Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005041

Physical Location & Seq

Genomic Coordinates Forward (+)

9292345 .. 9294456

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGAATCCAATTCAAGAGATTATTGAGAAACAAGTTCTAACGGTAGCGAAAGCTATGGAGGATAAGATAGACGACGAGATAGCGTCTCTGGAAAAGCTTGATGAAGATGATTTGGAAGTTTTGAGAGAGAGGAGATTGAAGCAGATGAAGAAAATGGCGGAGAAGAAGAAACGGTGGATGAGTATTGGACATGGTGAATACTCTGAGATTCATTCTGAGAAAGATTTCTTCTCCGTTGTTAAATCTAGTGAACGCGTCGTTTGTCACTTCTACCGTGAGAATTGGCCCTGTAAAGTGATGGATAAACACATGAGCATATTGGCAAAGCAACACATTGAGACACGTTTCGTGAAGATCCAAGCTGAGAAAAGTCCATTCTTGGCTGAGAGGCTTAAGATTGTTGTTCTTCCCACTCTTGCCCTCATTAAGAACACTAAAGTCGATGATTATGTGGTTGGGTTCAATGAACTGGGAGGGAAAGATGATTTTAGCACAGAAGATCTTGAAGAGAGAATAGCCAGAGCGCAAGTGATCCATTACGAGGGAGAATCATCTCTTAAACAAAAGTCTACAACACAAGTCAGAAGGAACGTGAGGCAGAGTGCTCGTTCAGATTCTGACTCCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

210

Amino Acids

24.44

Weight (kDa)

6.35

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	67 - 152	3.3e-08	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18990 AT3G25580 AT3G25580
fragaria_vesca	FvH4_2g04710 FvH4_2g04710
malus_domestica	MD05G1093600.v1.1
prunus_persica	Prupe.8G138300_v2.0.a1
pyrus_communis	pycom05g09270
rosa_chinensis	RchiOBHm_Chr6g0254311 RchiOBHm_Chr6g0254341 RchiOBHm_Chr6g0254381
rosa_laevigata	RLG00000014131 RLG00000014920 RLG00000014924
rosa_multiflora	Rmu_sc0006565.1_g000001 Rmu_sc0007138.1_g000010 Rmu_sc0015027.1_g000002 Rmu_sc0020698.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210880 Rroxscaffold_7G00210920 Rroxscaffold_7G00210940
rosa_rugosa	Rorug05G0551900
rosa_samantha	Rh6AG068400 Rh6AG068700 Rh6BG061500 Rh6CG060900 Rh6CG061400 Rh6DG058200 Rh6DG058600
rosa_wichuraiana	Rw6G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	572
AccII	CGCG	1 cut(s)	258
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	352, 529
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	2 cut(s)	256, 344
AgsI	TTSAA	4 cut(s)	17, 142, 466, 509
AluBI	AGCT	3 cut(s)	56, 100, 365
AluI	AGCT	3 cut(s)	56, 100, 365
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	2 cut(s)	93, 335
AlwI	GGATC	2 cut(s)	352, 529
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	610
BccI	CCATC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BcoDI	GTCTC	2 cut(s)	93, 335
BfaI	CTAG	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	395
BglII	AGATCT	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	482
BmuI	ACTGGG	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse1I	ACTGG	1 cut(s)	477
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMII	CTCAG	4 cut(s)	198, 210, 357, 378
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	610
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	2 cut(s)	93, 335
BsmBI	CGTCTC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	3 cut(s)	357, 502, 534
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	4 cut(s)	199, 211, 358, 379
BspFNI	CGCG	1 cut(s)	258
BspPI	GGATC	2 cut(s)	352, 529
BspTI	CTTAAG	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	477
BssMI	GATC	3 cut(s)	357, 502, 534
Bst4CI	ACNGT	3 cut(s)	46, 177, 278
Bst6I	CTCTTC	1 cut(s)	504
BstAFI	CTTAAG	1 cut(s)	395
BstDEI	CTNAG	4 cut(s)	207, 219, 366, 387
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	3 cut(s)	360, 505, 537
BstMAI	GTCTC	2 cut(s)	93, 335
BstMBI	GATC	3 cut(s)	357, 502, 534
BstUI	CGCG	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	357, 502
BstYI	RGATCY	2 cut(s)	357, 502
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	288
CseI	GACGC	2 cut(s)	75, 247
CviAII	CATG	2 cut(s)	194, 313
CviJI	RGCY	7 cut(s)	56, 100, 289, 365, 386, 394, 521
CviKI_1	RGCY	7 cut(s)	56, 100, 289, 365, 386, 394, 521
DdeI	CTNAG	4 cut(s)	207, 219, 366, 387
DpnI	GATC	3 cut(s)	359, 504, 536
DpnII	GATC	3 cut(s)	357, 502, 534
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	2 cut(s)	197, 316
FaiI	YATR	5 cut(s)	59, 195, 314, 320, 453
FatI	CATG	2 cut(s)	193, 312
FblI	GTMKAC	1 cut(s)	572
FokI	GGATG	1 cut(s)	193
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	289
HgaI	GACGC	2 cut(s)	75, 247
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	2 cut(s)	197, 316
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	5 cut(s)	7, 211, 551, 617, 623
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	254, 573
Hpy188I	TCNGA	6 cut(s)	208, 220, 587, 616, 622, 628
Hpy188III	TCNNGA	4 cut(s)	17, 92, 352, 506
Hpy8I	GTNNAC	2 cut(s)	254, 573
Hpy99I	CGWCG	2 cut(s)	80, 263
HpyAV	CCTTC	1 cut(s)	582
HpyCH4III	ACNGT	3 cut(s)	46, 177, 278
HpyCH4IV	ACGT	2 cut(s)	346, 594
HpyF3I	CTNAG	4 cut(s)	207, 219, 366, 387
HpySE526I	ACGT	2 cut(s)	346, 594
Hsp92II	CATG	2 cut(s)	197, 316
HspAI	GCGC	1 cut(s)	527
Kzo9I	GATC	3 cut(s)	357, 502, 534
LpnPI	CCDG	4 cut(s)	77, 304, 458, 535
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	2 cut(s)	346, 594
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	3 cut(s)	359, 504, 536
MboI	GATC	3 cut(s)	357, 502, 534
MboII	GAAGA	9 cut(s)	119, 163, 178, 181, 223, 367, 401, 512, 521
MflI	RGATCY	2 cut(s)	357, 502
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	2 cut(s)	12, 283
MluI	ACGCGT	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	617
MnlI	CCTC	7 cut(s)	55, 126, 384, 434, 470, 538, 591
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	4 cut(s)	243, 396, 429, 561
MspCI	CTTAAG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	258
NdeII	GATC	3 cut(s)	357, 502, 534
NlaIII	CATG	2 cut(s)	197, 316
NmuCI	GTSAC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	4 cut(s)	7, 211, 551, 617
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
PspPI	GGNCC	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	2 cut(s)	357, 502
SaqAI	TTAA	4 cut(s)	243, 396, 429, 561
Sau3AI	GATC	3 cut(s)	357, 502, 534
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	610
SetI	ASST	5 cut(s)	58, 102, 349, 367, 597
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	12, 283
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	46, 177, 278
TaiI	ACGT	2 cut(s)	349, 597
TaqI	TCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	12, 283
TfiI	GAWTC	4 cut(s)	7, 211, 551, 617
Tru1I	TTAA	4 cut(s)	243, 396, 429, 561
Tru9I	TTAA	4 cut(s)	243, 396, 429, 561
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	4 cut(s)	120, 164, 203, 483
TspGWI	ACGGA	1 cut(s)	226
Vha464I	CTTAAG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.