Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005041

Physical Location & Seq

Genomic Coordinates Reverse (-)

15770781 .. 15772873

Gene Structure 2093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G138300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAAAAAAAGGGTAGGGAATACAAATTGACTCAAAGGCCCAAGTTCAATTTCAGACCCAAAGCACCAAAACGCGACGTTTTGATATTAGCATCCTCCAATACGGTCCAGAACAAAAGGAAAAATAGGCCCGCCCTCTTTTCCCCCTCTCTCCCTCTGAAATCCCATTTTTCATCTGAACGAAAGCTTCTGCAAAATCTATTCAATTCAACAATGGAGAACCGAGCGGTCCAAGAGATATTGGAGAAGCAATTGCTGACAGTAGCGAAGGCGGTGGAGGACAAGCTTGATGAGGAAATCTCAGCCCTAGATCGAGTGGATGATGACGATCTGGAGGCGCTCAGAGAGCGGAGGCTTCAGCAGATGAAGAAGATGGCGGAAAAGCGCAGCCGTTGGATCTCCCTCGGCCATGGCGAGTACACCGAGATCCCCGCCGAGAAGGACTTCTTCTCCGCCGTCAAGGCCAGTGACCGCGTCGTCTGCCACTTTTACCGCGAAAATTGGCCCTGCAAGGTGGTGGACAAGCACTTGAGTATATTGGCGAAGCAACACATGGAGACACGTTTTGTGAAGATCAATGCTGAGAAAAGTCCATTCTTAGCAGAGAAGCTGAAGATCGTTGTTCTTCCAACCATTGCCCTTATTAAGAATGCCAAAGTGGATGATTATGTGGTCGGATTCGATGAGCTTGGGGGGAAAGACGACTTCAGCACAGAAGAACTGGAGGAGAGGTTGGCTAAAGCCCAAGTCATCTTCTTTGAGGGTGAATCATCTCTAAAGTCTAGTGCAAAAACCAGGAGTGTCCGGCAAAGCAGCAATGCGGACTCATCGGATTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

281

Amino Acids

32.18

Weight (kDa)

9.27

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18990 AT3G25580 AT3G25580
fragaria_vesca	FvH4_2g04710 FvH4_2g04710
malus_domestica	MD05G1093600.v1.1
prunus_persica	Prupe.8G138300_v2.0.a1
pyrus_communis	pycom05g09270
rosa_chinensis	RchiOBHm_Chr6g0254311 RchiOBHm_Chr6g0254341 RchiOBHm_Chr6g0254381
rosa_laevigata	RLG00000014131 RLG00000014920 RLG00000014924
rosa_multiflora	Rmu_sc0006565.1_g000001 Rmu_sc0007138.1_g000010 Rmu_sc0015027.1_g000002 Rmu_sc0020698.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210880 Rroxscaffold_7G00210920 Rroxscaffold_7G00210940
rosa_rugosa	Rorug05G0551900
rosa_samantha	Rh6AG068400 Rh6AG068700 Rh6BG061500 Rh6CG060900 Rh6CG061400 Rh6DG058200 Rh6DG058600
rosa_wichuraiana	Rw6G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	476
AccBSI	CCGCTC	2 cut(s)	227, 349
AccII	CGCG	3 cut(s)	75, 474, 495
AclWI	GGATC	2 cut(s)	404, 421
AcoI	YGGCCR	1 cut(s)	406
AcuI	CTGAAG	3 cut(s)	341, 632, 691
AfaI	GTAC	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	560
AgsI	TTSAA	3 cut(s)	49, 205, 210
AjnI	CCWGG	1 cut(s)	794
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	4 cut(s)	187, 286, 610, 688
AluI	AGCT	4 cut(s)	187, 286, 610, 688
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	2 cut(s)	404, 421
AoxI	GGCC	5 cut(s)	38, 128, 406, 462, 503
ApeKI	GCWGC	2 cut(s)	387, 813
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	2 cut(s)	340, 387
AspS9I	GGNCC	5 cut(s)	39, 106, 129, 229, 504
AsuHPI	GGTGA	1 cut(s)	776
AvaII	GGWCC	2 cut(s)	106, 229
BbvI	GCAGC	2 cut(s)	399, 825
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	375, 440
BciT130I	CCWGG	1 cut(s)	796
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	2 cut(s)	308, 783
BfoI	RGCGCY	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	2 cut(s)	388, 814
BlsI	GCNGC	2 cut(s)	389, 815
Bme1390I	CCNGG	1 cut(s)	796
Bme18I	GGWCC	2 cut(s)	106, 229
BmgT120I	GGNCC	5 cut(s)	39, 106, 129, 229, 504
BmrFI	CCNGG	1 cut(s)	796
BmsI	GCATC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	2 cut(s)	353, 743
BpuEI	CTTGAG	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	403, 409
BsaXI	ACNNNNNCTCC	4 cut(s)	434, 464, 716, 746
Bse1I	ACTGG	2 cut(s)	465, 726
Bse3DI	GCAATG	2 cut(s)	633, 823
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	796
BseDI	CCNNGG	2 cut(s)	403, 409
BseGI	GGATG	3 cut(s)	92, 325, 667
BseJI	GATNNNNATC	1 cut(s)	327
BseMI	GCAATG	2 cut(s)	633, 823
BseMII	CTCAG	3 cut(s)	315, 355, 573
BseNI	ACTGG	2 cut(s)	465, 726
BseRI	GAGGAG	1 cut(s)	740
BseXI	GCAGC	2 cut(s)	399, 825
Bsh1236I	CGCG	3 cut(s)	75, 474, 495
BshFI	GGCC	5 cut(s)	40, 130, 408, 464, 505
BsiSI	CCGG	1 cut(s)	805
BsmAI	GTCTC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	5 cut(s)	40, 130, 408, 464, 505
Bsp143I	GATC	6 cut(s)	310, 328, 396, 426, 573, 615
Bsp19I	CCATGG	1 cut(s)	409
BspANI	GGCC	5 cut(s)	40, 130, 408, 464, 505
BspCNI	CTCAG	3 cut(s)	314, 354, 574
BspFNI	CGCG	3 cut(s)	75, 474, 495
BspPI	GGATC	2 cut(s)	404, 421
BsrBI	CCGCTC	2 cut(s)	227, 349
BsrDI	GCAATG	2 cut(s)	633, 823
BsrI	ACTGG	2 cut(s)	465, 726
BssECI	CCNNGG	2 cut(s)	403, 409
BssMI	GATC	6 cut(s)	310, 328, 396, 426, 573, 615
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	796
Bst4CI	ACNGT	2 cut(s)	106, 262
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	4 cut(s)	301, 341, 582, 598
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	3 cut(s)	92, 325, 667
BstFNI	CGCG	3 cut(s)	75, 474, 495
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	2 cut(s)	340, 387
BstKTI	GATC	6 cut(s)	313, 331, 399, 429, 576, 618
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	6 cut(s)	310, 328, 396, 426, 573, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 461, 480
BstNI	CCWGG	1 cut(s)	796
BstSCI	CCNGG	1 cut(s)	794
BstUI	CGCG	3 cut(s)	75, 474, 495
BstV1I	GCAGC	2 cut(s)	399, 825
BstX2I	RGATCY	2 cut(s)	396, 426
BstYI	RGATCY	2 cut(s)	396, 426
BsuRI	GGCC	5 cut(s)	40, 130, 408, 464, 505
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	3 cut(s)	92, 325, 667
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	2 cut(s)	340, 387
Cfr13I	GGNCC	5 cut(s)	39, 106, 129, 229, 504
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	2 cut(s)	410, 553
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	4 cut(s)	301, 341, 582, 598
DpnI	GATC	6 cut(s)	312, 330, 398, 428, 575, 617
DpnII	GATC	6 cut(s)	310, 328, 396, 426, 573, 615
DrdI	GACNNNNNNGTC	1 cut(s)	476
DseDI	GACNNNNNNGTC	1 cut(s)	476
EaeI	YGGCCR	1 cut(s)	406
EciI	GGCGGA	2 cut(s)	392, 442
Eco130I	CCWWGG	1 cut(s)	409
Eco47I	GGWCC	2 cut(s)	106, 229
Eco57I	CTGAAG	3 cut(s)	341, 632, 691
EcoRII	CCWGG	1 cut(s)	794
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	2 cut(s)	413, 556
FaiI	YATR	4 cut(s)	411, 536, 554, 669
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	2 cut(s)	409, 552
FauI	CCCGC	2 cut(s)	139, 439
Fnu4HI	GCNGC	2 cut(s)	388, 814
FokI	GGATG	3 cut(s)	79, 332, 674
Fsp4HI	GCNGC	2 cut(s)	388, 814
FspBI	CTAG	2 cut(s)	308, 783
GlaI	GCGC	2 cut(s)	339, 386
GluI	GCNGC	2 cut(s)	388, 814
GsuI	CTGGAG	2 cut(s)	353, 743
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	5 cut(s)	40, 130, 408, 464, 505
HapII	CCGG	1 cut(s)	805
HgaI	GACGC	1 cut(s)	463
HhaI	GCGC	2 cut(s)	340, 387
Hin1II	CATG	2 cut(s)	413, 556
Hin6I	GCGC	2 cut(s)	338, 385
HinP1I	GCGC	2 cut(s)	338, 385
HindIII	AAGCTT	2 cut(s)	185, 284
HinfI	GANTC	5 cut(s)	31, 678, 767, 824, 833
HpaII	CCGG	1 cut(s)	805
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	2 cut(s)	420, 520
Hpy188I	TCNGA	7 cut(s)	56, 159, 178, 344, 677, 832, 838
Hpy188III	TCNNGA	2 cut(s)	109, 332
Hpy8I	GTNNAC	2 cut(s)	420, 520
Hpy99I	CGWCG	2 cut(s)	80, 479
HpyAV	CCTTC	2 cut(s)	262, 433
HpyCH4III	ACNGT	2 cut(s)	106, 262
HpyCH4IV	ACGT	2 cut(s)	78, 562
HpyCH4V	TGCA	3 cut(s)	193, 510, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 461, 480
HpyF3I	CTNAG	4 cut(s)	301, 341, 582, 598
HpySE526I	ACGT	2 cut(s)	78, 562
Hsp92II	CATG	2 cut(s)	413, 556
HspAI	GCGC	2 cut(s)	338, 385
Kzo9I	GATC	6 cut(s)	310, 328, 396, 426, 573, 615
LpnPI	CCDG	8 cut(s)	122, 317, 478, 520, 707, 781, 808, 818
Lsp1109I	GCAGC	2 cut(s)	399, 825
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	308, 783
MaeII	ACGT	2 cut(s)	78, 562
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	6 cut(s)	312, 330, 398, 428, 575, 617
MbiI	CCGCTC	2 cut(s)	227, 349
MboI	GATC	6 cut(s)	310, 328, 396, 426, 573, 615
MboII	GAAGA	8 cut(s)	379, 382, 439, 583, 617, 625, 728, 745
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	2 cut(s)	396, 426
MluCI	AATT	5 cut(s)	26, 49, 205, 251, 499
MlyI	GAGTC	2 cut(s)	25, 818
MmeI	TCCRAC	3 cut(s)	374, 653, 655
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	1 cut(s)	645
MspI	CCGG	1 cut(s)	805
MspR9I	CCNGG	1 cut(s)	796
MunI	CAATTG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	796
MvnI	CGCG	3 cut(s)	75, 474, 495
MwoI	GCNNNNNNNGC	3 cut(s)	346, 461, 480
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	6 cut(s)	310, 328, 396, 426, 573, 615
NlaIII	CATG	2 cut(s)	413, 556
NmeAIII	GCCGAG	2 cut(s)	384, 460
NmuCI	GTSAC	1 cut(s)	467
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	3 cut(s)	678, 767, 833
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	389, 815
PleI	GAGTC	2 cut(s)	25, 818
PpsI	GAGTC	2 cut(s)	25, 818
Psp6I	CCWGG	1 cut(s)	794
PspGI	CCWGG	1 cut(s)	794
PspPI	GGNCC	5 cut(s)	39, 106, 129, 229, 504
PsuI	RGATCY	2 cut(s)	396, 426
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	2 cut(s)	388, 814
Sau3AI	GATC	6 cut(s)	310, 328, 396, 426, 573, 615
Sau96I	GGNCC	5 cut(s)	39, 106, 129, 229, 504
SchI	GAGTC	2 cut(s)	25, 818
ScrFI	CCNGG	1 cut(s)	796
SetI	ASST	8 cut(s)	81, 189, 288, 516, 565, 612, 690, 734
SfaNI	GCATC	1 cut(s)	101
SinI	GGWCC	2 cut(s)	106, 229
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	5 cut(s)	26, 49, 205, 251, 499
SspMI	CTAG	2 cut(s)	308, 783
StyD4I	CCNGG	1 cut(s)	794
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	106, 262
TaiI	ACGT	2 cut(s)	81, 565
TaqI	TCGA	2 cut(s)	313, 681
TasI	AATT	5 cut(s)	26, 49, 205, 251, 499
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	3 cut(s)	678, 767, 833
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	2 cut(s)	387, 813
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	3 cut(s)	17, 162, 380
TspRI	CASTG	1 cut(s)	472
Tth111I	GACNNNGTC	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	106, 229
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	2 cut(s)	308, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.