Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009124

Physical Location & Seq

Genomic Coordinates Forward (+)

71695476 .. 71696350

Gene Structure 875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0595900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCCAAACACAAAACCAGCCCTCCCTACCAGCAACACCAAATATTGCCCCCCTCCTACACGTGATGCTCAATTTACTATTAGCTTGCCGTCCGTTGTGTTCATTAACCTCACAATAACAACCTTCACAACCATGTACCGCGCGCAGCAGCACCACGACACCACCTTGCTCGCTTTCCTCGCATTCGTTTACGCGTCCTATTTCATCCTCCATAACTGTGTAGAAGTGTACAGTCAACTGCCCAAGGGCGAAAAGTCGACGAAGAAAGAGCTGCTGAGGTTCACTCTGTGGTTTTTGCCAACTGCAGTGCTGTTGGGATTTGCAGCTGAGTTTGGGACTTTCATGAACGTGACTGTGGTTGTGCTCATGTACTGTCTCGCCATTGCTAGCAGCTTGTTGCTGTTCTATGTCCACTACATTCATGACGATCAAAAGGGACATGCTTGTCCTATTCAGAAGAGTAACAACAAGCATGATCATGTACCAATTGCCCAAAACATTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB1

Protein Analysis

168

Amino Acids

19.01

Weight (kDa)

8.67

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF6490	PF20100	37 - 139	4e-06	Family of unknown function (DUF6490)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26710
fragaria_vesca	FvH4_6g54310 FvH4_6g54310
malus_domestica	MD04G1090800.v1.1 MD17G1006700.v1.1
prunus_persica	Prupe.3G313700_v2.0.a1 Prupe.3G313700_v2.0.a1
pyrus_communis	pycom17g00230
rosa_chinensis	RchiOBHm_Chr2g0176531
rosa_laevigata	RLG00000022420
rosa_multiflora	Rmu_co8078116.1_g000001 Rmu_co8095746.1_g000001 Rmu_sc0001417.1_g000006 Rmu_sc0011904.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076330
rosa_rugosa	Rorug02G0595800 Rorug02G0595900
rosa_samantha	Rh2AG673700 Rh2BG684900 Rh2CG647900 Rh2DG698800
rosa_wichuraiana	Rw2G055260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	3 cut(s)	141, 143, 194
AciI	CCGC	1 cut(s)	139
AcvI	CACGTG	1 cut(s)	62
AdeI	CACNNNGTG	1 cut(s)	288
AfaI	GTAC	4 cut(s)	137, 230, 371, 483
AflIII	ACRYGT	2 cut(s)	59, 192
AluBI	AGCT	4 cut(s)	84, 271, 326, 393
AluI	AGCT	4 cut(s)	84, 271, 326, 393
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	380
ApeKI	GCWGC	5 cut(s)	145, 148, 271, 323, 390
AspLEI	GCGC	2 cut(s)	143, 145
AsuNHI	GCTAGC	1 cut(s)	386
BbrPI	CACGTG	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	275
BbvI	GCAGC	5 cut(s)	157, 160, 258, 335, 402
BceAI	ACGGC	1 cut(s)	73
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	5 cut(s)	146, 149, 272, 324, 391
BlsI	GCNGC	5 cut(s)	147, 150, 273, 325, 392
BmsI	GCATC	1 cut(s)	55
BmtI	GCTAGC	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
Bpu10I	CCTNAGC	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse3DI	GCAATG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	266, 318
BsePI	GCGCGC	1 cut(s)	141
BseXI	GCAGC	5 cut(s)	157, 160, 258, 335, 402
Bsh1236I	CGCG	3 cut(s)	141, 143, 194
BsiHKAI	GWGCWC	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	349, 450
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	349, 450
BsmI	GAATGC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	427, 475
BspACI	CCGC	1 cut(s)	139
BspCNI	CTCAG	2 cut(s)	267, 319
BspFNI	CGCG	3 cut(s)	141, 143, 194
BspHI	TCATGA	2 cut(s)	342, 421
BspMAI	CTGCAG	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	243
BssHII	GCGCGC	1 cut(s)	141
BssMI	GATC	2 cut(s)	427, 475
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	4 cut(s)	218, 233, 355, 374
Bst6I	CTCTTC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	62
BstC8I	GCNNGC	4 cut(s)	86, 143, 171, 388
BstDEI	CTNAG	2 cut(s)	275, 327
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	3 cut(s)	141, 143, 194
BstHHI	GCGC	2 cut(s)	143, 145
BstKTI	GATC	2 cut(s)	430, 478
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	2 cut(s)	427, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	443
BstSFI	CTRYAG	1 cut(s)	303
BstUI	CGCG	3 cut(s)	141, 143, 194
BstV1I	GCAGC	5 cut(s)	157, 160, 258, 335, 402
BtsCI	GGATG	1 cut(s)	204
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	4 cut(s)	86, 143, 171, 388
CciI	TCATGA	2 cut(s)	342, 421
CfoI	GCGC	2 cut(s)	143, 145
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	4 cut(s)	136, 229, 370, 482
CviAII	CATG	7 cut(s)	133, 343, 367, 422, 440, 473, 479
CviJI	RGCY	5 cut(s)	20, 84, 271, 326, 393
CviKI_1	RGCY	5 cut(s)	20, 84, 271, 326, 393
CviQI	GTAC	4 cut(s)	136, 229, 370, 482
DdeI	CTNAG	2 cut(s)	275, 327
DpnI	GATC	2 cut(s)	429, 477
DpnII	GATC	2 cut(s)	427, 475
DraIII	CACNNNGTG	1 cut(s)	288
DrdI	GACNNNNNNGTC	1 cut(s)	444
DseDI	GACNNNNNNGTC	1 cut(s)	444
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco130I	CCWWGG	1 cut(s)	243
Eco72I	CACGTG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	7 cut(s)	136, 346, 370, 425, 443, 476, 482
FaiI	YATR	9 cut(s)	134, 213, 344, 368, 408, 423, 441, 474, 480
FaqI	GGGAC	2 cut(s)	349, 450
FatI	CATG	7 cut(s)	132, 342, 366, 421, 439, 472, 478
FbaI	TGATCA	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	5 cut(s)	146, 149, 272, 324, 391
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	5 cut(s)	146, 149, 272, 324, 391
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	2 cut(s)	142, 144
GluI	GCNGC	5 cut(s)	146, 149, 272, 324, 391
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	2 cut(s)	143, 145
Hin1II	CATG	7 cut(s)	136, 346, 370, 425, 443, 476, 482
Hin6I	GCGC	2 cut(s)	141, 143
HinP1I	GCGC	2 cut(s)	141, 143
HincII	GTYRAC	2 cut(s)	236, 258
HindII	GTYRAC	2 cut(s)	236, 258
Hpy166II	GTNNAC	6 cut(s)	190, 229, 236, 258, 282, 412
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	2 cut(s)	343, 422
Hpy8I	GTNNAC	6 cut(s)	190, 229, 236, 258, 282, 412
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	4 cut(s)	218, 233, 355, 374
HpyCH4IV	ACGT	2 cut(s)	61, 348
HpyCH4V	TGCA	2 cut(s)	305, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	275, 327
HpySE526I	ACGT	2 cut(s)	61, 348
Hsp92II	CATG	7 cut(s)	136, 346, 370, 425, 443, 476, 482
HspAI	GCGC	2 cut(s)	141, 143
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	427, 475
LpnPI	CCDG	2 cut(s)	30, 43
Lsp1109I	GCAGC	5 cut(s)	157, 160, 258, 335, 402
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	2 cut(s)	61, 348
MaeIII	GTNAC	2 cut(s)	349, 461
MalI	GATC	2 cut(s)	429, 477
MboI	GATC	2 cut(s)	427, 475
MboII	GAAGA	2 cut(s)	274, 469
MfeI	CAATTG	1 cut(s)	486
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	2 cut(s)	71, 486
MluI	ACGCGT	1 cut(s)	192
MnlI	CCTC	6 cut(s)	32, 63, 119, 188, 218, 270
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	4 cut(s)	131, 216, 347, 477
MspA1I	CMGCKG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	182
MvnI	CGCG	3 cut(s)	141, 143, 194
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	2 cut(s)	427, 475
NheI	GCTAGC	1 cut(s)	386
NlaIII	CATG	7 cut(s)	136, 346, 370, 425, 443, 476, 482
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	443
PagI	TCATGA	2 cut(s)	342, 421
PauI	GCGCGC	1 cut(s)	141
PctI	GAATGC	1 cut(s)	182
PkrI	GCNGC	5 cut(s)	147, 150, 273, 325, 392
PmaCI	CACGTG	1 cut(s)	62
PmlI	CACGTG	1 cut(s)	62
Ppu21I	YACGTR	1 cut(s)	62
PspCI	CACGTG	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	307
PteI	GCGCGC	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	4 cut(s)	137, 230, 371, 483
RsaNI	GTAC	4 cut(s)	136, 229, 370, 482
RseI	CAYNNNNRTG	4 cut(s)	131, 216, 347, 477
SalI	GTCGAC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	5 cut(s)	146, 149, 272, 324, 391
Sau3AI	GATC	2 cut(s)	427, 475
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	4 cut(s)	131, 216, 347, 477
Sse9I	AATT	2 cut(s)	71, 486
SsiI	CCGC	1 cut(s)	139
SspI	AATATT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	4 cut(s)	218, 233, 355, 374
TaiI	ACGT	2 cut(s)	64, 351
TaqI	TCGA	1 cut(s)	257
TasI	AATT	2 cut(s)	71, 486
TatI	WGTACW	2 cut(s)	228, 369
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	5 cut(s)	145, 148, 271, 323, 390
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	5 cut(s)	91, 193, 331, 359, 410
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	312
XceI	RCATGY	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.