Rh6CG261700

FtsJ-like methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009475
Physical Location & Seq
Reverse (-)
43435103 .. 43437839
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG261700.1

Sequence Viewer

Length: 540 bp
ATGGCATTTCAGGTTCTGAAATTTCCGAGTCACATCATCTCGCGCCGTTTTAGCAGAACTTCAGGCTTCTATTTCCTATCCGAATTCAACTCACATAAGCTCCCTGCAAGATGGGTTGGAGTGCCAATGCATGGTCCCTGTAGAAGCTTTGCTGCTGTGAAGTTATCAAAGGATCAAACACCAAAGAAGAAGAAGAGACTGGATGAAGTGTGCCTTGAAAGGTATGAACAATATAGCCGAACCCACGTCATGCCCGCTGTAGTCAATGTGATGAAAGAAGAGGCAACATTAGTCACCCTGGTTAAACCTCAGTTTGAAGCTCGCAGATCACAAGTAGGGAGTGGTGGCATTGTAAGAGATCCATTAGTTCATCAAGAAGTTCTTGAGAGGATCATCAAAGGTGTGGAGAATTTTGGATTTAACAGCAAAGGATGGATAGAGTCTCCTCTCAAGGGTGCTGAGGGCAATATAGAATTTCTAGTTCACTTTACTCGAACAGCTGAGAAAAGTGCGGAGAACTTAGAATGTACTTCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FtsJ S4

Protein Analysis

179

Amino Acids

20.34

Weight (kDa)

9.57

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FtsJ PF01728 89 - 164 1.1e-09 FtsJ-like methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 131
AccII CGCG 1 cut(s) 43
AciI CCGC 2 cut(s) 255, 512
AclWI GGATC 3 cut(s) 180, 353, 398
AcsI RAATTY 4 cut(s) 20, 83, 409, 473
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 2 cut(s) 131, 452
AgsI TTSAA 3 cut(s) 88, 218, 317
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 4 cut(s) 100, 147, 320, 500
AluI AGCT 4 cut(s) 100, 147, 320, 500
Alw26I GTCTC 2 cut(s) 190, 447
AlwI GGATC 3 cut(s) 180, 353, 398
AlwNI CAGNNNCTG 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 4 cut(s) 20, 83, 409, 473
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 105, 426
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 190, 447
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 2 cut(s) 139, 258
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 299
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 2 cut(s) 404, 434
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 452
Bse1I ACTGG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 208, 437
BseLI CCNNNNNNNGG 2 cut(s) 131, 452
BseMII CTCAG 3 cut(s) 323, 450, 492
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 131, 452
BsmAI GTCTC 2 cut(s) 190, 447
BsmFI GGGAC 1 cut(s) 120
Bsp143I GATC 4 cut(s) 172, 326, 358, 390
BspACI CCGC 2 cut(s) 255, 512
BspCNI CTCAG 3 cut(s) 322, 451, 493
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 3 cut(s) 180, 353, 398
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 4 cut(s) 172, 326, 358, 390
Bst2UI CCWGG 1 cut(s) 299
Bst6I CTCTTC 2 cut(s) 188, 273
BstC8I GCNNGC 2 cut(s) 255, 322
BstDEI CTNAG 4 cut(s) 309, 459, 501, 520
BstF5I GGATG 2 cut(s) 208, 437
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 4 cut(s) 175, 329, 361, 393
BstMAI GTCTC 2 cut(s) 190, 447
BstMBI GATC 4 cut(s) 172, 326, 358, 390
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 2 cut(s) 139, 258
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 208, 437
Cac8I GCNNGC 2 cut(s) 255, 322
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 528
CviAII CATG 2 cut(s) 131, 250
CviJI RGCY 6 cut(s) 66, 100, 147, 237, 320, 500
CviKI_1 RGCY 6 cut(s) 66, 100, 147, 237, 320, 500
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 4 cut(s) 309, 459, 501, 520
DpnI GATC 4 cut(s) 174, 328, 360, 392
DpnII GATC 4 cut(s) 172, 326, 358, 390
Eam1104I CTCTTC 2 cut(s) 188, 273
EarI CTCTTC 2 cut(s) 188, 273
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 132
FaeI CATG 2 cut(s) 134, 253
FaiI YATR 7 cut(s) 96, 132, 225, 234, 251, 470, 538
FalI AAGNNNNNCTT 4 cut(s) 198, 230, 366, 398
FaqI GGGAC 1 cut(s) 120
FatI CATG 2 cut(s) 130, 249
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 215, 444
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 479
GlaI GCGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 153
HhaI GCGC 1 cut(s) 45
Hin1II CATG 2 cut(s) 134, 253
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 2 cut(s) 28, 440
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 3 cut(s) 18, 27, 82
Hpy188III TCNNGA 2 cut(s) 374, 383
Hpy8I GTNNAC 1 cut(s) 484
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 3 cut(s) 107, 130, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 4 cut(s) 309, 459, 501, 520
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 134, 253
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 4 cut(s) 172, 326, 358, 390
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 6 cut(s) 48, 117, 151, 185, 284, 311
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 1 cut(s) 479
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 29, 292
MalI GATC 4 cut(s) 174, 328, 360, 392
MboI GATC 4 cut(s) 172, 326, 358, 390
MboII GAAGA 4 cut(s) 199, 202, 205, 290
MflI RGATCY 1 cut(s) 358
MluCI AATT 4 cut(s) 20, 83, 409, 473
MlyI GAGTC 2 cut(s) 37, 449
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 5 cut(s) 274, 318, 381, 454, 456
Mph1103I ATGCAT 1 cut(s) 132
MseI TTAA 2 cut(s) 303, 420
MspA1I CMGCKG 2 cut(s) 257, 500
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeII GATC 4 cut(s) 172, 326, 358, 390
NlaIII CATG 2 cut(s) 134, 253
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 29, 292
NsiI ATGCAT 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 131
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 36, 448
PpsI GAGTC 2 cut(s) 36, 448
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
SaqAI TTAA 2 cut(s) 303, 420
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 4 cut(s) 172, 326, 358, 390
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 2 cut(s) 37, 449
ScrFI CCNGG 1 cut(s) 299
SetI ASST 9 cut(s) 15, 102, 149, 224, 249, 310, 322, 403, 502
SfcI CTRYAG 2 cut(s) 139, 258
SinI GGWCC 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 383, 449
SmoI CTYRAG 2 cut(s) 383, 449
Sse9I AATT 4 cut(s) 20, 83, 409, 473
SsiI CCGC 2 cut(s) 255, 512
SspMI CTAG 1 cut(s) 479
StyD4I CCNGG 1 cut(s) 297
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 493
TasI AATT 4 cut(s) 20, 83, 409, 473
TatI WGTACW 1 cut(s) 527
Tru1I TTAA 2 cut(s) 303, 420
Tru9I TTAA 2 cut(s) 303, 420
TseFI GTSAC 2 cut(s) 29, 292
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 2 cut(s) 29, 292
TspDTI ATGAA 4 cut(s) 219, 240, 287, 359
Van91I CCANNNNNTGG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 4 cut(s) 20, 83, 409, 473
XspI CTAG 1 cut(s) 479
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.