Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001417.1

Orthogroup ID

OG0009124

Physical Location & Seq

Genomic Coordinates Forward (+)

11010 .. 12007

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001417.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggcagctaaagtgttttcatggactccgagtattccatctctcagtccttccaaattacgccaagctcagccgcagcagccatggctgagtcgacgctcaagcgccaagaagagatctgcactggtcgttcgtgcctcccttcccgagtctctcatggcttcttctcctcctcctcttctgctactggaacaactccatcagcagacaccatcaacctcgctgtttctgctggctgcagacaccgccggttactccttggccagttactacacttctttgggtctcttcgtcatctctgttccaggcctttggtccctcatcaaacgttctgttaaatccaagatcgtgcagaagacatttattggggaagagaagaaggcaccaaatcaagtcgcaggtgaaattctctccttcttcactcgcaacaattttgtggtcactgatagaggagagaccatcacgtttgaaggcatgatggttccaagtcgaggccaagcagcactgctgaccttttgcacctgcatcagcctcgcaagtgtagcccttgttcttacaataactgttccagatttcggcaacaattggttttggatcaccaccttaagtccattggcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB1

Protein Analysis

206

Amino Acids

22.51

Weight (kDa)

9.95

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26710
fragaria_vesca	FvH4_6g54310 FvH4_6g54310
malus_domestica	MD04G1090800.v1.1 MD17G1006700.v1.1
prunus_persica	Prupe.3G313700_v2.0.a1 Prupe.3G313700_v2.0.a1
pyrus_communis	pycom17g00230
rosa_chinensis	RchiOBHm_Chr2g0176531
rosa_laevigata	RLG00000022420
rosa_multiflora	Rmu_co8078116.1_g000001 Rmu_co8095746.1_g000001 Rmu_sc0001417.1_g000006 Rmu_sc0011904.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076330
rosa_rugosa	Rorug02G0595800 Rorug02G0595900
rosa_samantha	Rh2AG673700 Rh2BG684900 Rh2CG647900 Rh2DG698800
rosa_wichuraiana	Rw2G055260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	389, 530
Acc36I	ACCTGC	2 cut(s)	389, 530
AccB1I	GGYRCC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	94
AciI	CCGC	2 cut(s)	74, 246
AclI	AACGTT	1 cut(s)	328
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	491, 575
AflII	CTTAAG	1 cut(s)	604
AgsI	TTSAA	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	8, 68
AluI	AGCT	2 cut(s)	8, 68
Alw26I	GTCTC	3 cut(s)	156, 290, 449
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	261, 307, 493
ApeKI	GCWGC	5 cut(s)	5, 76, 79, 236, 500
ApoI	RAATTY	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	413, 589
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	5 cut(s)	17, 88, 91, 223, 512
BccI	CCATC	5 cut(s)	46, 207, 220, 467, 472
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	156, 290, 449
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	604
BfuAI	ACCTGC	2 cut(s)	389, 530
BglII	AGATCT	1 cut(s)	116
BisI	GCNGC	6 cut(s)	6, 74, 77, 80, 237, 501
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	6 cut(s)	7, 75, 78, 81, 238, 502
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	3 cut(s)	317, 384, 483
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	85
BsaI	GGTCTC	2 cut(s)	290, 449
BsaJI	CCNNGG	2 cut(s)	83, 258
Bsc4I	CCNNNNNNNGG	2 cut(s)	491, 575
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	3 cut(s)	129, 192, 264
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	83, 258
BseLI	CCNNNNNNNGG	2 cut(s)	491, 575
BseMII	CTCAG	3 cut(s)	58, 80, 83
BseNI	ACTGG	3 cut(s)	129, 192, 264
BseRI	GAGGAG	4 cut(s)	159, 162, 165, 465
BseXI	GCAGC	5 cut(s)	17, 88, 91, 223, 512
BsgI	GTGCAG	2 cut(s)	105, 371
BshFI	GGCC	3 cut(s)	263, 309, 495
BshNI	GGYRCC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	2 cut(s)	491, 575
BsmAI	GTCTC	3 cut(s)	156, 290, 449
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	263, 309, 495
Bso31I	GGTCTC	2 cut(s)	290, 449
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	116, 345, 594
Bsp1720I	GCTNAGC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	2 cut(s)	74, 246
BspANI	GGCC	3 cut(s)	263, 309, 495
BspCNI	CTCAG	3 cut(s)	57, 81, 82
BspLI	GGNNCC	3 cut(s)	317, 384, 483
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	2 cut(s)	389, 530
BspPI	GGATC	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	382
BspTI	CTTAAG	1 cut(s)	604
BspTNI	GGTCTC	2 cut(s)	290, 449
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	129, 192, 264
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	83, 258
BssMI	GATC	3 cut(s)	116, 345, 594
BssT1I	CCWWGG	2 cut(s)	83, 258
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	4 cut(s)	107, 183, 293, 366
BstAFI	CTTAAG	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	44, 69, 89
BstDSI	CCRYGG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	3 cut(s)	119, 348, 597
BstMAI	GTCTC	3 cut(s)	156, 290, 449
BstMBI	GATC	3 cut(s)	116, 345, 594
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 85, 229, 245, 542
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	5 cut(s)	17, 88, 91, 223, 512
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	263, 309, 495
BtgI	CCRYGG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	3 cut(s)	122, 441, 503
BveI	ACCTGC	2 cut(s)	389, 530
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	315
CseI	GACGC	1 cut(s)	105
CviAII	CATG	4 cut(s)	21, 84, 157, 475
DdeI	CTNAG	3 cut(s)	44, 69, 89
DpnI	GATC	3 cut(s)	118, 347, 596
DpnII	GATC	3 cut(s)	116, 345, 594
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	4 cut(s)	107, 183, 293, 366
EarI	CTCTTC	4 cut(s)	107, 183, 293, 366
Eco130I	CCWWGG	2 cut(s)	83, 258
Eco147I	AGGCCT	1 cut(s)	309
Eco31I	GGTCTC	2 cut(s)	290, 449
Eco47I	GGWCC	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	83, 258
ErhI	CCWWGG	2 cut(s)	83, 258
FaeI	CATG	4 cut(s)	24, 87, 160, 478
FaiI	YATR	4 cut(s)	22, 85, 158, 476
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	4 cut(s)	20, 83, 156, 474
FblI	GTMKAC	1 cut(s)	94
Fnu4HI	GCNGC	6 cut(s)	6, 74, 77, 80, 237, 501
Fsp4HI	GCNGC	6 cut(s)	6, 74, 77, 80, 237, 501
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	6 cut(s)	6, 74, 77, 80, 237, 501
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	263, 309, 495
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	4 cut(s)	24, 87, 160, 478
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HinfI	GANTC	3 cut(s)	25, 91, 149
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	413, 589
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	146, 569
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	5 cut(s)	60, 152, 373, 424, 464
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4IV	ACGT	2 cut(s)	328, 464
HpyCH4V	TGCA	5 cut(s)	122, 239, 352, 519, 525
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 85, 229, 245, 542
HpyF3I	CTNAG	3 cut(s)	44, 69, 89
HpySE526I	ACGT	2 cut(s)	328, 464
Hsp92II	CATG	4 cut(s)	24, 87, 160, 478
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	3 cut(s)	116, 345, 594
Lsp1109I	GCAGC	5 cut(s)	17, 88, 91, 223, 512
LweI	GCATC	1 cut(s)	534
MaeII	ACGT	2 cut(s)	328, 464
MaeIII	GTNAC	3 cut(s)	251, 266, 439
MalI	GATC	3 cut(s)	118, 347, 596
MboI	GATC	3 cut(s)	116, 345, 594
MboII	GAAGA	8 cut(s)	124, 156, 170, 280, 367, 383, 388, 409
MfeI	CAATTG	1 cut(s)	583
MflI	RGATCY	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	4 cut(s)	56, 405, 430, 583
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	3 cut(s)	19, 100, 158
MnlI	CCTC	9 cut(s)	148, 180, 183, 186, 229, 329, 443, 485, 542
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	2 cut(s)	336, 605
Msp20I	TGGCCA	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	604
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	5 cut(s)	79, 85, 229, 245, 542
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	3 cut(s)	116, 345, 594
NlaIII	CATG	4 cut(s)	24, 87, 160, 478
NlaIV	GGNNCC	3 cut(s)	317, 384, 483
NmuCI	GTSAC	1 cut(s)	439
PaqCI	CACCTGC	2 cut(s)	389, 530
PceI	AGGCCT	1 cut(s)	309
PkrI	GCNGC	6 cut(s)	7, 75, 78, 81, 238, 502
PleI	GAGTC	3 cut(s)	19, 99, 157
PpsI	GAGTC	3 cut(s)	19, 99, 157
Psp1406I	AACGTT	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	317, 384, 483
PspPI	GGNCC	1 cut(s)	315
PsrI	GAACNNNNNNTAC	2 cut(s)	534, 566
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	336, 605
SatI	GCNGC	6 cut(s)	6, 74, 77, 80, 237, 501
Sau3AI	GATC	3 cut(s)	116, 345, 594
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	19, 100, 158
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	9 cut(s)	10, 70, 221, 331, 403, 467, 515, 524, 605
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	100, 604
SmoI	CTYRAG	2 cut(s)	100, 604
Sse9I	AATT	4 cut(s)	56, 405, 430, 583
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	2 cut(s)	74, 246
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	83, 258
TaaI	ACNGT	1 cut(s)	565
TaiI	ACGT	2 cut(s)	331, 467
TaqI	TCGA	2 cut(s)	94, 490
TasI	AATT	4 cut(s)	56, 405, 430, 583
TauI	GCSGC	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	336, 605
Tru9I	TTAA	2 cut(s)	336, 605
TscAI	CASTG	3 cut(s)	129, 448, 510
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	5 cut(s)	5, 76, 79, 236, 500
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	9
TspRI	CASTG	3 cut(s)	129, 448, 510
Vha464I	CTTAAG	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.