Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005041

Physical Location & Seq

Genomic Coordinates Reverse (-)

61313583 .. 61315486

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGAACCGAGCCGTCCAAGAGATAATCGAGCAGCAAGTGCTGACGGTGGCGAAGGCGGTGGAGGACAAGCTCGACGAGGAGATCGCAGCCCTAGATCGGGTCGACGACGACGATCTGGAGGTGCTCAGAGAGCGGAGGCTCCAGCAGATGAAGAAGATGGCGGAGAAGCGCAGCCGTTGGATCTCCCTTGGCCACGGCGAGTACACCGAGATCCCTTCCGAGAAGGACTTCTTCTCCGCCGTCAAGGCCAGTGACCGCGTCGTCTGCCACTTTTACCGCGAAAATTGGCCCTGCAAGAATTGTGGAGTTCTAAACACTCTGGTCCAGCTGTTGGAATGGAAGTGTTCAGTTGTGGACAAGCACTTGAGCATATTGGCAAAGCAACACATAGAGACACGTTTTATGAAGATCAATGCTGAGAAAAGTCCATTCTTAGCGGAGAAGCTCAAGATTGTTGTTCTTCCAACCCTTGCCCTTATTAAGAATGCCAAAGTGGATGATTATGTGGTTGGATTTGATGAGCTGGGTGGGAAAGACGACTTCAGCACAGAAGAACTAGAGGAGAGGTTGGCTAGAGCTCAAGTCATATTTTTTGAAGGTGAAGCATCTTTAAAGTCCAGTGCGAAAACCAGGAGTGTCCGGCAAAGCAGCAAGGATGACGCATCAGATTCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

226

Amino Acids

25.81

Weight (kDa)

5.35

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18990 AT3G25580 AT3G25580
fragaria_vesca	FvH4_2g04710 FvH4_2g04710
malus_domestica	MD05G1093600.v1.1
prunus_persica	Prupe.8G138300_v2.0.a1
pyrus_communis	pycom05g09270
rosa_chinensis	RchiOBHm_Chr6g0254311 RchiOBHm_Chr6g0254341 RchiOBHm_Chr6g0254381
rosa_laevigata	RLG00000014131 RLG00000014920 RLG00000014924
rosa_multiflora	Rmu_sc0006565.1_g000001 Rmu_sc0007138.1_g000010 Rmu_sc0015027.1_g000002 Rmu_sc0020698.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210880 Rroxscaffold_7G00210920 Rroxscaffold_7G00210940
rosa_rugosa	Rorug05G0551900
rosa_samantha	Rh6AG068400 Rh6AG068700 Rh6BG061500 Rh6CG060900 Rh6CG061400 Rh6DG058200 Rh6DG058600
rosa_wichuraiana	Rw6G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccBSI	CCGCTC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	2 cut(s)	261, 282
AciI	CCGC	7 cut(s)	59, 136, 164, 240, 259, 280, 440
AclWI	GGATC	2 cut(s)	191, 208
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	529
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	99, 100, 334
AflIII	ACRYGT	1 cut(s)	398
AgsI	TTSAA	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	632
AluBI	AGCT	5 cut(s)	73, 331, 448, 526, 581
AluI	AGCT	5 cut(s)	73, 331, 448, 526, 581
Alw21I	GWGCWC	2 cut(s)	129, 583
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	2 cut(s)	191, 208
AoxI	GGCC	3 cut(s)	193, 249, 290
ApeKI	GCWGC	4 cut(s)	34, 89, 174, 651
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	2 cut(s)	291, 325
AsuHPI	GGTGA	1 cut(s)	614
AvaII	GGWCC	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	583
Bbv12I	GWGCWC	2 cut(s)	129, 583
BbvI	GCAGC	4 cut(s)	46, 101, 186, 663
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	3 cut(s)	162, 214, 227
BciT130I	CCWGG	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	3 cut(s)	95, 560, 576
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	4 cut(s)	35, 90, 175, 652
BlsI	GCNGC	4 cut(s)	36, 91, 176, 653
Bme1390I	CCNGG	1 cut(s)	634
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	291, 325
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	634
BmsI	GCATC	2 cut(s)	617, 674
BpmI	CTGGAG	2 cut(s)	128, 140
BpuEI	CTTGAG	3 cut(s)	388, 434, 567
BsaJI	CCNNGG	2 cut(s)	190, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 100, 334
Bse1I	ACTGG	2 cut(s)	252, 621
BseBI	CCWGG	1 cut(s)	634
BseDI	CCNNGG	2 cut(s)	190, 196
BseGI	GGATG	2 cut(s)	505, 664
BseLI	CCNNNNNNNGG	3 cut(s)	99, 100, 334
BseMII	CTCAG	2 cut(s)	142, 411
BseNI	ACTGG	2 cut(s)	252, 621
BseRI	GAGGAG	2 cut(s)	95, 578
BseXI	GCAGC	4 cut(s)	46, 101, 186, 663
BseYI	CCCAGC	1 cut(s)	526
Bsh1236I	CGCG	2 cut(s)	261, 282
BshFI	GGCC	3 cut(s)	195, 251, 292
BsiHKAI	GWGCWC	2 cut(s)	129, 583
BsiSI	CCGG	1 cut(s)	643
BslI	CCNNNNNNNGG	3 cut(s)	99, 100, 334
BsmAI	GTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	195, 251, 292
Bsp1286I	GDGCHC	2 cut(s)	129, 583
Bsp143I	GATC	6 cut(s)	84, 97, 115, 183, 213, 411
BspACI	CCGC	7 cut(s)	59, 136, 164, 240, 259, 280, 440
BspANI	GGCC	3 cut(s)	195, 251, 292
BspCNI	CTCAG	2 cut(s)	141, 412
BspFNI	CGCG	2 cut(s)	261, 282
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	191, 208
BsrBI	CCGCTC	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	252, 621
BssECI	CCNNGG	2 cut(s)	190, 196
BssMI	GATC	6 cut(s)	84, 97, 115, 183, 213, 411
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	128, 420, 436
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	505, 664
BstFNI	CGCG	2 cut(s)	261, 282
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	6 cut(s)	87, 100, 118, 186, 216, 414
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	6 cut(s)	84, 97, 115, 183, 213, 411
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 40, 133, 248, 267
BstNI	CCWGG	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	632
BstUI	CGCG	2 cut(s)	261, 282
BstV1I	GCAGC	4 cut(s)	46, 101, 186, 663
BstX2I	RGATCY	2 cut(s)	183, 213
BstYI	RGATCY	2 cut(s)	183, 213
BsuRI	GGCC	3 cut(s)	195, 251, 292
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	505, 664
BtsIMutI	CAGTG	2 cut(s)	259, 628
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	291, 325
CseI	GACGC	2 cut(s)	250, 671
Csp6I	GTAC	1 cut(s)	205
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	3 cut(s)	128, 420, 436
DpnI	GATC	6 cut(s)	86, 99, 117, 185, 215, 413
DpnII	GATC	6 cut(s)	84, 97, 115, 183, 213, 411
DraI	TTTAAA	1 cut(s)	615
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	193
EciI	GGCGGA	2 cut(s)	179, 229
Ecl136II	GAGCTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	632
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	190
FaiI	YATR	5 cut(s)	374, 392, 407, 507, 590
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	35, 90, 175, 652
FokI	GGATG	2 cut(s)	512, 671
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	4 cut(s)	35, 90, 175, 652
FspBI	CTAG	3 cut(s)	95, 560, 576
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	4 cut(s)	35, 90, 175, 652
GsaI	CCCAGC	1 cut(s)	530
GsuI	CTGGAG	2 cut(s)	128, 140
HaeIII	GGCC	3 cut(s)	195, 251, 292
HapII	CCGG	1 cut(s)	643
HgaI	GACGC	2 cut(s)	250, 671
HhaI	GCGC	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	671
HpaII	CCGG	1 cut(s)	643
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	3 cut(s)	106, 207, 358
Hpy188I	TCNGA	4 cut(s)	131, 223, 670, 676
Hpy188III	TCNNGA	2 cut(s)	119, 451
Hpy8I	GTNNAC	3 cut(s)	106, 207, 358
Hpy99I	CGWCG	5 cut(s)	80, 110, 113, 116, 266
HpyAV	CCTTC	4 cut(s)	49, 220, 228, 593
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 40, 133, 248, 267
HpyF3I	CTNAG	3 cut(s)	128, 420, 436
HpySE526I	ACGT	1 cut(s)	400
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	84, 97, 115, 183, 213, 411
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	4 cut(s)	46, 101, 186, 663
LweI	GCATC	2 cut(s)	617, 674
MaeI	CTAG	3 cut(s)	95, 560, 576
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	6 cut(s)	86, 99, 117, 185, 215, 413
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	6 cut(s)	84, 97, 115, 183, 213, 411
MboII	GAAGA	6 cut(s)	166, 169, 226, 421, 455, 566
MflI	RGATCY	2 cut(s)	183, 213
MhlI	GDGCHC	2 cut(s)	129, 583
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	2 cut(s)	286, 301
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	4 cut(s)	161, 315, 491, 493
MnlI	CCTC	6 cut(s)	58, 73, 115, 132, 556, 561
Mox20I	TGGCCA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	483, 614
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	1 cut(s)	643
MspR9I	CCNGG	1 cut(s)	634
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	634
MvnI	CGCG	2 cut(s)	261, 282
MwoI	GCNNNNNNNGC	5 cut(s)	11, 40, 133, 248, 267
NdeII	GATC	6 cut(s)	84, 97, 115, 183, 213, 411
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	671
PflFI	GACNNNGTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	4 cut(s)	36, 91, 176, 653
Psp124BI	GAGCTC	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	632
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	2 cut(s)	291, 325
PsuI	RGATCY	2 cut(s)	183, 213
PsyI	GACNNNGTC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	583
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	483, 614
SatI	GCNGC	4 cut(s)	35, 90, 175, 652
Sau3AI	GATC	6 cut(s)	84, 97, 115, 183, 213, 411
Sau96I	GGNCC	2 cut(s)	291, 325
ScrFI	CCNGG	1 cut(s)	634
SduI	GDGCHC	2 cut(s)	129, 583
SetI	ASST	9 cut(s)	75, 126, 333, 403, 450, 528, 572, 583, 604
SfaNI	GCATC	2 cut(s)	617, 674
SinI	GGWCC	1 cut(s)	325
SmlI	CTYRAG	3 cut(s)	367, 449, 582
SmoI	CTYRAG	3 cut(s)	367, 449, 582
Sse9I	AATT	2 cut(s)	286, 301
SsiI	CCGC	7 cut(s)	59, 136, 164, 240, 259, 280, 440
SspMI	CTAG	3 cut(s)	95, 560, 576
SstI	GAGCTC	1 cut(s)	583
StyD4I	CCNGG	1 cut(s)	632
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	3 cut(s)	30, 75, 105
TasI	AATT	2 cut(s)	286, 301
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	2 cut(s)	483, 614
Tru9I	TTAA	2 cut(s)	483, 614
TscAI	CASTG	2 cut(s)	259, 628
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	34, 89, 174, 651
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	167, 422
TspRI	CASTG	2 cut(s)	259, 628
Tth111I	GACNNNGTC	1 cut(s)	260
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	3 cut(s)	95, 560, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.