Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015027.1

Orthogroup ID

OG0005041

Physical Location & Seq

Genomic Coordinates Reverse (-)

11563 .. 12000

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015027.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgtttacagtttattttcaggttgtggacaagcacttgagcatattggcaaagcaacacatagagacacgttttatgaagatcaatgctgagaaaagtccattcttagcggagaagctcaagattgttgttcttccaacccttgcccttattaagaatgccatagtggatgattatgtggttggatttgatgagctgggtgggaaagacgacttcagcacagaagaactagaggagaggttggctagagctcaagtcatattttttgaaggtgaagcatctttaaagtccagtgcgaaaaccaggagtgtccggcaaagcagcaaggatgactcatcagattcagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

116

Amino Acids

13.09

Weight (kDa)

5.24

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18990 AT3G25580 AT3G25580
fragaria_vesca	FvH4_2g04710 FvH4_2g04710
malus_domestica	MD05G1093600.v1.1
prunus_persica	Prupe.8G138300_v2.0.a1
pyrus_communis	pycom05g09270
rosa_chinensis	RchiOBHm_Chr6g0254311 RchiOBHm_Chr6g0254341 RchiOBHm_Chr6g0254381
rosa_laevigata	RLG00000014131 RLG00000014920 RLG00000014924
rosa_multiflora	Rmu_sc0006565.1_g000001 Rmu_sc0007138.1_g000010 Rmu_sc0015027.1_g000002 Rmu_sc0020698.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210880 Rroxscaffold_7G00210920 Rroxscaffold_7G00210940
rosa_rugosa	Rorug05G0551900
rosa_samantha	Rh6AG068400 Rh6AG068700 Rh6BG061500 Rh6CG060900 Rh6CG061400 Rh6DG058200 Rh6DG058600
rosa_wichuraiana	Rw6G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	302
AluBI	AGCT	3 cut(s)	118, 196, 251
AluI	AGCT	3 cut(s)	118, 196, 251
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	230, 246
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	1 cut(s)	287
BpuEI	CTTGAG	3 cut(s)	58, 104, 237
Bse1I	ACTGG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	304
BseGI	GGATG	2 cut(s)	175, 334
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	333
BseYI	CCCAGC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	291
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	90, 106
BstF5I	GGATG	2 cut(s)	175, 334
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	175, 334
BtsIMutI	CAGTG	1 cut(s)	298
CviJI	RGCY	4 cut(s)	118, 196, 245, 251
CviKI_1	RGCY	4 cut(s)	118, 196, 245, 251
DdeI	CTNAG	2 cut(s)	90, 106
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DraI	TTTAAA	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	253
FaiI	YATR	6 cut(s)	44, 62, 77, 164, 177, 260
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	2 cut(s)	182, 341
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	2 cut(s)	230, 246
GluI	GCNGC	1 cut(s)	322
GsaI	CCCAGC	1 cut(s)	200
HapII	CCGG	1 cut(s)	313
HinfI	GANTC	2 cut(s)	332, 341
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	6, 28
Hpy188I	TCNGA	2 cut(s)	340, 346
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	2 cut(s)	6, 28
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	90, 106
HpySE526I	ACGT	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	81
LpnPI	CCDG	6 cut(s)	5, 182, 289, 304, 316, 326
Lsp1109I	GCAGC	1 cut(s)	333
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	2 cut(s)	230, 246
MaeII	ACGT	1 cut(s)	70
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	3 cut(s)	91, 125, 236
MhlI	GDGCHC	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	161, 163
MnlI	CCTC	2 cut(s)	226, 231
MseI	TTAA	2 cut(s)	153, 284
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	304
NdeII	GATC	1 cut(s)	81
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp124BI	GAGCTC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	302
PspFI	CCCAGC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	153, 284
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	7 cut(s)	24, 73, 120, 198, 242, 253, 274
SfaNI	GCATC	1 cut(s)	287
SmlI	CTYRAG	3 cut(s)	37, 119, 252
SmoI	CTYRAG	3 cut(s)	37, 119, 252
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	2 cut(s)	230, 246
SstI	GAGCTC	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	153, 284
Tru9I	TTAA	2 cut(s)	153, 284
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	1 cut(s)	321
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	298
XspI	CTAG	2 cut(s)	230, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.