Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009124

Physical Location & Seq

Genomic Coordinates Reverse (-)

16181890 .. 16182042

Gene Structure 153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1090800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGAGGGTTCCAAGTCGAGGTCAGGCGACATTGCTCACTTTTTGCACCTGCATCAGCCTCGTAAGCGTAGCTCTTATTCTTACCATAACTATTCCCGATTTCGGCAATAACTGGTTTTCGCTCACCACCTTAAGTCCGTTGGTGGGCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB1

Protein Analysis

51

Amino Acids

5.34

Weight (kDa)

7.83

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB1	PF12046	3 - 49	1.3e-12	Cofactor assembly of complex C subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26710
fragaria_vesca	FvH4_6g54310 FvH4_6g54310
malus_domestica	MD04G1090800.v1.1 MD17G1006700.v1.1
prunus_persica	Prupe.3G313700_v2.0.a1 Prupe.3G313700_v2.0.a1
pyrus_communis	pycom17g00230
rosa_chinensis	RchiOBHm_Chr2g0176531
rosa_laevigata	RLG00000022420
rosa_multiflora	Rmu_co8078116.1_g000001 Rmu_co8095746.1_g000001 Rmu_sc0001417.1_g000006 Rmu_sc0011904.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076330
rosa_rugosa	Rorug02G0595800 Rorug02G0595900
rosa_samantha	Rh2AG673700 Rh2BG684900 Rh2CG647900 Rh2DG698800
rosa_wichuraiana	Rw2G055260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	17, 101, 143
AflII	CTTAAG	1 cut(s)	130
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BfoI	RGCGCY	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	9
BmsI	GCATC	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 101, 143
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	3 cut(s)	17, 101, 143
BseMI	GCAATG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	17, 101, 143
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	56
BspTI	CTTAAG	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	116
BstAFI	CTTAAG	1 cut(s)	130
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	56
CfoI	GCGC	1 cut(s)	149
CviJI	RGCY	2 cut(s)	57, 71
CviKI_1	RGCY	2 cut(s)	57, 71
FaiI	YATR	1 cut(s)	86
GlaI	GCGC	1 cut(s)	148
HaeII	RGCGCY	1 cut(s)	150
HhaI	GCGC	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HphI	GGTGA	1 cut(s)	115
Hpy188III	TCNNGA	1 cut(s)	95
HpyCH4V	TGCA	2 cut(s)	45, 51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HspAI	GCGC	1 cut(s)	147
LpnPI	CCDG	3 cut(s)	8, 61, 97
LweI	GCATC	1 cut(s)	60
MnlI	CCTC	2 cut(s)	11, 68
MseI	TTAA	2 cut(s)	131, 151
MspCI	CTTAAG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	63
NlaIV	GGNNCC	1 cut(s)	9
PaqCI	CACCTGC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	131, 151
SetI	ASST	4 cut(s)	22, 50, 73, 131
SfaNI	GCATC	1 cut(s)	60
SgeI	CNNG	7 cut(s)	24, 29, 35, 60, 71, 107, 124
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
TaqI	TCGA	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	131, 151
Tru9I	TTAA	2 cut(s)	131, 151
TspGWI	ACGGA	1 cut(s)	126
Vha464I	CTTAAG	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.