Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009124

Physical Location & Seq

Genomic Coordinates Reverse (-)

152562 .. 153818

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00230.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCAGCGAAAGTGCTATCATCCCCTCCGCACCCGCATCCAAATCCTCTCAGTTCTCGTCCTCTGAAAATACTCCACGAAACCCACCACCAGCATAGGCAGCAGCAGCCATGGCGGCTGAGCCAGCGTTCATCAGGAAGTTCAGGAACCAACAAGAAGAGAGAGGTGGTGATGAGCTCCCTCCACCAGTCTCTTGTTAGTACGTCGTCGTCTCTGGTACCTCTCTTACTGGAACCACCGCAGCAACTCAATGCATCCAGCAGCAGCATCAGCAGCTCCCTCATGTTTGTGATTGCAGCTGCAGACGGCGCCGTAGGTTATTCGTTGGCCAGTTACTACACATCCCTGGGTCTCTTCGTCATCTCTGTTCCTGGCCTTTGGTCCCTCATCAAACGTTCTGTTAAATCCAAGGTCGTGCAGAAGACGTTTGTAGGTGAAGAGAAGAAGGCACCAAGCCAAGTCGCCGGTGAAATCCTCTCTTTTTTCACTCGCAACAATTTTGTGGTCACTGATCGAGGGGAGACCATTACGTTTGAAGGCATGATGGTTCCAAGTCGAGGCCAAGCGGCATTGCTCACTTTTTGCACCTGCATCAGCCTTGCAAGCGTAGCTCTTGTTCTTACCATAACTGTTCCTGATTTCGGCAATAACTGGTTTTGGCTCACCACCTTAAGTCCGTTGGCGGGCGCATATTACTGGAAGCGAGCATCACGAAAGGAGCAGATCGATCAAAGGTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB1

Protein Analysis

248

Amino Acids

27.09

Weight (kDa)

10.01

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26710
fragaria_vesca	FvH4_6g54310 FvH4_6g54310
malus_domestica	MD04G1090800.v1.1 MD17G1006700.v1.1
prunus_persica	Prupe.3G313700_v2.0.a1 Prupe.3G313700_v2.0.a1
pyrus_communis	pycom17g00230
rosa_chinensis	RchiOBHm_Chr2g0176531
rosa_laevigata	RLG00000022420
rosa_multiflora	Rmu_co8078116.1_g000001 Rmu_co8095746.1_g000001 Rmu_sc0001417.1_g000006 Rmu_sc0011904.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076330
rosa_rugosa	Rorug02G0595800 Rorug02G0595900
rosa_samantha	Rh2AG673700 Rh2BG684900 Rh2CG647900 Rh2DG698800
rosa_wichuraiana	Rw2G055260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	596
Acc65I	GGTACC	1 cut(s)	217
AccB1I	GGYRCC	3 cut(s)	217, 308, 448
AciI	CCGC	6 cut(s)	29, 35, 115, 239, 566, 683
AclI	AACGTT	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	2 cut(s)	202, 219
AfiI	CCNNNNNNNGG	3 cut(s)	557, 641, 683
AflII	CTTAAG	1 cut(s)	670
AgsI	TTSAA	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	345, 370
AluBI	AGCT	4 cut(s)	177, 276, 299, 611
AluI	AGCT	4 cut(s)	177, 276, 299, 611
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	4 cut(s)	195, 216, 356, 515
AoxI	GGCC	3 cut(s)	327, 373, 559
Asp718I	GGTACC	1 cut(s)	217
AspLEI	GCGC	2 cut(s)	311, 689
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	4 cut(s)	181, 446, 479, 655
AvaII	GGWCC	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	329
BanI	GGYRCC	3 cut(s)	217, 308, 448
BanII	GRGCYC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	179
BccI	CCATC	1 cut(s)	538
BceAI	ACGGC	2 cut(s)	296, 322
BciT130I	CCWGG	2 cut(s)	347, 372
BcoDI	GTCTC	4 cut(s)	195, 216, 356, 515
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	670
BfuAI	ACCTGC	1 cut(s)	596
BglI	GCCNNNNNGGC	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	347, 372
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	7 cut(s)	148, 219, 234, 310, 383, 450, 549
BmrFI	CCNGG	2 cut(s)	347, 372
BmsI	GCATC	5 cut(s)	46, 263, 276, 600, 716
BpiI	GAAGAC	1 cut(s)	428
Bpu1102I	GCTNAGC	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	726
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	2 cut(s)	356, 515
BsaJI	CCNNGG	4 cut(s)	110, 345, 346, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	557, 641, 683
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	5 cut(s)	187, 234, 330, 656, 701
Bse3DI	GCAATG	1 cut(s)	569
BseBI	CCWGG	2 cut(s)	347, 372
BseCI	ATCGAT	1 cut(s)	726
BseDI	CCNNGG	4 cut(s)	110, 345, 346, 408
BseGI	GGATG	4 cut(s)	20, 37, 254, 341
BseLI	CCNNNNNNNGG	3 cut(s)	557, 641, 683
BseMI	GCAATG	1 cut(s)	569
BseMII	CTCAG	2 cut(s)	64, 110
BseNI	ACTGG	5 cut(s)	187, 234, 330, 656, 701
BsgI	GTGCAG	1 cut(s)	437
BshFI	GGCC	3 cut(s)	329, 375, 561
BshNI	GGYRCC	3 cut(s)	217, 308, 448
BshVI	ATCGAT	1 cut(s)	726
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	3 cut(s)	557, 641, 683
BsmAI	GTCTC	4 cut(s)	195, 216, 356, 515
BsmBI	CGTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	329, 375, 561
Bso31I	GGTCTC	2 cut(s)	356, 515
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	3 cut(s)	511, 723, 727
Bsp1720I	GCTNAGC	1 cut(s)	119
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	6 cut(s)	29, 35, 115, 239, 566, 683
BspANI	GGCC	3 cut(s)	329, 375, 561
BspCNI	CTCAG	2 cut(s)	63, 111
BspDI	ATCGAT	1 cut(s)	726
BspLI	GGNNCC	7 cut(s)	148, 219, 234, 310, 383, 450, 549
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	596
BspT107I	GGYRCC	3 cut(s)	217, 308, 448
BspTI	CTTAAG	1 cut(s)	670
BspTNI	GGTCTC	2 cut(s)	356, 515
BsrDI	GCAATG	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	5 cut(s)	187, 234, 330, 656, 701
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	4 cut(s)	110, 345, 346, 408
BssMI	GATC	3 cut(s)	511, 723, 727
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	2 cut(s)	110, 408
Bst2UI	CCWGG	2 cut(s)	347, 372
Bst4CI	ACNGT	1 cut(s)	631
Bst6I	CTCTTC	3 cut(s)	152, 359, 432
BstACI	GRCGYC	1 cut(s)	309
BstAFI	CTTAAG	1 cut(s)	670
BstC8I	GCNNGC	4 cut(s)	125, 604, 685, 705
BstDEI	CTNAG	2 cut(s)	50, 119
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	4 cut(s)	20, 37, 254, 341
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	311, 689
BstKTI	GATC	3 cut(s)	514, 726, 730
BstMAI	GTCTC	4 cut(s)	195, 216, 356, 515
BstMBI	GATC	3 cut(s)	511, 723, 727
BstNI	CCWGG	2 cut(s)	347, 372
BstSCI	CCNGG	2 cut(s)	345, 370
BstSFI	CTRYAG	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	428
Bsu15I	ATCGAT	1 cut(s)	726
BsuRI	GGCC	3 cut(s)	329, 375, 561
BsuTUI	ATCGAT	1 cut(s)	726
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	4 cut(s)	20, 37, 254, 341
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	1 cut(s)	596
Cac8I	GCNNGC	4 cut(s)	125, 604, 685, 705
CfoI	GCGC	2 cut(s)	311, 689
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	381
ClaI	ATCGAT	1 cut(s)	726
Csp6I	GTAC	2 cut(s)	201, 218
CviAII	CATG	3 cut(s)	111, 283, 541
CviQI	GTAC	2 cut(s)	201, 218
DdeI	CTNAG	2 cut(s)	50, 119
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	3 cut(s)	513, 725, 729
DpnII	GATC	3 cut(s)	511, 723, 727
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	3 cut(s)	152, 359, 432
EarI	CTCTTC	3 cut(s)	152, 359, 432
Ecl136II	GAGCTC	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	110, 408
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	2 cut(s)	356, 515
Eco47I	GGWCC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	177
EcoRII	CCWGG	2 cut(s)	345, 370
EcoT14I	CCWWGG	2 cut(s)	110, 408
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	179
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
ErhI	CCWWGG	2 cut(s)	110, 408
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	3 cut(s)	114, 286, 544
FaiI	YATR	6 cut(s)	96, 112, 284, 542, 626, 691
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	110, 282, 540
FauI	CCCGC	2 cut(s)	42, 676
FokI	GGATG	4 cut(s)	7, 24, 241, 328
FriOI	GRGCYC	1 cut(s)	179
GlaI	GCGC	2 cut(s)	310, 688
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	329, 375, 561
HapII	CCGG	1 cut(s)	465
HhaI	GCGC	2 cut(s)	311, 689
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	114, 286, 544
Hin6I	GCGC	2 cut(s)	309, 687
HinP1I	GCGC	2 cut(s)	309, 687
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	4 cut(s)	181, 446, 479, 655
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	4 cut(s)	135, 144, 635, 711
Hpy99I	CGWCG	2 cut(s)	208, 211
HpyAV	CCTTC	2 cut(s)	439, 530
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4IV	ACGT	4 cut(s)	203, 394, 425, 530
HpyCH4V	TGCA	7 cut(s)	254, 296, 302, 418, 585, 591, 602
HpyF3I	CTNAG	2 cut(s)	50, 119
HpySE526I	ACGT	4 cut(s)	203, 394, 425, 530
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	114, 286, 544
HspAI	GCGC	2 cut(s)	309, 687
KasI	GGCGCC	1 cut(s)	308
KpnI	GGTACC	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	511, 723, 727
LmnI	GCTCC	3 cut(s)	182, 281, 718
LweI	GCATC	5 cut(s)	46, 263, 276, 600, 716
MaeII	ACGT	4 cut(s)	203, 394, 425, 530
MaeIII	GTNAC	2 cut(s)	332, 505
MalI	GATC	3 cut(s)	513, 725, 729
MboI	GATC	3 cut(s)	511, 723, 727
MboII	GAAGA	5 cut(s)	169, 346, 433, 449, 454
MhlI	GDGCHC	1 cut(s)	179
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	1 cut(s)	496
MluNI	TGGCCA	1 cut(s)	329
Mly113I	GGCGCC	1 cut(s)	309
Mox20I	TGGCCA	1 cut(s)	329
Mph1103I	ATGCAT	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	2 cut(s)	402, 671
MslI	CAYNNNNRTG	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	670
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	2 cut(s)	347, 372
MvaI	CCWGG	2 cut(s)	347, 372
NarI	GGCGCC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	3 cut(s)	511, 723, 727
NlaIII	CATG	3 cut(s)	114, 286, 544
NlaIV	GGNNCC	7 cut(s)	148, 219, 234, 310, 383, 450, 549
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	596
PasI	CCCWGGG	1 cut(s)	346
PluTI	GGCGCC	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	179
Psp1406I	AACGTT	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	345, 370
PspGI	CCWGG	2 cut(s)	345, 370
PspN4I	GGNNCC	7 cut(s)	148, 219, 234, 310, 383, 450, 549
PspPI	GGNCC	1 cut(s)	381
PsrI	GAACNNNNNNTAC	2 cut(s)	600, 632
PstI	CTGCAG	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	2 cut(s)	202, 219
RsaNI	GTAC	2 cut(s)	201, 218
RseI	CAYNNNNRTG	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	402, 671
Sau3AI	GATC	3 cut(s)	511, 723, 727
Sau96I	GGNCC	1 cut(s)	381
ScrFI	CCNGG	2 cut(s)	347, 372
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	5 cut(s)	46, 263, 276, 600, 716
SfcI	CTRYAG	1 cut(s)	300
SfoI	GGCGCC	1 cut(s)	310
SgrAI	CRCCGGYG	1 cut(s)	464
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	6 cut(s)	29, 35, 115, 239, 566, 683
SspDI	GGCGCC	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	345, 370
StyI	CCWWGG	2 cut(s)	110, 408
TaaI	ACNGT	1 cut(s)	631
TaiI	ACGT	4 cut(s)	206, 397, 428, 533
TaqI	TCGA	3 cut(s)	514, 556, 726
TasI	AATT	1 cut(s)	496
TauI	GCSGC	2 cut(s)	118, 569
Tru1I	TTAA	2 cut(s)	402, 671
Tru9I	TTAA	2 cut(s)	402, 671
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	666
TspRI	CASTG	1 cut(s)	514
Vha464I	CTTAAG	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	381
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.