Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005041

Physical Location & Seq

Genomic Coordinates Forward (+)

5992695 .. 5993318

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG058200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTTTTCTGGGCCTTGGATGGCTAGTGGTTACCTTGAGTATGTACCGTTTATGGTTGTGGACAAGCACTTGAGCATATTGGCAAAGCAACACATAGAGACACGTTTTATGAAGATCAATGCTGAGAAAAGTCCATTCTTAGCGGAGAAGCTCAAGATTGTTGTTCTTCCAACCCTTGCCCTTATTAAGAATGCCAAAGTGGATGATTATGTGGTTGGATTTGATGAGCTGGGTGGGAAAGACGACTTCAGCACAGAAGAACTAGAAGAGAGGTTGGCTAGAGCTCAAGTCATATTTTTTGAAGGTGAAGCATCTTTAAAGTCCAGTGCGAAAACCAGGAGTGTCCGGCAAAGCAGCAAGGATGACTCATCAGATTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

127

Amino Acids

14.28

Weight (kDa)

5.27

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18990 AT3G25580 AT3G25580
fragaria_vesca	FvH4_2g04710 FvH4_2g04710
malus_domestica	MD05G1093600.v1.1
prunus_persica	Prupe.8G138300_v2.0.a1
pyrus_communis	pycom05g09270
rosa_chinensis	RchiOBHm_Chr6g0254311 RchiOBHm_Chr6g0254341 RchiOBHm_Chr6g0254381
rosa_laevigata	RLG00000014131 RLG00000014920 RLG00000014924
rosa_multiflora	Rmu_sc0006565.1_g000001 Rmu_sc0007138.1_g000010 Rmu_sc0015027.1_g000002 Rmu_sc0020698.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210880 Rroxscaffold_7G00210920 Rroxscaffold_7G00210940
rosa_rugosa	Rorug05G0551900
rosa_samantha	Rh6AG068400 Rh6AG068700 Rh6BG061500 Rh6CG060900 Rh6CG061400 Rh6DG058200 Rh6DG058600
rosa_wichuraiana	Rw6G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	232
AfaI	GTAC	1 cut(s)	45
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	3 cut(s)	151, 229, 284
AluI	AGCT	3 cut(s)	151, 229, 284
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	3 cut(s)	24, 263, 279
BisI	GCNGC	1 cut(s)	355
BlsI	GCNGC	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	320
BpuEI	CTTGAG	4 cut(s)	56, 91, 137, 270
BsaJI	CCNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	3 cut(s)	24, 208, 367
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	366
BseYI	CCCAGC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	123, 139
BstEII	GGTNACC	1 cut(s)	29
BstF5I	GGATG	3 cut(s)	24, 208, 367
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	337
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	24, 208, 367
BtsIMutI	CAGTG	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	44
CviJI	RGCY	6 cut(s)	13, 23, 151, 229, 278, 284
CviKI_1	RGCY	6 cut(s)	13, 23, 151, 229, 278, 284
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	2 cut(s)	123, 139
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
DraI	TTTAAA	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	232
Eco91I	GGTNACC	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	14
FaiI	YATR	7 cut(s)	42, 53, 77, 95, 110, 210, 293
Fnu4HI	GCNGC	1 cut(s)	355
FokI	GGATG	3 cut(s)	31, 215, 374
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	355
FspBI	CTAG	3 cut(s)	24, 263, 279
GluI	GCNGC	1 cut(s)	355
GsaI	CCCAGC	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	1 cut(s)	346
HinfI	GANTC	2 cut(s)	365, 374
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	373, 379
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	103
HpyF3I	CTNAG	2 cut(s)	123, 139
HpySE526I	ACGT	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	5 cut(s)	215, 322, 337, 349, 359
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	3 cut(s)	24, 263, 279
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	4 cut(s)	124, 158, 269, 278
MhlI	GDGCHC	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	194, 196
MnlI	CCTC	1 cut(s)	264
MseI	TTAA	2 cut(s)	186, 317
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	337
NdeII	GATC	1 cut(s)	114
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	356
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	335
PspEI	GGTNACC	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	335
PspPI	GGNCC	1 cut(s)	11
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	186, 317
SatI	GCNGC	1 cut(s)	355
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	7 cut(s)	36, 106, 153, 231, 275, 286, 307
SfaNI	GCATC	1 cut(s)	320
SmlI	CTYRAG	4 cut(s)	35, 70, 152, 285
SmoI	CTYRAG	4 cut(s)	35, 70, 152, 285
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	3 cut(s)	24, 263, 279
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	2 cut(s)	186, 317
Tru9I	TTAA	2 cut(s)	186, 317
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	1 cut(s)	354
TspDTI	ATGAA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	331
XspI	CTAG	3 cut(s)	24, 263, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.