Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005041

Physical Location & Seq

Genomic Coordinates Reverse (-)

59478183 .. 59479806

Gene Structure 1624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGAACCGAGCCGTTCAAGAGATAATCGAGCAGCAAGTGCTGACGGTGGCGAAGGCGGTGGAGGACAAGCTCGACGAGGAGATCGCTGCCCTAGATCGGGTCGACGACGACGATCTGGAGGTGCTCAGAGAGCGGAGGCTCCAGCAGATGAAGAAGATGGCTGAGAAGCGCAGCCGTTGGATCTCCCTTGGCCACGGCGAGTACACCGAGATCCCTTCCGAGAAGGACTTCTTCTCCGCCGTCAAGGCCAGTGACCGCGTCGTCTGCCACTTCTACCGCGAAAATTGGCCCTGCAAGGTTGTGGACAAGCACTTGAGCATATTGGCAAAGCAACACATAGAGACACGTTTTATGAAGATCAATGCTGAGAAAAGTCCATTCTTAGCGGAGAAGCTCAAGATTGTTGTTCTTCCAACCCTTGCCCTTATTAAGAATGCCAAAGTGGATGATTATGTGGTTGGATTTGATGAGCTGGGTGGGAAAGACGACTTCAGCACAGAAGAACTAGAGGAGAGGTTGGCTAGAGCTCAAGTCATATTTTTTGAGGGTGAAGCATCTTTAAAGTCCAGTGCGAAAACCAGGAGTGTCCGGCAAAGCAGCAAGGATGACTCGTCAGATTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

210

Amino Acids

23.92

Weight (kDa)

5.33

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosducin	PF02114	34 - 176	6.7e-06	Phosducin
Thioredoxin	PF00085	74 - 155	5.9e-08	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18990 AT3G25580 AT3G25580
fragaria_vesca	FvH4_2g04710 FvH4_2g04710
malus_domestica	MD05G1093600.v1.1
prunus_persica	Prupe.8G138300_v2.0.a1
pyrus_communis	pycom05g09270
rosa_chinensis	RchiOBHm_Chr6g0254311 RchiOBHm_Chr6g0254341 RchiOBHm_Chr6g0254381
rosa_laevigata	RLG00000014131 RLG00000014920 RLG00000014924
rosa_multiflora	Rmu_sc0006565.1_g000001 Rmu_sc0007138.1_g000010 Rmu_sc0015027.1_g000002 Rmu_sc0020698.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210880 Rroxscaffold_7G00210920 Rroxscaffold_7G00210940
rosa_rugosa	Rorug05G0551900
rosa_samantha	Rh6AG068400 Rh6AG068700 Rh6BG061500 Rh6CG060900 Rh6CG061400 Rh6DG058200 Rh6DG058600
rosa_wichuraiana	Rw6G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	2 cut(s)	261, 282
AciI	CCGC	6 cut(s)	59, 136, 240, 259, 280, 389
AclWI	GGATC	2 cut(s)	191, 208
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	478
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	99, 100
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	581
AluBI	AGCT	4 cut(s)	73, 397, 475, 530
AluI	AGCT	4 cut(s)	73, 397, 475, 530
Alw21I	GWGCWC	2 cut(s)	129, 532
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	191, 208
AoxI	GGCC	3 cut(s)	193, 249, 290
ApeKI	GCWGC	4 cut(s)	34, 89, 174, 600
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	129, 532
BbvI	GCAGC	4 cut(s)	46, 76, 186, 612
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	3 cut(s)	162, 214, 227
BciT130I	CCWGG	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	3 cut(s)	95, 509, 525
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	4 cut(s)	35, 90, 175, 601
BlsI	GCNGC	4 cut(s)	36, 91, 176, 602
Bme1390I	CCNGG	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	583
BmsI	GCATC	1 cut(s)	566
BpmI	CTGGAG	2 cut(s)	128, 140
BpuEI	CTTGAG	3 cut(s)	337, 383, 516
BsaJI	CCNNGG	2 cut(s)	190, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 100
Bse1I	ACTGG	2 cut(s)	252, 570
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	2 cut(s)	190, 196
BseGI	GGATG	2 cut(s)	454, 613
BseLI	CCNNNNNNNGG	2 cut(s)	99, 100
BseMII	CTCAG	3 cut(s)	142, 156, 360
BseNI	ACTGG	2 cut(s)	252, 570
BseRI	GAGGAG	2 cut(s)	95, 527
BseXI	GCAGC	4 cut(s)	46, 76, 186, 612
BseYI	CCCAGC	1 cut(s)	475
Bsh1236I	CGCG	2 cut(s)	261, 282
BshFI	GGCC	3 cut(s)	195, 251, 292
BsiHKAI	GWGCWC	2 cut(s)	129, 532
BsiSI	CCGG	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	99, 100
BsmAI	GTCTC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	3 cut(s)	195, 251, 292
Bsp1286I	GDGCHC	2 cut(s)	129, 532
Bsp143I	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
BspACI	CCGC	6 cut(s)	59, 136, 240, 259, 280, 389
BspANI	GGCC	3 cut(s)	195, 251, 292
BspCNI	CTCAG	3 cut(s)	141, 157, 361
BspFNI	CGCG	2 cut(s)	261, 282
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	191, 208
BsrBI	CCGCTC	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	252, 570
BssECI	CCNNGG	2 cut(s)	190, 196
BssMI	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstDEI	CTNAG	4 cut(s)	128, 165, 369, 385
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	454, 613
BstFNI	CGCG	2 cut(s)	261, 282
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	6 cut(s)	87, 100, 118, 186, 216, 363
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 40, 133, 248, 267
BstNI	CCWGG	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	581
BstUI	CGCG	2 cut(s)	261, 282
BstV1I	GCAGC	4 cut(s)	46, 76, 186, 612
BstX2I	RGATCY	2 cut(s)	183, 213
BstYI	RGATCY	2 cut(s)	183, 213
BsuRI	GGCC	3 cut(s)	195, 251, 292
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	454, 613
BtsIMutI	CAGTG	2 cut(s)	259, 577
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	291
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	205
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	4 cut(s)	128, 165, 369, 385
DpnI	GATC	6 cut(s)	86, 99, 117, 185, 215, 362
DpnII	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
DraI	TTTAAA	1 cut(s)	564
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	193
EciI	GGCGGA	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	532
Eco53kI	GAGCTC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	190
FaiI	YATR	5 cut(s)	323, 341, 356, 456, 539
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	35, 90, 175, 601
FokI	GGATG	2 cut(s)	461, 620
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	4 cut(s)	35, 90, 175, 601
FspBI	CTAG	3 cut(s)	95, 509, 525
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	4 cut(s)	35, 90, 175, 601
GsaI	CCCAGC	1 cut(s)	479
GsuI	CTGGAG	2 cut(s)	128, 140
HaeIII	GGCC	3 cut(s)	195, 251, 292
HapII	CCGG	1 cut(s)	592
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	611, 620
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	3 cut(s)	106, 207, 307
Hpy188I	TCNGA	4 cut(s)	131, 223, 619, 625
Hpy188III	TCNNGA	3 cut(s)	20, 119, 400
Hpy8I	GTNNAC	3 cut(s)	106, 207, 307
Hpy99I	CGWCG	5 cut(s)	80, 110, 113, 116, 266
HpyAV	CCTTC	3 cut(s)	49, 220, 228
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 40, 133, 248, 267
HpyF3I	CTNAG	4 cut(s)	128, 165, 369, 385
HpySE526I	ACGT	1 cut(s)	349
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	9 cut(s)	104, 158, 265, 307, 461, 568, 583, 595, 605
Lsp1109I	GCAGC	4 cut(s)	46, 76, 186, 612
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	3 cut(s)	95, 509, 525
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	6 cut(s)	86, 99, 117, 185, 215, 362
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
MboII	GAAGA	6 cut(s)	166, 169, 226, 370, 404, 515
MflI	RGATCY	2 cut(s)	183, 213
MhlI	GDGCHC	2 cut(s)	129, 532
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	1 cut(s)	286
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	3 cut(s)	161, 440, 442
MnlI	CCTC	7 cut(s)	58, 73, 115, 132, 505, 510, 541
Mox20I	TGGCCA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	432, 563
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	1 cut(s)	583
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	1 cut(s)	583
MvnI	CGCG	2 cut(s)	261, 282
MwoI	GCNNNNNNNGC	5 cut(s)	11, 40, 133, 248, 267
NdeII	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	620
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	36, 91, 176, 602
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
Psp124BI	GAGCTC	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	581
PspFI	CCCAGC	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	291
PsuI	RGATCY	2 cut(s)	183, 213
PsyI	GACNNNGTC	1 cut(s)	260
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	532
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	432, 563
SatI	GCNGC	4 cut(s)	35, 90, 175, 601
Sau3AI	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	2 cut(s)	129, 532
SetI	ASST	8 cut(s)	75, 126, 303, 352, 399, 477, 521, 532
SfaNI	GCATC	1 cut(s)	566
SmlI	CTYRAG	3 cut(s)	316, 398, 531
SmoI	CTYRAG	3 cut(s)	316, 398, 531
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	6 cut(s)	59, 136, 240, 259, 280, 389
SspMI	CTAG	3 cut(s)	95, 509, 525
SstI	GAGCTC	1 cut(s)	532
StyD4I	CCNGG	1 cut(s)	581
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	30, 75, 105
TasI	AATT	1 cut(s)	286
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	2 cut(s)	432, 563
Tru9I	TTAA	2 cut(s)	432, 563
TscAI	CASTG	2 cut(s)	259, 577
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	34, 89, 174, 600
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	167, 371
TspRI	CASTG	2 cut(s)	259, 577
Tth111I	GACNNNGTC	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	3 cut(s)	95, 509, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.