Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009124

Physical Location & Seq

Genomic Coordinates Forward (+)

88605819 .. 88607309

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG673700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCAGCTAAAGTGTTTTCATGGACTCCGAGTATTCCATCTCTCAGTCCTTCCAAATTACGCCAAGCTCAGCCGCAGCAGCCATGGCTGAGTCGACGCTCAAGCGCCAAGAAGAGATCTGCACTGGTCGTTCGTGCCTCCCTTCCCGAGTCTCTCATGGCTTCTTCTTCTCCTCCTCTTCTGCTACTGGAACAACTCCATCAGCAGACACCATCAAACTCGCTGTTTCTGCTGGCTGCAGACACCGCCGGTTACTCCTTGGCCAGTTACTACACTTCTTTGGGTCTCTTCGTCATCTCTGTTCCAGGCCTTTGGTCCCTCATCAAACGTTCTGTTAAATCCAAGATTGTGCAGAAGACCTTTATTGGGGAAGAGAAGAAGGCACCAAATCAAGTCGCAGGTGAAATTCTCTCCTTCTTCACTCGCAACAATTTTGTGGTCACTGATAGAGGAGAGACCATCACGTTTGAAGGCATGATGGTTCCAAGTCGAGGCCAAGCAGCATTGCTGACTTTTTGCACCTGCATCAGCCTCGCGAGTGTAGCCCTTGTTCTTACAATAACTGTTCCAGATTTCGGCAACAATTGGTTTTGGATCACCACCTTAAGTCCATTGGCGGGAGCATATTACTGGAAACGAGCCGCAAGAAAGGAGCAGATCAAGGTGAAAATGATAGTCATAGATGACGGTACACAGTCAGAGGTTGTCGTTCAAGGGGATGACCAGCAAGTAGAGCAAATGAGGAAGGAGCTTAAACTGAGTGAGAAAGGAATGGTGTATGTTAAGGGTTTATTCGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB1

Protein Analysis

267

Amino Acids

29.63

Weight (kDa)

9.72

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB1	PF12046	89 - 253	1.5e-56	Cofactor assembly of complex C subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26710
fragaria_vesca	FvH4_6g54310 FvH4_6g54310
malus_domestica	MD04G1090800.v1.1 MD17G1006700.v1.1
prunus_persica	Prupe.3G313700_v2.0.a1 Prupe.3G313700_v2.0.a1
pyrus_communis	pycom17g00230
rosa_chinensis	RchiOBHm_Chr2g0176531
rosa_laevigata	RLG00000022420
rosa_multiflora	Rmu_co8078116.1_g000001 Rmu_co8095746.1_g000001 Rmu_sc0001417.1_g000006 Rmu_sc0011904.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076330
rosa_rugosa	Rorug02G0595800 Rorug02G0595900
rosa_samantha	Rh2AG673700 Rh2BG684900 Rh2CG647900 Rh2DG698800
rosa_wichuraiana	Rw2G055260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	389, 530
Acc36I	ACCTGC	2 cut(s)	389, 530
AccB1I	GGYRCC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	94
AccII	CGCG	1 cut(s)	536
AciI	CCGC	4 cut(s)	74, 246, 617, 642
AclI	AACGTT	1 cut(s)	328
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	405
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	4 cut(s)	366, 491, 575, 617
AflII	CTTAAG	1 cut(s)	604
AgsI	TTSAA	2 cut(s)	470, 713
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	3 cut(s)	8, 68, 751
AluI	AGCT	3 cut(s)	8, 68, 751
Alw26I	GTCTC	3 cut(s)	156, 290, 449
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	261, 307, 493
ApeKI	GCWGC	5 cut(s)	5, 76, 79, 236, 500
ApoI	RAATTY	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	413, 589, 676
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	5 cut(s)	17, 88, 91, 223, 512
BccI	CCATC	5 cut(s)	46, 207, 220, 467, 472
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	156, 290, 449
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	604
BfuAI	ACCTGC	2 cut(s)	389, 530
BglII	AGATCT	1 cut(s)	116
BisI	GCNGC	7 cut(s)	6, 74, 77, 80, 237, 501, 642
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	7 cut(s)	7, 75, 78, 81, 238, 502, 643
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	3 cut(s)	317, 384, 483
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	85
BsaI	GGTCTC	2 cut(s)	290, 449
BsaJI	CCNNGG	2 cut(s)	83, 258
Bsc4I	CCNNNNNNNGG	4 cut(s)	366, 491, 575, 617
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	4 cut(s)	129, 192, 264, 635
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	83, 258
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	4 cut(s)	366, 491, 575, 617
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	4 cut(s)	58, 80, 83, 749
BseNI	ACTGG	4 cut(s)	129, 192, 264, 635
BseRI	GAGGAG	3 cut(s)	162, 165, 465
BseXI	GCAGC	5 cut(s)	17, 88, 91, 223, 512
BsgI	GTGCAG	2 cut(s)	105, 371
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	3 cut(s)	263, 309, 495
BshNI	GGYRCC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	4 cut(s)	366, 491, 575, 617
BsmAI	GTCTC	3 cut(s)	156, 290, 449
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	263, 309, 495
Bso31I	GGTCTC	2 cut(s)	290, 449
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	116, 594, 657
Bsp1720I	GCTNAGC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	83
Bsp68I	TCGCGA	1 cut(s)	536
BspACI	CCGC	4 cut(s)	74, 246, 617, 642
BspANI	GGCC	3 cut(s)	263, 309, 495
BspCNI	CTCAG	4 cut(s)	57, 81, 82, 750
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	3 cut(s)	317, 384, 483
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	2 cut(s)	389, 530
BspPI	GGATC	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	382
BspTI	CTTAAG	1 cut(s)	604
BspTNI	GGTCTC	2 cut(s)	290, 449
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	4 cut(s)	129, 192, 264, 635
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	83, 258
BssMI	GATC	3 cut(s)	116, 594, 657
BssT1I	CCWWGG	2 cut(s)	83, 258
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	3 cut(s)	565, 689, 696
Bst6I	CTCTTC	4 cut(s)	107, 183, 293, 366
BstAFI	CTTAAG	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	4 cut(s)	44, 69, 89, 758
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	1 cut(s)	536
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	3 cut(s)	119, 597, 660
BstMAI	GTCTC	3 cut(s)	156, 290, 449
BstMBI	GATC	3 cut(s)	116, 594, 657
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 85, 229, 245, 542, 733
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	5 cut(s)	17, 88, 91, 223, 512
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	263, 309, 495
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	724
BtsIMutI	CAGTG	2 cut(s)	122, 441
BtuMI	TCGCGA	1 cut(s)	536
BveI	ACCTGC	2 cut(s)	389, 530
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	315
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	690
CviAII	CATG	4 cut(s)	21, 84, 157, 475
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	4 cut(s)	44, 69, 89, 758
DpnI	GATC	3 cut(s)	118, 596, 659
DpnII	GATC	3 cut(s)	116, 594, 657
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	4 cut(s)	107, 183, 293, 366
EarI	CTCTTC	4 cut(s)	107, 183, 293, 366
Eco130I	CCWWGG	2 cut(s)	83, 258
Eco147I	AGGCCT	1 cut(s)	309
Eco31I	GGTCTC	2 cut(s)	290, 449
Eco47I	GGWCC	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	83, 258
ErhI	CCWWGG	2 cut(s)	83, 258
FaeI	CATG	4 cut(s)	24, 87, 160, 478
FaiI	YATR	7 cut(s)	22, 85, 158, 476, 625, 680, 780
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	4 cut(s)	20, 83, 156, 474
FauI	CCCGC	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	94
Fnu4HI	GCNGC	7 cut(s)	6, 74, 77, 80, 237, 501, 642
FokI	GGATG	1 cut(s)	731
Fsp4HI	GCNGC	7 cut(s)	6, 74, 77, 80, 237, 501, 642
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	7 cut(s)	6, 74, 77, 80, 237, 501, 642
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	263, 309, 495
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	4 cut(s)	24, 87, 160, 478
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HinfI	GANTC	3 cut(s)	25, 91, 149
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	3 cut(s)	413, 589, 676
Hpy166II	GTNNAC	2 cut(s)	95, 692
Hpy188I	TCNGA	2 cut(s)	30, 700
Hpy188III	TCNNGA	4 cut(s)	146, 535, 569, 796
Hpy8I	GTNNAC	2 cut(s)	95, 692
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	6 cut(s)	60, 152, 373, 424, 464, 739
HpyCH4III	ACNGT	3 cut(s)	565, 689, 696
HpyCH4IV	ACGT	2 cut(s)	328, 464
HpyCH4V	TGCA	5 cut(s)	122, 239, 352, 519, 525
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 85, 229, 245, 542, 733
HpyF3I	CTNAG	4 cut(s)	44, 69, 89, 758
HpySE526I	ACGT	2 cut(s)	328, 464
Hsp92II	CATG	4 cut(s)	24, 87, 160, 478
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	3 cut(s)	116, 594, 657
LmnI	GCTCC	3 cut(s)	620, 652, 748
Lsp1109I	GCAGC	5 cut(s)	17, 88, 91, 223, 512
LweI	GCATC	1 cut(s)	534
MaeII	ACGT	2 cut(s)	328, 464
MaeIII	GTNAC	3 cut(s)	251, 266, 439
MalI	GATC	3 cut(s)	118, 596, 659
MboI	GATC	3 cut(s)	116, 594, 657
MboII	GAAGA	9 cut(s)	124, 156, 159, 170, 280, 367, 383, 388, 409
MfeI	CAATTG	1 cut(s)	583
MflI	RGATCY	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	4 cut(s)	56, 405, 430, 583
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	3 cut(s)	19, 100, 158
MnlI	CCTC	9 cut(s)	148, 183, 186, 329, 443, 485, 542, 694, 735
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	4 cut(s)	336, 605, 753, 783
Msp20I	TGGCCA	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	604
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	6 cut(s)	79, 85, 229, 245, 542, 733
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	3 cut(s)	116, 594, 657
NlaIII	CATG	4 cut(s)	24, 87, 160, 478
NlaIV	GGNNCC	3 cut(s)	317, 384, 483
NmuCI	GTSAC	1 cut(s)	439
NruI	TCGCGA	1 cut(s)	536
PaqCI	CACCTGC	2 cut(s)	389, 530
PceI	AGGCCT	1 cut(s)	309
PkrI	GCNGC	7 cut(s)	7, 75, 78, 81, 238, 502, 643
PleI	GAGTC	3 cut(s)	19, 99, 157
PpsI	GAGTC	3 cut(s)	19, 99, 157
Psp1406I	AACGTT	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	317, 384, 483
PspPI	GGNCC	1 cut(s)	315
PsrI	GAACNNNNNNTAC	2 cut(s)	534, 566
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	116
RruI	TCGCGA	1 cut(s)	536
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
SalI	GTCGAC	1 cut(s)	93
SaqAI	TTAA	4 cut(s)	336, 605, 753, 783
SatI	GCNGC	7 cut(s)	6, 74, 77, 80, 237, 501, 642
Sau3AI	GATC	3 cut(s)	116, 594, 657
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	19, 100, 158
ScrFI	CCNGG	1 cut(s)	306
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	100, 604
SmoI	CTYRAG	2 cut(s)	100, 604
Sse9I	AATT	4 cut(s)	56, 405, 430, 583
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	4 cut(s)	74, 246, 617, 642
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	83, 258
TaaI	ACNGT	3 cut(s)	565, 689, 696
TaiI	ACGT	2 cut(s)	331, 467
TaqI	TCGA	3 cut(s)	94, 490, 795
TasI	AATT	4 cut(s)	56, 405, 430, 583
TauI	GCSGC	2 cut(s)	76, 644
Tru1I	TTAA	4 cut(s)	336, 605, 753, 783
Tru9I	TTAA	4 cut(s)	336, 605, 753, 783
TscAI	CASTG	2 cut(s)	129, 448
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	5 cut(s)	5, 76, 79, 236, 500
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	129, 448
Vha464I	CTTAAG	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.