Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009124

Physical Location & Seq

Genomic Coordinates Forward (+)

27140379 .. 27142319

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G313700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCAGCTAAAGTGTTATCGTCCCCTCCGCACCCACAGCTAAACCCAAATCCTCACAGTTATCCATCATCTCGTCCTCTGAAAATACTCCAAGCCAAAGCCACGAGAGATGTAACCCAGAAGCAGAAGCAGCCATGGTGGCTGCTGAGTCAAGTTTCCTCAAGAACAAGAGCCAACAAGAAGAGACAGCTGCAGGTTGTTGGTGCCTTGAGCTCCTCCCTCCACGACTGCGAGTCTCTTGTTACTTCCTCTCTACTAGTCTTGCTGCAGGAACCACCATCATCTTCATCATCATCATTGTTTGTGGTTGCTGCAGACAGCGTGGGTTATTCCTTGGCCAGTTACTACACTTCCTTGGGTCTCTTCGTCCTCTCTGTTCCAGGCCTTTGGTCCCTCATCAAACGTTCTGTTAAATCCAAGGTTGTGCAGAAGACATTTATAGGTGAAGAGAAGAAGGCACCGAGTCAGGTCGCAGGTGAAATTTTGTCATTCTTCACTCGAAACAATTTTGTGGTCACTGATAGAGGAGAGACCATCACGTTTGAAGGCATGATGGTTCCAAGTCGAGGCCAAGCTGCATTGCTTACTTTCTGCACCTGCATCAGCCTGGCAAGCGTAGCTCTTGTCCTTACAATAACTGTTCCAGATGTCGGCAATAATTGGTTTTGGATCACCACCTTAAGTCCCTTGGCGGGAGCATATTACTGGAAACGGGCATCCAGAAAGGAGCAGATCAAGGTCAAAATGATGGTCATAGATGACGACGGTGCACAGTCAGAGATCATCGTTCAAGGGGATGACCAGCAAGTAGAGCAAATGAGAAAGGAGCTTCAACTCAGTGAGAAAGGCATGGTGTATGTTAAGGGCATATTCGAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB1

Protein Analysis

294

Amino Acids

32.4

Weight (kDa)

9.52

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26710
fragaria_vesca	FvH4_6g54310 FvH4_6g54310
malus_domestica	MD04G1090800.v1.1 MD17G1006700.v1.1
prunus_persica	Prupe.3G313700_v2.0.a1 Prupe.3G313700_v2.0.a1
pyrus_communis	pycom17g00230
rosa_chinensis	RchiOBHm_Chr2g0176531
rosa_laevigata	RLG00000022420
rosa_multiflora	Rmu_co8078116.1_g000001 Rmu_co8095746.1_g000001 Rmu_sc0001417.1_g000006 Rmu_sc0011904.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076330
rosa_rugosa	Rorug02G0595800 Rorug02G0595900
rosa_samantha	Rh2AG673700 Rh2BG684900 Rh2CG647900 Rh2DG698800
rosa_wichuraiana	Rw2G055260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	464, 605
Acc36I	ACCTGC	3 cut(s)	184, 464, 605
AccB1I	GGYRCC	2 cut(s)	203, 457
AciI	CCGC	2 cut(s)	29, 692
AclI	AACGTT	1 cut(s)	403
AclWI	GGATC	1 cut(s)	677
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	480
AfiI	CCNNNNNNNGG	3 cut(s)	566, 650, 692
AflII	CTTAAG	1 cut(s)	679
AgsI	TTSAA	3 cut(s)	545, 791, 833
AhdI	GACNNNNNGTC	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	379, 606
AluBI	AGCT	7 cut(s)	8, 40, 190, 213, 575, 620, 829
AluI	AGCT	7 cut(s)	8, 40, 190, 213, 575, 620, 829
Alw21I	GWGCWC	2 cut(s)	215, 772
Alw26I	GTCTC	4 cut(s)	178, 240, 365, 524
Alw44I	GTGCAC	1 cut(s)	768
AlwI	GGATC	1 cut(s)	677
AoxI	GGCC	3 cut(s)	336, 382, 568
ApaLI	GTGCAC	1 cut(s)	768
ApeKI	GCWGC	7 cut(s)	5, 130, 142, 190, 265, 311, 575
ApoI	RAATTY	1 cut(s)	480
ArsI	GACNNNNNNTTYG	2 cut(s)	735, 767
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	3 cut(s)	455, 488, 664
AvaII	GGWCC	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	772
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	203, 457
BanII	GRGCYC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	2 cut(s)	215, 772
BbvI	GCAGC	7 cut(s)	17, 129, 142, 177, 252, 298, 562
BccI	CCATC	5 cut(s)	73, 286, 542, 547, 742
BciT130I	CCWGG	2 cut(s)	381, 608
BcoDI	GTCTC	4 cut(s)	178, 240, 365, 524
BcuI	ACTAGT	1 cut(s)	256
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	3 cut(s)	191, 266, 312
BfrI	CTTAAG	1 cut(s)	679
BfuAI	ACCTGC	3 cut(s)	184, 464, 605
BglI	GCCNNNNNGGC	1 cut(s)	139
BisI	GCNGC	7 cut(s)	6, 131, 143, 191, 266, 312, 576
BlsI	GCNGC	7 cut(s)	7, 132, 144, 192, 267, 313, 577
Bme1390I	CCNGG	2 cut(s)	381, 608
Bme18I	GGWCC	1 cut(s)	390
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	5 cut(s)	205, 273, 392, 459, 558
BmrFI	CCNGG	2 cut(s)	381, 608
BmsI	GCATC	2 cut(s)	609, 725
BpiI	GAAGAC	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	145, 229
BsaI	GGTCTC	2 cut(s)	365, 524
BsaJI	CCNNGG	5 cut(s)	134, 333, 354, 417, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	566, 650, 692
Bse1I	ACTGG	2 cut(s)	339, 710
Bse3DI	GCAATG	1 cut(s)	578
BseBI	CCWGG	2 cut(s)	381, 608
BseDI	CCNNGG	5 cut(s)	134, 333, 354, 417, 687
BseGI	GGATG	2 cut(s)	716, 802
BseLI	CCNNNNNNNGG	3 cut(s)	566, 650, 692
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	2 cut(s)	137, 850
BseNI	ACTGG	2 cut(s)	339, 710
BseRI	GAGGAG	2 cut(s)	205, 540
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	7 cut(s)	17, 129, 142, 177, 252, 298, 562
BsgI	GTGCAG	2 cut(s)	446, 577
BshFI	GGCC	3 cut(s)	338, 384, 570
BshNI	GGYRCC	2 cut(s)	203, 457
BsiHKAI	GWGCWC	2 cut(s)	215, 772
BslFI	GGGAC	3 cut(s)	7, 376, 669
BslI	CCNNNNNNNGG	3 cut(s)	566, 650, 692
BsmAI	GTCTC	4 cut(s)	178, 240, 365, 524
BsmFI	GGGAC	3 cut(s)	7, 376, 669
BsnI	GGCC	3 cut(s)	338, 384, 570
Bso31I	GGTCTC	2 cut(s)	365, 524
Bsp1286I	GDGCHC	2 cut(s)	215, 772
Bsp143I	GATC	3 cut(s)	669, 732, 780
Bsp19I	CCATGG	1 cut(s)	134
BspACI	CCGC	2 cut(s)	29, 692
BspANI	GGCC	3 cut(s)	338, 384, 570
BspCNI	CTCAG	2 cut(s)	138, 849
BspLI	GGNNCC	5 cut(s)	205, 273, 392, 459, 558
BspMAI	CTGCAG	3 cut(s)	195, 270, 316
BspMI	ACCTGC	3 cut(s)	184, 464, 605
BspPI	GGATC	1 cut(s)	677
BspT107I	GGYRCC	2 cut(s)	203, 457
BspTI	CTTAAG	1 cut(s)	679
BspTNI	GGTCTC	2 cut(s)	365, 524
BsrDI	GCAATG	1 cut(s)	578
BsrI	ACTGG	2 cut(s)	339, 710
BssECI	CCNNGG	5 cut(s)	134, 333, 354, 417, 687
BssMI	GATC	3 cut(s)	669, 732, 780
BssSI	CACGAG	1 cut(s)	103
BssT1I	CCWWGG	5 cut(s)	134, 333, 354, 417, 687
Bst2BI	CACGAG	1 cut(s)	103
Bst2UI	CCWGG	2 cut(s)	381, 608
Bst4CI	ACNGT	4 cut(s)	59, 640, 767, 774
Bst6I	CTCTTC	3 cut(s)	176, 368, 441
BstAFI	CTTAAG	1 cut(s)	679
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	2 cut(s)	146, 836
BstDSI	CCRYGG	1 cut(s)	134
BstF5I	GGATG	2 cut(s)	716, 802
BstKTI	GATC	3 cut(s)	672, 735, 783
BstMAI	GTCTC	4 cut(s)	178, 240, 365, 524
BstMBI	GATC	3 cut(s)	669, 732, 780
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 130, 139, 612, 617, 811
BstNI	CCWGG	2 cut(s)	381, 608
BstSCI	CCNGG	2 cut(s)	379, 606
BstSFI	CTRYAG	3 cut(s)	191, 266, 312
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	7 cut(s)	17, 129, 142, 177, 252, 298, 562
BstV2I	GAAGAC	1 cut(s)	437
BstXI	CCANNNNNNTGG	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	338, 384, 570
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	716, 802
BtsIMutI	CAGTG	2 cut(s)	516, 844
BveI	ACCTGC	3 cut(s)	184, 464, 605
Cac8I	GCNNGC	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	390
CviAII	CATG	3 cut(s)	135, 550, 850
DdeI	CTNAG	2 cut(s)	146, 836
DpnI	GATC	3 cut(s)	671, 734, 782
DpnII	GATC	3 cut(s)	669, 732, 780
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	3 cut(s)	176, 368, 441
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	3 cut(s)	176, 368, 441
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	5 cut(s)	134, 333, 354, 417, 687
Eco147I	AGGCCT	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	2 cut(s)	365, 524
Eco47I	GGWCC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	379, 606
EcoT14I	CCWWGG	5 cut(s)	134, 333, 354, 417, 687
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	5 cut(s)	134, 333, 354, 417, 687
FaeI	CATG	3 cut(s)	138, 553, 853
FaiI	YATR	8 cut(s)	136, 440, 551, 700, 755, 851, 858, 869
FaqI	GGGAC	3 cut(s)	7, 376, 669
FatI	CATG	3 cut(s)	134, 549, 849
FauI	CCCGC	1 cut(s)	685
Fnu4HI	GCNGC	7 cut(s)	6, 131, 143, 191, 266, 312, 576
FokI	GGATG	2 cut(s)	703, 809
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	7 cut(s)	6, 131, 143, 191, 266, 312, 576
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	7 cut(s)	6, 131, 143, 191, 266, 312, 576
HaeIII	GGCC	3 cut(s)	338, 384, 570
Hin1II	CATG	3 cut(s)	138, 553, 853
HinfI	GANTC	3 cut(s)	148, 233, 463
HphI	GGTGA	3 cut(s)	455, 488, 664
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188I	TCNGA	2 cut(s)	81, 778
Hpy188III	TCNNGA	4 cut(s)	162, 644, 720, 874
Hpy8I	GTNNAC	1 cut(s)	770
Hpy99I	CGWCG	1 cut(s)	767
HpyAV	CCTTC	2 cut(s)	448, 539
HpyCH4III	ACNGT	4 cut(s)	59, 640, 767, 774
HpyCH4IV	ACGT	2 cut(s)	403, 539
HpyCH4V	TGCA	8 cut(s)	193, 268, 314, 427, 578, 594, 600, 770
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 130, 139, 612, 617, 811
HpyF3I	CTNAG	2 cut(s)	146, 836
HpySE526I	ACGT	2 cut(s)	403, 539
Hsp92II	CATG	3 cut(s)	138, 553, 853
Kzo9I	GATC	3 cut(s)	669, 732, 780
LmnI	GCTCC	4 cut(s)	218, 695, 727, 826
Lsp1109I	GCAGC	7 cut(s)	17, 129, 142, 177, 252, 298, 562
LweI	GCATC	2 cut(s)	609, 725
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	2 cut(s)	403, 539
MaeIII	GTNAC	4 cut(s)	112, 241, 341, 514
MalI	GATC	3 cut(s)	671, 734, 782
MboI	GATC	3 cut(s)	669, 732, 780
MboII	GAAGA	7 cut(s)	193, 276, 355, 442, 458, 463, 484
MhlI	GDGCHC	2 cut(s)	215, 772
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	3 cut(s)	480, 505, 658
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	3 cut(s)	157, 242, 472
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	3 cut(s)	411, 680, 861
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	190
MspCI	CTTAAG	1 cut(s)	679
MspR9I	CCNGG	2 cut(s)	381, 608
MvaI	CCWGG	2 cut(s)	381, 608
MwoI	GCNNNNNNNGC	6 cut(s)	37, 130, 139, 612, 617, 811
NcoI	CCATGG	1 cut(s)	134
NdeII	GATC	3 cut(s)	669, 732, 780
NlaIII	CATG	3 cut(s)	138, 553, 853
NlaIV	GGNNCC	5 cut(s)	205, 273, 392, 459, 558
NmuCI	GTSAC	1 cut(s)	514
PaqCI	CACCTGC	2 cut(s)	464, 605
PceI	AGGCCT	1 cut(s)	384
PkrI	GCNGC	7 cut(s)	7, 132, 144, 192, 267, 313, 577
PleI	GAGTC	3 cut(s)	156, 241, 471
PpsI	GAGTC	3 cut(s)	156, 241, 471
Psp124BI	GAGCTC	1 cut(s)	215
Psp1406I	AACGTT	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	379, 606
PspGI	CCWGG	2 cut(s)	379, 606
PspN4I	GGNNCC	5 cut(s)	205, 273, 392, 459, 558
PspPI	GGNCC	1 cut(s)	390
PstI	CTGCAG	3 cut(s)	195, 270, 316
PvuII	CAGCTG	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	215
SaqAI	TTAA	3 cut(s)	411, 680, 861
SatI	GCNGC	7 cut(s)	6, 131, 143, 191, 266, 312, 576
Sau3AI	GATC	3 cut(s)	669, 732, 780
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	3 cut(s)	157, 242, 472
ScrFI	CCNGG	2 cut(s)	381, 608
SduI	GDGCHC	2 cut(s)	215, 772
SfaNI	GCATC	2 cut(s)	609, 725
SfcI	CTRYAG	3 cut(s)	191, 266, 312
SinI	GGWCC	1 cut(s)	390
SmlI	CTYRAG	3 cut(s)	160, 208, 679
SmoI	CTYRAG	3 cut(s)	160, 208, 679
SpeI	ACTAGT	1 cut(s)	256
Sse9I	AATT	3 cut(s)	480, 505, 658
SseBI	AGGCCT	1 cut(s)	384
SsiI	CCGC	2 cut(s)	29, 692
SspMI	CTAG	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	215
StuI	AGGCCT	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	379, 606
StyI	CCWWGG	5 cut(s)	134, 333, 354, 417, 687
TaaI	ACNGT	4 cut(s)	59, 640, 767, 774
TaiI	ACGT	2 cut(s)	406, 542
TaqI	TCGA	3 cut(s)	499, 565, 873
TasI	AATT	3 cut(s)	480, 505, 658
Tru1I	TTAA	3 cut(s)	411, 680, 861
Tru9I	TTAA	3 cut(s)	411, 680, 861
TscAI	CASTG	2 cut(s)	523, 844
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	7 cut(s)	5, 130, 142, 190, 265, 311, 575
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	2 cut(s)	523, 844
Vha464I	CTTAAG	1 cut(s)	679
VneI	GTGCAC	1 cut(s)	768
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	480
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.