Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009124

Physical Location & Seq

Genomic Coordinates Forward (+)

9813223 .. 9814752

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCGACGAAGCTGATTTCTCCGCCGTTGTCTTGTCCGTGGGTTACTTCAAGAGAGGTGATAATCAAAGGGCTTCCACGGCGGAGAAGAGAATGGATGGTCACGAAGAGAAACAGAGTCTCTGCTGTCACGGCCATGATTGTGGAGCCACTTTCTGTTGTTTCTTCTTCAGCAATTCAGATTCATCAATGGTGGGAACAAAACCCTAATTCGTTACTGTTAATGACGGAGGCTACTGGTGGTTATTCGTTGGCTAGCTATTATACGTCTTTGGGTTTGTTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTAATCAAACGCTCTGTTAAATCAAAGATAGTGAGAAAGACGTTTGTTGTTAATGACGTCAAGAAGGAGCCAAAGCAAGTAGCTGGAGAGATTCTATCTTTCTTCACAAGGAAGAATTTCAATATCACTGATCGTGGAGAAACAATCACATTTGAAGGAAAGATGGTTCCAAGTAGAGGACAAGCTGCTCTGCTTACGTTTTGTACATGTATAAGCTTAGCAAGTGTTGGTCTTGTCTTAACCATTACAGTTCCTGATTTTGGAAACAATTGGTTCTTCATCATTCTCCTTAGTCCACTCGCAGGAGTGTATTACTGGAAAAAGGCGTCGAGGAAAGAGGAGATAAAAGTGAAGATGATGGTGGGATCAAAAGGGAGATTGGATGAGATTGTGGTTCAAGGAGATGATGTTCAGGTCGAAGAAATGAGGAAAGAGCTTCAGCTTAATGAGAAAGGCATGGTTTATGTCAAAGGTCTCTTTGAGAGATCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB1

Protein Analysis

267

Amino Acids

30.1

Weight (kDa)

9.79

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB1	PF12046	86 - 251	2.7e-56	Cofactor assembly of complex C subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26710
fragaria_vesca	FvH4_6g54310 FvH4_6g54310
malus_domestica	MD04G1090800.v1.1 MD17G1006700.v1.1
prunus_persica	Prupe.3G313700_v2.0.a1 Prupe.3G313700_v2.0.a1
pyrus_communis	pycom17g00230
rosa_chinensis	RchiOBHm_Chr2g0176531
rosa_laevigata	RLG00000022420
rosa_multiflora	Rmu_co8078116.1_g000001 Rmu_co8095746.1_g000001 Rmu_sc0001417.1_g000006 Rmu_sc0011904.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076330
rosa_rugosa	Rorug02G0595800 Rorug02G0595900
rosa_samantha	Rh2AG673700 Rh2BG684900 Rh2CG647900 Rh2DG698800
rosa_wichuraiana	Rw2G055260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	369
AciI	CCGC	2 cut(s)	23, 82
AclWI	GGATC	1 cut(s)	682
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	2 cut(s)	153, 731
AcyI	GRCGYC	2 cut(s)	366, 635
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	3 cut(s)	485, 569, 611
AflIII	ACRYGT	1 cut(s)	515
AgsI	TTSAA	4 cut(s)	51, 430, 464, 707
AjnI	CCWGG	1 cut(s)	295
AloI	GAACNNNNNNTCC	4 cut(s)	459, 491, 702, 734
AluBI	AGCT	7 cut(s)	13, 258, 392, 494, 525, 745, 751
AluI	AGCT	7 cut(s)	13, 258, 392, 494, 525, 745, 751
Alw26I	GTCTC	3 cut(s)	124, 312, 788
AlwI	GGATC	1 cut(s)	682
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	424
Asp700I	GAANNNNTTC	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	70
AsuNHI	GCTAGC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	3 cut(s)	91, 466, 661
BceAI	ACGGC	3 cut(s)	10, 95, 147
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	3 cut(s)	124, 312, 788
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	495
BlpI	GCTNAGC	1 cut(s)	526
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	147, 378, 477
BmrFI	CCNGG	1 cut(s)	297
BmtI	GCTAGC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	526
BsaHI	GRCGYC	2 cut(s)	366, 635
BsaI	GGTCTC	2 cut(s)	312, 788
BsaJI	CCNNGG	2 cut(s)	38, 77
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	3 cut(s)	485, 569, 611
Bse1I	ACTGG	2 cut(s)	241, 629
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	38, 77
BseGI	GGATG	2 cut(s)	102, 697
BseLI	CCNNNNNNNGG	3 cut(s)	485, 569, 611
BseNI	ACTGG	2 cut(s)	241, 629
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	1 cut(s)	481
BshFI	GGCC	1 cut(s)	134
BslI	CCNNNNNNNGG	3 cut(s)	485, 569, 611
BsmAI	GTCTC	3 cut(s)	124, 312, 788
BsnI	GGCC	1 cut(s)	134
Bso31I	GGTCTC	2 cut(s)	312, 788
Bsp1407I	TGTACA	1 cut(s)	512
Bsp143I	GATC	3 cut(s)	439, 674, 794
Bsp1720I	GCTNAGC	1 cut(s)	526
BspACI	CCGC	2 cut(s)	23, 82
BspANI	GGCC	1 cut(s)	134
BspLI	GGNNCC	3 cut(s)	147, 378, 477
BspOI	GCTAGC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	682
BspTNI	GGTCTC	2 cut(s)	312, 788
BsrGI	TGTACA	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	241, 629
BssECI	CCNNGG	2 cut(s)	38, 77
BssMI	GATC	3 cut(s)	439, 674, 794
BssNI	GRCGYC	2 cut(s)	366, 635
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	219, 559
Bst6I	CTCTTC	2 cut(s)	82, 101
BstACI	GRCGYC	2 cut(s)	366, 635
BstAUI	TGTACA	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	526, 599
BstDSI	CCRYGG	2 cut(s)	38, 77
BstF5I	GGATG	2 cut(s)	102, 697
BstKTI	GATC	3 cut(s)	442, 677, 797
BstMAI	GTCTC	3 cut(s)	124, 312, 788
BstMBI	GATC	3 cut(s)	439, 674, 794
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 131
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	481
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	2 cut(s)	38, 77
BtsCI	GGATG	2 cut(s)	102, 697
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	563
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	3 cut(s)	136, 516, 766
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	2 cut(s)	526, 599
DpnI	GATC	3 cut(s)	441, 676, 796
DpnII	GATC	3 cut(s)	439, 674, 794
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	82, 101
EarI	CTCTTC	2 cut(s)	82, 101
EciI	GGCGGA	2 cut(s)	12, 97
Eco31I	GGTCTC	2 cut(s)	312, 788
Eco57I	CTGAAG	2 cut(s)	153, 731
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	139, 519, 769
FaiI	YATR	7 cut(s)	137, 264, 517, 521, 767, 774, 802
FatI	CATG	3 cut(s)	135, 515, 765
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	2 cut(s)	109, 704
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	134
HgaI	GACGC	1 cut(s)	624
Hin1I	GRCGYC	2 cut(s)	366, 635
Hin1II	CATG	3 cut(s)	139, 519, 769
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	3 cut(s)	117, 181, 400
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	4 cut(s)	51, 103, 370, 563
Hpy8I	GTNNAC	1 cut(s)	605
Hpy99I	CGWCG	2 cut(s)	10, 640
HpyAV	CCTTC	2 cut(s)	367, 458
HpyCH4III	ACNGT	2 cut(s)	219, 559
HpyCH4IV	ACGT	4 cut(s)	266, 350, 366, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 131
HpyF3I	CTNAG	2 cut(s)	526, 599
HpySE526I	ACGT	4 cut(s)	266, 350, 366, 506
Hsp92I	GRCGYC	2 cut(s)	366, 635
Hsp92II	CATG	3 cut(s)	139, 519, 769
Kzo9I	GATC	3 cut(s)	439, 674, 794
LmnI	GCTCC	2 cut(s)	145, 376
LpnPI	CCDG	8 cut(s)	222, 282, 309, 378, 576, 597, 610, 707
Lsp1109I	GCAGC	1 cut(s)	481
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	4 cut(s)	266, 350, 366, 506
MaeIII	GTNAC	4 cut(s)	43, 100, 127, 213
MalI	GATC	3 cut(s)	441, 676, 796
MboI	GATC	3 cut(s)	439, 674, 794
MboII	GAAGA	9 cut(s)	99, 118, 156, 159, 403, 433, 577, 673, 740
MfeI	CAATTG	1 cut(s)	577
MluCI	AATT	4 cut(s)	174, 208, 424, 577
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	6 cut(s)	49, 223, 479, 633, 640, 729
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	5 cut(s)	221, 327, 360, 548, 753
MslI	CAYNNNNRTG	2 cut(s)	134, 140
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	577
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	79, 131
NdeII	GATC	3 cut(s)	439, 674, 794
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	3 cut(s)	139, 519, 769
NlaIV	GGNNCC	3 cut(s)	147, 378, 477
NmuCI	GTSAC	2 cut(s)	100, 127
NspI	RCATGY	1 cut(s)	519
PciI	ACATGT	1 cut(s)	515
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	181, 400
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PscI	ACATGT	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	3 cut(s)	147, 378, 477
PstNI	CAGNNNCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
RseI	CAYNNNNRTG	2 cut(s)	134, 140
SaqAI	TTAA	5 cut(s)	221, 327, 360, 548, 753
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	3 cut(s)	439, 674, 794
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	297
SmiMI	CAYNNNNRTG	2 cut(s)	134, 140
Sse9I	AATT	4 cut(s)	174, 208, 424, 577
SsiI	CCGC	2 cut(s)	23, 82
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	2 cut(s)	219, 559
TaiI	ACGT	4 cut(s)	269, 353, 369, 509
TaqI	TCGA	2 cut(s)	638, 726
TasI	AATT	4 cut(s)	174, 208, 424, 577
TatI	WGTACW	1 cut(s)	512
TfiI	GAWTC	2 cut(s)	181, 400
Tru1I	TTAA	5 cut(s)	221, 327, 360, 548, 753
Tru9I	TTAA	5 cut(s)	221, 327, 360, 548, 753
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	2 cut(s)	100, 127
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	2 cut(s)	100, 127
TspDTI	ATGAA	2 cut(s)	173, 577
TspGWI	ACGGA	2 cut(s)	27, 242
TspRI	CASTG	1 cut(s)	442
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.