Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005041

Physical Location & Seq

Genomic Coordinates Reverse (-)

61348364 .. 61349494

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGATCAATGCTGAGAAAAGTCCATTCTTAGCGGAGAAGCTCAAGATTGTTGTTCTTCCAACCCTTGCCCTTATTAAGAATGCCATAGTGGATGATTATGTGGTTGGATTTGACGAGCTGGGTGGGAAAGACGACTTCAGCACAGAAGAACAAGAGGAGAGGTTGGCTAGAGCTCAAGTCATATTTTTTGAAGGTGAAGCATCTTTAAAGTCAGTGCGAAAACCAGGAGTGTCCGGCAAAGCAGCAAGGATGACTCATCAGATTCAGAGGAGCCTCCTGAGGTCCCTTCGACACTTCAAATTTGACAACAAAATTAGGGTGAATGCCAATGACAATCGCGAGTTCTCAACCAACGGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0018130 GO:0019438 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phosducin Thioredoxin

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

8.96

Isoelectric Point (pI)

26.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18990 AT3G25580 AT3G25580
fragaria_vesca	FvH4_2g04710 FvH4_2g04710
malus_domestica	MD05G1093600.v1.1
prunus_persica	Prupe.8G138300_v2.0.a1
pyrus_communis	pycom05g09270
rosa_chinensis	RchiOBHm_Chr6g0254311 RchiOBHm_Chr6g0254341 RchiOBHm_Chr6g0254381
rosa_laevigata	RLG00000014131 RLG00000014920 RLG00000014924
rosa_multiflora	Rmu_sc0006565.1_g000001 Rmu_sc0007138.1_g000010 Rmu_sc0015027.1_g000002 Rmu_sc0020698.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210880 Rroxscaffold_7G00210920 Rroxscaffold_7G00210940
rosa_rugosa	Rorug05G0551900
rosa_samantha	Rh6AG068400 Rh6AG068700 Rh6BG061500 Rh6CG060900 Rh6CG061400 Rh6DG058200 Rh6DG058600
rosa_wichuraiana	Rw6G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	342
AciI	CCGC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	194, 301
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	43, 121, 176
AluI	AGCT	3 cut(s)	43, 121, 176
Alw21I	GWGCWC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	209, 334
AvaII	GGWCC	1 cut(s)	285
AxyI	CCTNAGG	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	228
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	275, 287
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	212
BpuEI	CTTGAG	2 cut(s)	29, 162
Bse21I	CCTNAGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	100, 258
BseMII	CTCAG	2 cut(s)	6, 272
BseRI	GAGGAG	2 cut(s)	173, 286
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	2 cut(s)	88, 331
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	6
Bsp68I	TCGCGA	1 cut(s)	342
BspACI	CCGC	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	7, 273
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	275, 287
BssMI	GATC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	359
BstDEI	CTNAG	3 cut(s)	15, 31, 281
BstF5I	GGATG	2 cut(s)	100, 258
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	257
Bsu36I	CCTNAGG	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	100, 258
BtsIMutI	CAGTG	1 cut(s)	222
BtuMI	TCGCGA	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	285
CviJI	RGCY	5 cut(s)	43, 121, 170, 176, 276
CviKI_1	RGCY	5 cut(s)	43, 121, 170, 176, 276
DdeI	CTNAG	3 cut(s)	15, 31, 281
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
DraI	TTTAAA	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	178
FaiI	YATR	3 cut(s)	89, 102, 185
FaqI	GGGAC	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	2 cut(s)	107, 265
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	125
HapII	CCGG	1 cut(s)	237
HinfI	GANTC	2 cut(s)	256, 265
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	209, 334
Hpy188I	TCNGA	2 cut(s)	264, 270
Hpy188III	TCNNGA	3 cut(s)	46, 280, 341
HpyAV	CCTTC	2 cut(s)	188, 299
HpyCH4III	ACNGT	1 cut(s)	359
HpyF3I	CTNAG	3 cut(s)	15, 31, 281
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	5 cut(s)	107, 213, 240, 250, 293
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	171
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	3 cut(s)	16, 50, 161
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	2 cut(s)	302, 315
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	2 cut(s)	86, 88
MnlI	CCTC	5 cut(s)	151, 156, 264, 276, 287
MseI	TTAA	2 cut(s)	78, 209
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	2 cut(s)	88, 331
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	342
NdeII	GATC	1 cut(s)	6
NlaIV	GGNNCC	2 cut(s)	275, 287
NruI	TCGCGA	1 cut(s)	342
PctI	GAATGC	2 cut(s)	88, 331
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	275, 287
PspPI	GGNCC	1 cut(s)	285
PspPPI	RGGWCCY	1 cut(s)	285
RruI	TCGCGA	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	78, 209
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	6 cut(s)	45, 123, 167, 178, 199, 287
SfaNI	GCATC	1 cut(s)	212
SinI	GGWCC	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	44, 177
SmoI	CTYRAG	2 cut(s)	44, 177
Sse9I	AATT	2 cut(s)	302, 315
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	292
TasI	AATT	2 cut(s)	302, 315
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	78, 209
Tru9I	TTAA	2 cut(s)	78, 209
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	302
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.