Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005041

Physical Location & Seq

Genomic Coordinates Forward (+)

6018692 .. 6019490

Gene Structure 799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG058600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCATTGACAGTTTTCATGGGTCATCTTTGGAAGTGGGTTCTGTTTAGGGTTGTGGACAAGCACTTGAGCATATTGGCAAAGCAACACATAGAGACACGTTTTATGAAGATCAATCCTGAGAAAAGTCCATTCTTAGCGGAGAAGCTGAAGATTGTTGTTCTTCCAACCCTTGCCCTTATTAAGAATGCCAAAGTGGATGATTATGTGGTTGGATTTGATGAGCTGGGTGGGAAAGATGACTTCAGCACAGAAGAACTAGAGGAGAGGTTGGCTAGAGCTCAAGTCATATTTTTTGAAGGTGAAGCATCTTTAAAGTCCAGTGTGAAAACCAGGAGTGTCCGGCAAAGCAGCAAGGATGACTCATCAGATTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

126

Amino Acids

14.36

Weight (kDa)

6.31

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18990 AT3G25580 AT3G25580
fragaria_vesca	FvH4_2g04710 FvH4_2g04710
malus_domestica	MD05G1093600.v1.1
prunus_persica	Prupe.8G138300_v2.0.a1
pyrus_communis	pycom05g09270
rosa_chinensis	RchiOBHm_Chr6g0254311 RchiOBHm_Chr6g0254341 RchiOBHm_Chr6g0254381
rosa_laevigata	RLG00000014131 RLG00000014920 RLG00000014924
rosa_multiflora	Rmu_sc0006565.1_g000001 Rmu_sc0007138.1_g000010 Rmu_sc0015027.1_g000002 Rmu_sc0020698.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210880 Rroxscaffold_7G00210920 Rroxscaffold_7G00210940
rosa_rugosa	Rorug05G0551900
rosa_samantha	Rh6AG068400 Rh6AG068700 Rh6BG061500 Rh6CG060900 Rh6CG061400 Rh6DG058200 Rh6DG058600
rosa_wichuraiana	Rw6G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	170, 229
AflIII	ACRYGT	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	3 cut(s)	148, 226, 281
AluI	AGCT	3 cut(s)	148, 226, 281
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	260, 276
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	88, 267
Bse1I	ACTGG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	205, 364
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	363
BseYI	CCCAGC	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	321
BssMI	GATC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	120, 136
BstF5I	GGATG	2 cut(s)	205, 364
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	205, 364
BtsIMutI	CAGTG	1 cut(s)	328
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	4 cut(s)	148, 226, 275, 281
CviKI_1	RGCY	4 cut(s)	148, 226, 275, 281
DdeI	CTNAG	2 cut(s)	120, 136
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
DraI	TTTAAA	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	2 cut(s)	170, 229
EcoICRI	GAGCTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	283
FaeI	CATG	1 cut(s)	22
FaiI	YATR	6 cut(s)	20, 74, 92, 107, 207, 290
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	352
FokI	GGATG	2 cut(s)	212, 371
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	352
FspBI	CTAG	2 cut(s)	260, 276
GluI	GCNGC	1 cut(s)	352
GsaI	CCCAGC	1 cut(s)	230
HapII	CCGG	1 cut(s)	343
Hin1II	CATG	1 cut(s)	22
HinfI	GANTC	2 cut(s)	362, 371
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	370, 376
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	120, 136
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	111
LpnPI	CCDG	6 cut(s)	132, 212, 319, 334, 346, 356
Lsp1109I	GCAGC	1 cut(s)	363
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	2 cut(s)	260, 276
MaeII	ACGT	1 cut(s)	100
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	4 cut(s)	121, 155, 163, 266
MhlI	GDGCHC	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	2 cut(s)	191, 193
MnlI	CCTC	2 cut(s)	256, 261
MseI	TTAA	2 cut(s)	183, 314
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	334
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	1 cut(s)	22
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	353
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	183, 314
SatI	GCNGC	1 cut(s)	352
Sau3AI	GATC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	6 cut(s)	103, 150, 228, 272, 283, 304
SfaNI	GCATC	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	67, 282
SmoI	CTYRAG	2 cut(s)	67, 282
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	2 cut(s)	260, 276
SstI	GAGCTC	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	183, 314
Tru9I	TTAA	2 cut(s)	183, 314
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	1 cut(s)	351
TspDTI	ATGAA	2 cut(s)	7, 122
TspRI	CASTG	1 cut(s)	328
XspI	CTAG	2 cut(s)	260, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.