Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005041

Physical Location & Seq

Genomic Coordinates Reverse (-)

59502022 .. 59503626

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGGAACCGAGCCGTCCAAGAGATAATCGAGCAGCAAGTGCTGACGGTGGCGAAGGCGGTGGAGGACAAGCTCGACGAGGAGATCGCAGCCCTAGATCGGGTCGATGACGATGATCTGGAGTACACCGAGATCCCTTCCGAGAAGGACTTCTTCTCCGCCGTCAAGGCCAGTGACCGCGTTGTCTGCCACTTTTACCGCGAAAATTGGCCCTGCAAGGTTGCAGACAAGCACTTGAGCATATTGGCAAAGCAACACATAGAGACATGTTTTATGAAGATCAATGCTGAGAAAAGCCCATTCTTAGCGGAGAAGCTCAAGATTGTTGTTCTTCCAACCCTTGCCCTTATTAAGAATGCCAAAGTGGATGATTATGTGGTTGGATTTGATGAGCTGGGTGGGAAAGACAACTTCAGCACAGAAGAACTAGAGGAGAGGTTGGCTAGAGATCAAGTCATATTTTTTGAAGGTGAAGCATCTTTAAAGTCCAGTGCGAAAAACAGGAGTGTCCGGCAAAGCAGCAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

177

Amino Acids

19.9

Weight (kDa)

4.95

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	47 - 128	3.2e-07	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18990 AT3G25580 AT3G25580
fragaria_vesca	FvH4_2g04710 FvH4_2g04710
malus_domestica	MD05G1093600.v1.1
prunus_persica	Prupe.8G138300_v2.0.a1
pyrus_communis	pycom05g09270
rosa_chinensis	RchiOBHm_Chr6g0254311 RchiOBHm_Chr6g0254341 RchiOBHm_Chr6g0254381
rosa_laevigata	RLG00000014131 RLG00000014920 RLG00000014924
rosa_multiflora	Rmu_sc0006565.1_g000001 Rmu_sc0007138.1_g000010 Rmu_sc0015027.1_g000002 Rmu_sc0020698.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210880 Rroxscaffold_7G00210920 Rroxscaffold_7G00210940
rosa_rugosa	Rorug05G0551900
rosa_samantha	Rh6AG068400 Rh6AG068700 Rh6BG061500 Rh6CG060900 Rh6CG061400 Rh6DG058200 Rh6DG058600
rosa_wichuraiana	Rw6G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccII	CGCG	2 cut(s)	180, 201
AciI	CCGC	5 cut(s)	59, 159, 178, 199, 308
AclWI	GGATC	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	397
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	99, 100
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	467
AluBI	AGCT	3 cut(s)	73, 316, 394
AluI	AGCT	3 cut(s)	73, 316, 394
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	2 cut(s)	168, 209
ApeKI	GCWGC	3 cut(s)	34, 89, 519
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	46, 101
BceAI	ACGGC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	3 cut(s)	95, 428, 444
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	3 cut(s)	35, 90, 520
BlsI	GCNGC	3 cut(s)	36, 91, 521
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	8
BmsI	GCATC	1 cut(s)	485
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	256, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 100
Bse1I	ACTGG	2 cut(s)	171, 489
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	99, 100
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	171, 489
BseRI	GAGGAG	2 cut(s)	95, 446
BseXI	GCAGC	2 cut(s)	46, 101
BseYI	CCCAGC	1 cut(s)	394
Bsh1236I	CGCG	2 cut(s)	180, 201
BshFI	GGCC	2 cut(s)	170, 211
BsiSI	CCGG	1 cut(s)	511
BslI	CCNNNNNNNGG	2 cut(s)	99, 100
BsmAI	GTCTC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	170, 211
Bsp143I	GATC	6 cut(s)	84, 97, 115, 132, 279, 448
BspACI	CCGC	5 cut(s)	59, 159, 178, 199, 308
BspANI	GGCC	2 cut(s)	170, 211
BspCNI	CTCAG	1 cut(s)	280
BspFNI	CGCG	2 cut(s)	180, 201
BspLI	GGNNCC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	171, 489
BssMI	GATC	6 cut(s)	84, 97, 115, 132, 279, 448
Bst4CI	ACNGT	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	288, 304
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	2 cut(s)	180, 201
BstKTI	GATC	6 cut(s)	87, 100, 118, 135, 282, 451
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	6 cut(s)	84, 97, 115, 132, 279, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 167, 186
BstNSI	RCATGY	1 cut(s)	270
BstUI	CGCG	2 cut(s)	180, 201
BstV1I	GCAGC	2 cut(s)	46, 101
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	170, 211
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	178, 496
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	9 cut(s)	14, 73, 92, 170, 211, 297, 316, 394, 443
CviKI_1	RGCY	9 cut(s)	14, 73, 92, 170, 211, 297, 316, 394, 443
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	288, 304
DpnI	GATC	6 cut(s)	86, 99, 117, 134, 281, 450
DpnII	GATC	6 cut(s)	84, 97, 115, 132, 279, 448
DraI	TTTAAA	1 cut(s)	483
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	397
FaeI	CATG	1 cut(s)	270
FaiI	YATR	6 cut(s)	242, 260, 268, 275, 375, 458
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	3 cut(s)	35, 90, 520
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	35, 90, 520
FspBI	CTAG	3 cut(s)	95, 428, 444
GluI	GCNGC	3 cut(s)	35, 90, 520
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	170, 211
HapII	CCGG	1 cut(s)	511
Hin1II	CATG	1 cut(s)	270
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	119, 319
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	4 cut(s)	49, 139, 147, 461
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	216, 224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 167, 186
HpyF3I	CTNAG	2 cut(s)	288, 304
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	6 cut(s)	84, 97, 115, 132, 279, 448
LpnPI	CCDG	7 cut(s)	104, 184, 226, 380, 487, 502, 524
Lsp1109I	GCAGC	2 cut(s)	46, 101
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	3 cut(s)	95, 428, 444
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	6 cut(s)	86, 99, 117, 134, 281, 450
MboI	GATC	6 cut(s)	84, 97, 115, 132, 279, 448
MboII	GAAGA	4 cut(s)	145, 289, 323, 434
MflI	RGATCY	1 cut(s)	132
MluCI	AATT	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	359, 361
MnlI	CCTC	4 cut(s)	58, 73, 424, 429
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	2 cut(s)	351, 482
MspI	CCGG	1 cut(s)	511
Mva1269I	GAATGC	1 cut(s)	361
MvnI	CGCG	2 cut(s)	180, 201
MwoI	GCNNNNNNNGC	3 cut(s)	40, 167, 186
NdeII	GATC	6 cut(s)	84, 97, 115, 132, 279, 448
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	270
PciI	ACATGT	1 cut(s)	266
PctI	GAATGC	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	36, 91, 521
PscI	ACATGT	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	351, 482
SatI	GCNGC	3 cut(s)	35, 90, 520
Sau3AI	GATC	6 cut(s)	84, 97, 115, 132, 279, 448
Sau96I	GGNCC	1 cut(s)	210
SetI	ASST	6 cut(s)	75, 222, 318, 396, 440, 472
SfaNI	GCATC	1 cut(s)	485
SmlI	CTYRAG	2 cut(s)	235, 317
SmoI	CTYRAG	2 cut(s)	235, 317
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	5 cut(s)	59, 159, 178, 199, 308
SspMI	CTAG	3 cut(s)	95, 428, 444
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	3 cut(s)	30, 75, 105
TasI	AATT	1 cut(s)	205
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	2 cut(s)	351, 482
Tru9I	TTAA	2 cut(s)	351, 482
TscAI	CASTG	2 cut(s)	178, 496
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	34, 89, 519
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	178, 496
XceI	RCATGY	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	3 cut(s)	95, 428, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.