Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005041

Physical Location & Seq

Genomic Coordinates Reverse (-)

12377596 .. 12379488

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTATTTATTTTTTATTAATCACCATGGTGGACAAGGCCCGCTCATCACAGGCCCAGTTCGGTTTCAAACCCCAAACAACAAGACGCGTCGTCTGCAATCGCATTCTCCTCCAGAACACAAAAGAGACCGCCCTCTTTCTTTCCCTCTCTCCCCCCTCCGAAATCTCATTTTTCATCAGAAAAAAGCTTCTGCAAATTCATCCAATTCAACAATGGAGAACCGAGCGGTTCAAGAGATATTGGAGAAGCAATTGCTAACGGTTGCGAAGGCGGTGGAGGACAAGCTCGACGAGGAGATCGCAGCCCTAGATCGAGTTGACGATGACGATCTGGAGGCGCTTAGAGAGCGGAGGCTTCAGCAAATGAAGAAAATGGCGGAGAAGCGCAGCCGTTGGATCTCCCTCGGACATGGCGAGTACTCTGAGATTCCTTCCGAGAAGGACTTCTTCTCTGCCGTCAAGGCCAGCGATCGGGTCGTCTGCCACTTTTACCGCGAAAATTGGCCCTGCAAGGTAGTGGACAAGCACTTGAGTATATTGGCGAAGCAACACATGGAGACACGTTTTGTGAGGATCAATGCTGAGAAAAGTCCCTTCTTAGCGGAGAAGCTCAAGATTGTTGTTCTTCCGACCATTGCTCTTATTAAGAATGCCAAAGTGGATGATTATGTGGTTGGATTCGATGAGCTTGGTGGGAAAGACGACTTCAGCACAGAAGAACTGGAAGAGAGGTTGGCTAAAGCCCAAGTCATTTTTTATGAAGGTGAATCATCTATGAAGTCTAGTGCACAAACCAGGAGTGTCCGGCAAAGCAGCAAGGCCGACTCATCAGATTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

281

Amino Acids

32.03

Weight (kDa)

7.79

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	145 - 226	2.6e-07	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18990 AT3G25580 AT3G25580
fragaria_vesca	FvH4_2g04710 FvH4_2g04710
malus_domestica	MD05G1093600.v1.1
prunus_persica	Prupe.8G138300_v2.0.a1
pyrus_communis	pycom05g09270
rosa_chinensis	RchiOBHm_Chr6g0254311 RchiOBHm_Chr6g0254341 RchiOBHm_Chr6g0254381
rosa_laevigata	RLG00000014131 RLG00000014920 RLG00000014924
rosa_multiflora	Rmu_sc0006565.1_g000001 Rmu_sc0007138.1_g000010 Rmu_sc0015027.1_g000002 Rmu_sc0020698.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210880 Rroxscaffold_7G00210920 Rroxscaffold_7G00210940
rosa_rugosa	Rorug05G0551900
rosa_samantha	Rh6AG068400 Rh6AG068700 Rh6BG061500 Rh6CG060900 Rh6CG061400 Rh6DG058200 Rh6DG058600
rosa_wichuraiana	Rw6G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	43, 227, 349
AccII	CGCG	2 cut(s)	88, 495
AciI	CCGC	8 cut(s)	41, 130, 227, 272, 349, 377, 493, 602
AclWI	GGATC	2 cut(s)	404, 581
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	2 cut(s)	341, 691
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	471
AflIII	ACRYGT	2 cut(s)	86, 560
AgsI	TTSAA	3 cut(s)	68, 210, 233
AhdI	GACNNNNNGTC	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	794
AleI	CACNNNNGTG	1 cut(s)	27
AluBI	AGCT	4 cut(s)	188, 286, 610, 688
AluI	AGCT	4 cut(s)	188, 286, 610, 688
Alw21I	GWGCWC	1 cut(s)	790
Alw26I	GTCTC	2 cut(s)	120, 551
Alw44I	GTGCAC	1 cut(s)	786
AlwI	GGATC	2 cut(s)	404, 581
AoxI	GGCC	5 cut(s)	37, 52, 462, 503, 819
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	3 cut(s)	302, 387, 813
ApoI	RAATTY	1 cut(s)	196
AseI	ATTAAT	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	2 cut(s)	340, 387
AspS9I	GGNCC	3 cut(s)	38, 53, 504
AsuHPI	GGTGA	2 cut(s)	14, 776
BaeGI	GKGCMC	1 cut(s)	790
Bbv12I	GWGCWC	1 cut(s)	790
BbvI	GCAGC	3 cut(s)	314, 399, 825
BceAI	ACGGC	2 cut(s)	375, 440
BciT130I	CCWGG	1 cut(s)	796
BcoDI	GTCTC	2 cut(s)	120, 551
BfaI	CTAG	2 cut(s)	308, 783
BfoI	RGCGCY	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	3 cut(s)	303, 388, 814
BlsI	GCNGC	3 cut(s)	304, 389, 815
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	796
BmeRI	GACNNNNNGTC	1 cut(s)	90
BmgT120I	GGNCC	3 cut(s)	38, 53, 504
BmrFI	CCNGG	1 cut(s)	796
BmrI	ACTGGG	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	2 cut(s)	96, 353
BpuEI	CTTGAG	2 cut(s)	550, 596
BsaBI	GATNNNNATC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	25, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse1I	ACTGG	2 cut(s)	56, 726
Bse3DI	GCAATG	1 cut(s)	633
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	796
BseDI	CCNNGG	2 cut(s)	25, 403
BseGI	GGATG	2 cut(s)	200, 667
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	2 cut(s)	414, 573
BseNI	ACTGG	2 cut(s)	56, 726
BseRI	GAGGAG	2 cut(s)	99, 308
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	3 cut(s)	314, 399, 825
Bsh1236I	CGCG	2 cut(s)	88, 495
Bsh1285I	CGRYCG	1 cut(s)	472
BshFI	GGCC	5 cut(s)	39, 54, 464, 505, 821
BsiEI	CGRYCG	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	790
BsiSI	CCGG	1 cut(s)	805
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	2 cut(s)	120, 551
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	2 cut(s)	103, 655
BsnI	GGCC	5 cut(s)	39, 54, 464, 505, 821
Bso31I	GGTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	790
Bsp143I	GATC	6 cut(s)	297, 310, 328, 396, 469, 573
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	8 cut(s)	41, 130, 227, 272, 349, 377, 493, 602
BspANI	GGCC	5 cut(s)	39, 54, 464, 505, 821
BspCNI	CTCAG	2 cut(s)	415, 574
BspFNI	CGCG	2 cut(s)	88, 495
BspPI	GGATC	2 cut(s)	404, 581
BspTNI	GGTCTC	1 cut(s)	120
BsrBI	CCGCTC	3 cut(s)	43, 227, 349
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	2 cut(s)	56, 726
BssECI	CCNNGG	2 cut(s)	25, 403
BssMI	GATC	6 cut(s)	297, 310, 328, 396, 469, 573
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	796
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	720
BstC8I	GCNNGC	2 cut(s)	41, 466
BstDEI	CTNAG	4 cut(s)	341, 423, 582, 598
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	200, 667
BstFNI	CGCG	2 cut(s)	88, 495
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	2 cut(s)	340, 387
BstKTI	GATC	6 cut(s)	300, 313, 331, 399, 472, 576
BstMAI	GTCTC	2 cut(s)	120, 551
BstMBI	GATC	6 cut(s)	297, 310, 328, 396, 469, 573
BstMCI	CGRYCG	1 cut(s)	472
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 346, 461
BstNI	CCWGG	1 cut(s)	796
BstSCI	CCNGG	1 cut(s)	794
BstSLI	GKGCMC	1 cut(s)	790
BstUI	CGCG	2 cut(s)	88, 495
BstV1I	GCAGC	3 cut(s)	314, 399, 825
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BsuRI	GGCC	5 cut(s)	39, 54, 464, 505, 821
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	200, 667
Cac8I	GCNNGC	2 cut(s)	41, 466
CfoI	GCGC	2 cut(s)	340, 387
Cfr13I	GGNCC	3 cut(s)	38, 53, 504
CseI	GACGC	2 cut(s)	77, 94
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	3 cut(s)	26, 410, 553
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	4 cut(s)	341, 423, 582, 598
DpnI	GATC	6 cut(s)	299, 312, 330, 398, 471, 575
DpnII	GATC	6 cut(s)	297, 310, 328, 396, 469, 573
DriI	GACNNNNNGTC	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	720
Eam1105I	GACNNNNNGTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	720
EciI	GGCGGA	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	120
Eco57I	CTGAAG	2 cut(s)	341, 691
EcoRII	CCWGG	1 cut(s)	794
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	3 cut(s)	29, 413, 556
FaiI	YATR	7 cut(s)	27, 411, 536, 554, 669, 759, 776
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	3 cut(s)	25, 409, 552
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	303, 388, 814
FokI	GGATG	2 cut(s)	187, 674
Fsp4HI	GCNGC	3 cut(s)	303, 388, 814
FspBI	CTAG	2 cut(s)	308, 783
GlaI	GCGC	2 cut(s)	339, 386
GluI	GCNGC	3 cut(s)	303, 388, 814
GsuI	CTGGAG	2 cut(s)	96, 353
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	5 cut(s)	39, 54, 464, 505, 821
HapII	CCGG	1 cut(s)	805
HgaI	GACGC	2 cut(s)	77, 94
HhaI	GCGC	2 cut(s)	340, 387
Hin1II	CATG	3 cut(s)	29, 413, 556
Hin6I	GCGC	2 cut(s)	338, 385
HinP1I	GCGC	2 cut(s)	338, 385
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	5 cut(s)	427, 678, 767, 824, 833
HpaII	CCGG	1 cut(s)	805
HphI	GGTGA	2 cut(s)	14, 776
Hpy166II	GTNNAC	4 cut(s)	32, 319, 520, 788
Hpy188I	TCNGA	8 cut(s)	161, 180, 407, 424, 436, 630, 832, 838
Hpy188III	TCNNGA	4 cut(s)	113, 233, 332, 613
Hpy8I	GTNNAC	4 cut(s)	32, 319, 520, 788
Hpy99I	CGWCG	2 cut(s)	93, 293
HpyAV	CCTTC	5 cut(s)	262, 433, 441, 604, 755
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	562
HpyCH4V	TGCA	4 cut(s)	97, 194, 510, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 346, 461
HpyF3I	CTNAG	4 cut(s)	341, 423, 582, 598
HpySE526I	ACGT	1 cut(s)	562
Hsp92II	CATG	3 cut(s)	29, 413, 556
HspAI	GCGC	2 cut(s)	338, 385
Kzo9I	GATC	6 cut(s)	297, 310, 328, 396, 469, 573
Lsp1109I	GCAGC	3 cut(s)	314, 399, 825
MaeI	CTAG	2 cut(s)	308, 783
MaeII	ACGT	1 cut(s)	562
MalI	GATC	6 cut(s)	299, 312, 330, 398, 471, 575
MbiI	CCGCTC	3 cut(s)	43, 227, 349
MboI	GATC	6 cut(s)	297, 310, 328, 396, 469, 573
MboII	GAAGA	5 cut(s)	379, 439, 617, 728, 737
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	790
MluCI	AATT	4 cut(s)	196, 205, 251, 499
MluI	ACGCGT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	818
MmeI	TCCRAC	3 cut(s)	374, 653, 655
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	2 cut(s)	18, 645
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	1 cut(s)	805
MspR9I	CCNGG	1 cut(s)	796
MunI	CAATTG	1 cut(s)	251
Mva1269I	GAATGC	2 cut(s)	103, 655
MvaI	CCWGG	1 cut(s)	796
MvnI	CGCG	2 cut(s)	88, 495
MwoI	GCNNNNNNNGC	3 cut(s)	94, 346, 461
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	6 cut(s)	297, 310, 328, 396, 469, 573
NlaIII	CATG	3 cut(s)	29, 413, 556
OliI	CACNNNNGTG	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	2 cut(s)	103, 655
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	4 cut(s)	427, 678, 767, 833
PkrI	GCNGC	3 cut(s)	304, 389, 815
Ple19I	CGATCG	1 cut(s)	472
PleI	GAGTC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	818
PshBI	ATTAAT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	794
PspGI	CCWGG	1 cut(s)	794
PspPI	GGNCC	3 cut(s)	38, 53, 504
PsuI	RGATCY	1 cut(s)	396
PvuI	CGATCG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	18, 645
SatI	GCNGC	3 cut(s)	303, 388, 814
Sau3AI	GATC	6 cut(s)	297, 310, 328, 396, 469, 573
Sau96I	GGNCC	3 cut(s)	38, 53, 504
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	818
ScrFI	CCNGG	1 cut(s)	796
SduI	GDGCHC	1 cut(s)	790
SetI	ASST	8 cut(s)	190, 288, 516, 565, 612, 690, 734, 766
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	2 cut(s)	529, 611
SmoI	CTYRAG	2 cut(s)	529, 611
Sse9I	AATT	4 cut(s)	196, 205, 251, 499
SsiI	CCGC	8 cut(s)	41, 130, 227, 272, 349, 377, 493, 602
SspMI	CTAG	2 cut(s)	308, 783
StyD4I	CCNGG	1 cut(s)	794
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	3 cut(s)	288, 313, 681
TasI	AATT	4 cut(s)	196, 205, 251, 499
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	4 cut(s)	427, 678, 767, 833
Tru1I	TTAA	2 cut(s)	18, 645
Tru9I	TTAA	2 cut(s)	18, 645
TseI	GCWGC	3 cut(s)	302, 387, 813
TspDTI	ATGAA	5 cut(s)	164, 189, 380, 774, 791
VneI	GTGCAC	1 cut(s)	786
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	2 cut(s)	308, 783
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.