Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009475

Physical Location & Seq

Genomic Coordinates Reverse (-)

47745585 .. 47748326

Gene Structure 2742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCATTTCAGGTTCTGAAATTTCCGAGTCACATCATCTCGCGCCGTTTTAGCAGAACTTCAGGCTTCTATTTCCTATCCGAATTCAACTCACATAAGCTCCCTGCAAGATGGGTTGGAGTGCCAATGCATGGTCCTTGTAGAAGCTTTGCTGCTGTGAAGTTATCAAAGGATCAAACACCAAAGAAGAAGAAGAGACTGGATGAAGTGTGCCTTGAAAGGTATGAACAATATAGCCGAACCTACGTACAGTCATGGATCTTACAAGGGAAAGTATTGGTCGATGGGAAGGTGGTCAACAAAGCCGGTACTCCAGTCTCTGATAAATCTGTTGTAAAGATTATGGCTGAAGTCCCCAAATATGTATGTAGAGCAGGACACAAGTTAGAAGCTGCAATTGAACAGCTAGGTATTGATGTTTCTGGCAAAGTAGCTCTTGATTCAGGGTTGTCAACCAGTGGATTTACCGACTGTTTACTTCAGTATGGTGCATCATTTGTTTATGGAGTCGATGTAGGATATGGACAGGTCATGCCCGCTGTAGTCAATGTGATGAAAGAAGAGGCAACATTAGTCACCCTGGTTAAACCTCAGTTTGAAGCTCGCAGATCACAAGTAGGGAGTGGTGGCATTGTAAGAGATCCATTAGTTCATCAAGAAGTTCTTGAGAGGATCATCAAAGGTGTTGAGAATTTTGGATTTAGCAGCAAAGGATGGATAGAGTCTCCTCTCAAGGGTGCTGAGGGCAATATAGAATTTCTAGTTCACTTTACTCGAACAGCTGAGAAAAGTGCGGAGAACTTAGAATGTACTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FtsJ S4

Protein Analysis

273

Amino Acids

30.18

Weight (kDa)

9.18

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S4	PF01479	66 - 110	1.4e-09	S4 domain
FtsJ	PF01728	121 - 180	2.5e-13	FtsJ-like methyltransferase
FtsJ	PF01728	187 - 258	4e-09	FtsJ-like methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25470
fragaria_vesca	FvH4_2g17480 FvH4_2g17480 FvH4_2g17480
malus_domestica	MD10G1148200.v1.1
prunus_persica	Prupe.8G187200_v2.0.a1 Prupe.8G187200_v2.0.a1
pyrus_communis	pycom10g12820
rosa_chinensis	RchiOBHm_Chr5g0065021 RchiOBHm_Chr6g0282221
rosa_laevigata	RLG00000012900
rosa_multiflora	Rmu_co8177566.1_g000001 Rmu_sc0011940.1_g000011 Rmu_sc0014549.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186390
rosa_rugosa	Rorug06G0146300 Rorug06G0146400
rosa_samantha	Rh6AG259500 Rh6BG262800 Rh6CG261700 Rh6DG253700
rosa_wichuraiana	Rw6G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccII	CGCG	1 cut(s)	43
AciI	CCGC	2 cut(s)	537, 794
AclWI	GGATC	4 cut(s)	180, 266, 635, 680
AcsI	RAATTY	4 cut(s)	20, 83, 691, 755
AcuI	CTGAAG	3 cut(s)	45, 369, 464
AfaI	GTAC	3 cut(s)	249, 310, 811
AfiI	CCNNNNNNNGG	2 cut(s)	131, 734
AgsI	TTSAA	4 cut(s)	88, 218, 401, 599
AjnI	CCWGG	1 cut(s)	579
AluBI	AGCT	7 cut(s)	100, 147, 392, 406, 434, 602, 782
AluI	AGCT	7 cut(s)	100, 147, 392, 406, 434, 602, 782
Alw26I	GTCTC	3 cut(s)	190, 322, 729
AlwI	GGATC	4 cut(s)	180, 266, 635, 680
AlwNI	CAGNNNCTG	2 cut(s)	16, 320
ApeKI	GCWGC	3 cut(s)	152, 392, 705
ApoI	RAATTY	4 cut(s)	20, 83, 691, 755
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	134
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	3 cut(s)	139, 379, 717
BccI	CCATC	3 cut(s)	105, 278, 708
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	581
BcoDI	GTCTC	3 cut(s)	190, 322, 729
BfaI	CTAG	2 cut(s)	407, 761
BfmI	CTRYAG	1 cut(s)	540
BisI	GCNGC	3 cut(s)	153, 393, 706
BlsI	GCNGC	3 cut(s)	154, 394, 707
Bme1390I	CCNGG	1 cut(s)	581
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	581
BmsI	GCATC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	2 cut(s)	686, 716
BsaAI	YACGTR	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	579
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 498, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 734
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	3 cut(s)	204, 314, 456
BseBI	CCWGG	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	2 cut(s)	208, 719
BseLI	CCNNNNNNNGG	2 cut(s)	131, 734
BseMII	CTCAG	3 cut(s)	605, 732, 774
BseNI	ACTGG	3 cut(s)	204, 314, 456
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	3 cut(s)	139, 379, 717
Bsh1236I	CGCG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	131, 734
BsmAI	GTCTC	3 cut(s)	190, 322, 729
BsmFI	GGGAC	1 cut(s)	338
Bsp143I	GATC	5 cut(s)	172, 258, 608, 640, 672
BspACI	CCGC	2 cut(s)	537, 794
BspCNI	CTCAG	3 cut(s)	604, 733, 775
BspFNI	CGCG	1 cut(s)	43
BspPI	GGATC	4 cut(s)	180, 266, 635, 680
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	204, 314, 456
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	5 cut(s)	172, 258, 608, 640, 672
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	2 cut(s)	252, 473
Bst6I	CTCTTC	2 cut(s)	188, 555
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	537, 604
BstDEI	CTNAG	4 cut(s)	591, 741, 783, 802
BstF5I	GGATG	2 cut(s)	208, 719
BstFNI	CGCG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	5 cut(s)	175, 261, 611, 643, 675
BstMAI	GTCTC	3 cut(s)	190, 322, 729
BstMBI	GATC	5 cut(s)	172, 258, 608, 640, 672
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	579
BstSFI	CTRYAG	1 cut(s)	540
BstSNI	TACGTA	1 cut(s)	247
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	139, 379, 717
BstX2I	RGATCY	2 cut(s)	258, 640
BstYI	RGATCY	2 cut(s)	258, 640
BtsCI	GGATG	2 cut(s)	208, 719
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	537, 604
CaiI	CAGNNNCTG	2 cut(s)	16, 320
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	3 cut(s)	248, 309, 810
CviAII	CATG	3 cut(s)	131, 255, 532
CviQI	GTAC	3 cut(s)	248, 309, 810
DdeI	CTNAG	4 cut(s)	591, 741, 783, 802
DpnI	GATC	5 cut(s)	174, 260, 610, 642, 674
DpnII	GATC	5 cut(s)	172, 258, 608, 640, 672
Eam1104I	CTCTTC	2 cut(s)	188, 555
EarI	CTCTTC	2 cut(s)	188, 555
Eco105I	TACGTA	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	3 cut(s)	45, 369, 464
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	579
EcoT22I	ATGCAT	1 cut(s)	132
FaeI	CATG	3 cut(s)	134, 258, 535
FalI	AAGNNNNNCTT	6 cut(s)	198, 230, 420, 452, 648, 680
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	3 cut(s)	130, 254, 531
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	153, 393, 706
FokI	GGATG	2 cut(s)	215, 726
Fsp4HI	GCNGC	3 cut(s)	153, 393, 706
FspBI	CTAG	2 cut(s)	407, 761
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	3 cut(s)	153, 393, 706
GsuI	CTGGAG	1 cut(s)	297
HapII	CCGG	1 cut(s)	306
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	134, 258, 535
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	2 cut(s)	298, 453
HindII	GTYRAC	2 cut(s)	298, 453
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	4 cut(s)	28, 440, 507, 722
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	4 cut(s)	298, 453, 476, 766
Hpy188I	TCNGA	4 cut(s)	18, 27, 82, 322
Hpy188III	TCNNGA	3 cut(s)	437, 656, 665
Hpy8I	GTNNAC	4 cut(s)	298, 453, 476, 766
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	2 cut(s)	252, 473
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	5 cut(s)	107, 130, 395, 491, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	4 cut(s)	591, 741, 783, 802
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	134, 258, 535
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	172, 258, 608, 640, 672
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	3 cut(s)	139, 379, 717
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	2 cut(s)	407, 761
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	29, 574
MalI	GATC	5 cut(s)	174, 260, 610, 642, 674
MboI	GATC	5 cut(s)	172, 258, 608, 640, 672
MboII	GAAGA	4 cut(s)	199, 202, 205, 572
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	2 cut(s)	258, 640
MluCI	AATT	5 cut(s)	20, 83, 396, 691, 755
MlyI	GAGTC	3 cut(s)	37, 516, 731
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	5 cut(s)	556, 600, 663, 736, 738
Mph1103I	ATGCAT	1 cut(s)	132
MseI	TTAA	1 cut(s)	585
MspA1I	CMGCKG	2 cut(s)	539, 782
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	581
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	581
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	5 cut(s)	172, 258, 608, 640, 672
NlaIII	CATG	3 cut(s)	134, 258, 535
NmuCI	GTSAC	2 cut(s)	29, 574
NsiI	ATGCAT	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	154, 394, 707
PleI	GAGTC	3 cut(s)	36, 515, 730
PpsI	GAGTC	3 cut(s)	36, 515, 730
Ppu21I	YACGTR	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	134
PstNI	CAGNNNCTG	2 cut(s)	16, 320
PsuI	RGATCY	2 cut(s)	258, 640
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	3 cut(s)	249, 310, 811
RsaNI	GTAC	3 cut(s)	248, 309, 810
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	3 cut(s)	153, 393, 706
Sau3AI	GATC	5 cut(s)	172, 258, 608, 640, 672
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	3 cut(s)	37, 516, 731
ScrFI	CCNGG	1 cut(s)	581
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	665, 731
SmoI	CTYRAG	2 cut(s)	665, 731
SnaBI	TACGTA	1 cut(s)	247
Sse9I	AATT	5 cut(s)	20, 83, 396, 691, 755
SsiI	CCGC	2 cut(s)	537, 794
SspMI	CTAG	2 cut(s)	407, 761
StyD4I	CCNGG	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	252, 473
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	282, 510, 775
TasI	AATT	5 cut(s)	20, 83, 396, 691, 755
TatI	WGTACW	1 cut(s)	809
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	2 cut(s)	29, 574
TseI	GCWGC	3 cut(s)	152, 392, 705
Tsp45I	GTSAC	2 cut(s)	29, 574
TspDTI	ATGAA	4 cut(s)	219, 240, 569, 641
TspRI	CASTG	1 cut(s)	463
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	4 cut(s)	20, 83, 691, 755
XspI	CTAG	2 cut(s)	407, 761
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.