmAI	GTCTC	2 cut(s)	322, 861
BsmFI	GGGAC	2 cut(s)	322, 338
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	258, 740, 772, 849
BspCNI	CTCAG	1 cut(s)	865
BspLI	GGNNCC	1 cut(s)	774
BspMI	ACCTGC	2 cut(s)	517, 649
BspPI	GGATC	4 cut(s)	266, 767, 780, 857
BspTI	CTTAAG	1 cut(s)	863
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	4 cut(s)	250, 314, 460, 708
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	4 cut(s)	258, 740, 772, 849
Bst2UI	CCWGG	2 cut(s)	597, 713
Bst4CI	ACNGT	3 cut(s)	37, 231, 488
Bst6I	CTCTTC	4 cut(s)	89, 182, 188, 687
BstAFI	CTTAAG	1 cut(s)	863
BstAPI	GCANNNNNTGC	1 cut(s)	664
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	669, 736
BstDEI	CTNAG	2 cut(s)	873, 915
BstEII	GGTNACC	1 cut(s)	706
BstF5I	GGATG	4 cut(s)	246, 289, 851, 934
BstKTI	GATC	4 cut(s)	261, 743, 775, 852
BstMAI	GTCTC	2 cut(s)	322, 861
BstMBI	GATC	4 cut(s)	258, 740, 772, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 664
BstNI	CCWGG	2 cut(s)	597, 713
BstPAI	GACNNNNGTC	2 cut(s)	314, 704
BstPI	GGTNACC	1 cut(s)	706
BstSCI	CCNGG	3 cut(s)	305, 595, 711
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	2 cut(s)	379, 849
BstX2I	RGATCY	2 cut(s)	258, 772
BstYI	RGATCY	2 cut(s)	258, 772
BtsCI	GGATG	4 cut(s)	246, 289, 851, 934
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 701
BveI	ACCTGC	2 cut(s)	517, 649
Cac8I	GCNNGC	2 cut(s)	669, 736
CaiI	CAGNNNCTG	1 cut(s)	959
Cfr13I	GGNCC	1 cut(s)	631
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	335, 484
CviAII	CATG	3 cut(s)	255, 551, 664
CviQI	GTAC	2 cut(s)	335, 484
DdeI	CTNAG	2 cut(s)	873, 915
DpnI	GATC	4 cut(s)	260, 742, 774, 851
DpnII	GATC	4 cut(s)	258, 740, 772, 849
Eam1104I	CTCTTC	4 cut(s)	89, 182, 188, 687
EarI	CTCTTC	4 cut(s)	89, 182, 188, 687
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	631
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	2 cut(s)	369, 464
Eco88I	CYCGRG	1 cut(s)	215
Eco91I	GGTNACC	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	887
EcoRII	CCWGG	2 cut(s)	595, 711
EcoT22I	ATGCAT	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	3 cut(s)	258, 554, 667
FalI	AAGNNNNNCTT	6 cut(s)	61, 93, 420, 452, 780, 812
FaqI	GGGAC	2 cut(s)	322, 338
FatI	CATG	3 cut(s)	254, 550, 663
Fnu4HI	GCNGC	2 cut(s)	393, 838
FokI	GGATG	4 cut(s)	233, 296, 858, 941
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	393, 838
FspBI	CTAG	3 cut(s)	63, 200, 407
GluI	GCNGC	2 cut(s)	393, 838
GsuI	CTGGAG	1 cut(s)	297
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	556
Hin1II	CATG	3 cut(s)	258, 554, 667
HincII	GTYRAC	3 cut(s)	298, 453, 616
HindII	GTYRAC	3 cut(s)	298, 453, 616
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	5 cut(s)	310, 440, 600, 854, 974
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	2 cut(s)	634, 700
Hpy166II	GTNNAC	4 cut(s)	298, 453, 616, 898
Hpy188I	TCNGA	4 cut(s)	128, 322, 546, 909
Hpy188III	TCNNGA	5 cut(s)	217, 437, 788, 797, 971
Hpy8I	GTNNAC	4 cut(s)	298, 453, 616, 898
HpyAV	CCTTC	3 cut(s)	253, 602, 682
HpyCH4III	ACNGT	3 cut(s)	37, 231, 488
HpyCH4IV	ACGT	1 cut(s)	941
HpyCH4V	TGCA	5 cut(s)	56, 139, 167, 491, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 664
HpyF3I	CTNAG	2 cut(s)	873, 915
HpySE526I	ACGT	1 cut(s)	941
Hsp92II	CATG	3 cut(s)	258, 554, 667
Kzo9I	GATC	4 cut(s)	258, 740, 772, 849
LmnI	GCTCC	2 cut(s)	27, 106
Lsp1109I	GCAGC	2 cut(s)	379, 849
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	3 cut(s)	63, 200, 407
MaeII	ACGT	1 cut(s)	941
MaeIII	GTNAC	2 cut(s)	622, 706
MalI	GATC	4 cut(s)	260, 742, 774, 851
MboI	GATC	4 cut(s)	258, 740, 772, 849
MboII	GAAGA	4 cut(s)	76, 199, 205, 704
MflI	RGATCY	2 cut(s)	258, 772
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	5 cut(s)	540, 580, 725, 823, 887
MlyI	GAGTC	3 cut(s)	304, 594, 863
MmeI	TCCRAC	1 cut(s)	106
Mph1103I	ATGCAT	1 cut(s)	141
MroXI	GAANNNNTTC	3 cut(s)	64, 540, 960
MseI	TTAA	7 cut(s)	584, 717, 779, 864, 936, 944, 984
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	307, 597, 713
MvaI	CCWGG	2 cut(s)	597, 713
MwoI	GCNNNNNNNGC	2 cut(s)	19, 664
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	4 cut(s)	258, 740, 772, 849
NlaIII	CATG	3 cut(s)	258, 554, 667
NlaIV	GGNNCC	1 cut(s)	774
NmuCI	GTSAC	2 cut(s)	622, 706
NsiI	ATGCAT	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	215
PaqCI	CACCTGC	1 cut(s)	517
PdmI	GAANNNNTTC	3 cut(s)	64, 540, 960
PfeI	GAWTC	2 cut(s)	440, 974
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	2 cut(s)	394, 839
PleI	GAGTC	3 cut(s)	304, 594, 862
PpsI	GAGTC	3 cut(s)	304, 594, 862
PshAI	GACNNNNGTC	2 cut(s)	314, 704
PshBI	ATTAAT	1 cut(s)	779
Psp124BI	GAGCTC	1 cut(s)	111
Psp1406I	AACGTT	1 cut(s)	941
Psp6I	CCWGG	2 cut(s)	595, 711
PspEI	GGTNACC	1 cut(s)	706
PspGI	CCWGG	2 cut(s)	595, 711
PspN4I	GGNNCC	1 cut(s)	774
PspPI	GGNCC	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	258, 772
RsaI	GTAC	2 cut(s)	336, 485
RsaNI	GTAC	2 cut(s)	335, 484
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	7 cut(s)	584, 717, 779, 864, 936, 944, 984
SatI	GCNGC	2 cut(s)	393, 838
Sau3AI	GATC	4 cut(s)	258, 740, 772, 849
Sau96I	GGNCC	1 cut(s)	631
SchI	GAGTC	3 cut(s)	304, 594, 863
ScrFI	CCNGG	3 cut(s)	307, 597, 713
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	672
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	631
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	17, 215, 863
SmoI	CTYRAG	3 cut(s)	17, 215, 863
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	5 cut(s)	540, 580, 725, 823, 887
SspMI	CTAG	3 cut(s)	63, 200, 407
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	305, 595, 711
TaaI	ACNGT	3 cut(s)	37, 231, 488
TaiI	ACGT	1 cut(s)	944
TaqI	TCGA	3 cut(s)	216, 238, 852
TasI	AATT	5 cut(s)	540, 580, 725, 823, 887
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	2 cut(s)	440, 974
Tru1I	TTAA	7 cut(s)	584, 717, 779, 864, 936, 944, 984
Tru9I	TTAA	7 cut(s)	584, 717, 779, 864, 936, 944, 984
TscAI	CASTG	2 cut(s)	118, 708
TseFI	GTSAC	2 cut(s)	622, 706
TseI	GCWGC	2 cut(s)	392, 837
Tsp45I	GTSAC	2 cut(s)	622, 706
TspDTI	ATGAA	6 cut(s)	235, 567, 631, 701, 945, 953
TspRI	CASTG	2 cut(s)	118, 708
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	631
VspI	ATTAAT	1 cut(s)	779
XapI	RAATTY	4 cut(s)	540, 580, 823, 887
XhoI	CTCGAG	1 cut(s)	215
XmnI	GAANNNNTTC	3 cut(s)	64, 540, 960
XspI	CTAG	3 cut(s)	63, 200, 407
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.