Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8095746.1

Orthogroup ID

OG0009124

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 428

Gene Structure 428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8095746.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggcagctaaagtgttttcatggactccgagtattccatctctcagtccttccaaattacgccaagctcagccgcagcagccatggctgagtcgacgctcaagcgccaagaagagatctgcactggtcgttcgtgcctcccttcccgagtctctcatggcttcttctcctcctcctcttctgctactggaacaactccatcagcagacaccatcaacctcgctgtttctgctggctgcagacaccgccggttactccttggccagttactacacttctttgggtctcttcgtcatctctgttccaggcctttggtccctcatcaaacgttctgttaaatccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB1

Protein Analysis

115

Amino Acids

12.54

Weight (kDa)

10.8

Isoelectric Point (pI)

73.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26710
fragaria_vesca	FvH4_6g54310 FvH4_6g54310
malus_domestica	MD04G1090800.v1.1 MD17G1006700.v1.1
prunus_persica	Prupe.3G313700_v2.0.a1 Prupe.3G313700_v2.0.a1
pyrus_communis	pycom17g00230
rosa_chinensis	RchiOBHm_Chr2g0176531
rosa_laevigata	RLG00000022420
rosa_multiflora	Rmu_co8078116.1_g000001 Rmu_co8095746.1_g000001 Rmu_sc0001417.1_g000006 Rmu_sc0011904.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076330
rosa_rugosa	Rorug02G0595800 Rorug02G0595900
rosa_samantha	Rh2AG673700 Rh2BG684900 Rh2CG647900 Rh2DG698800
rosa_wichuraiana	Rw2G055260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	94
AciI	CCGC	2 cut(s)	74, 246
AclI	AACGTT	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	261
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	8, 68
AluI	AGCT	2 cut(s)	8, 68
Alw26I	GTCTC	2 cut(s)	156, 290
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	261, 307
ApeKI	GCWGC	4 cut(s)	5, 76, 79, 236
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	315
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	263
BbvI	GCAGC	4 cut(s)	17, 88, 91, 223
BccI	CCATC	3 cut(s)	46, 207, 220
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	156, 290
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	108
BglII	AGATCT	1 cut(s)	116
BisI	GCNGC	5 cut(s)	6, 74, 77, 80, 237
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	5 cut(s)	7, 75, 78, 81, 238
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	85
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	83, 258
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	3 cut(s)	129, 192, 264
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	83, 258
BseMII	CTCAG	3 cut(s)	58, 80, 83
BseNI	ACTGG	3 cut(s)	129, 192, 264
BseRI	GAGGAG	3 cut(s)	159, 162, 165
BseXI	GCAGC	4 cut(s)	17, 88, 91, 223
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	263, 309
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	301
BsmAI	GTCTC	2 cut(s)	156, 290
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	263, 309
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	116
Bsp1720I	GCTNAGC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	2 cut(s)	74, 246
BspANI	GGCC	2 cut(s)	263, 309
BspCNI	CTCAG	3 cut(s)	57, 81, 82
BspLI	GGNNCC	1 cut(s)	317
BspMAI	CTGCAG	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	129, 192, 264
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	83, 258
BssMI	GATC	1 cut(s)	116
BssT1I	CCWWGG	2 cut(s)	83, 258
Bst2UI	CCWGG	1 cut(s)	306
Bst6I	CTCTTC	3 cut(s)	107, 183, 293
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	44, 69, 89
BstDSI	CCRYGG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	2 cut(s)	156, 290
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 85, 229, 245
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	4 cut(s)	17, 88, 91, 223
BstX2I	RGATCY	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	263, 309
BtgI	CCRYGG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	315
CseI	GACGC	1 cut(s)	105
CviAII	CATG	3 cut(s)	21, 84, 157
CviJI	RGCY	9 cut(s)	8, 68, 73, 82, 88, 161, 236, 263, 309
CviKI_1	RGCY	9 cut(s)	8, 68, 73, 82, 88, 161, 236, 263, 309
DdeI	CTNAG	3 cut(s)	44, 69, 89
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	3 cut(s)	107, 183, 293
EarI	CTCTTC	3 cut(s)	107, 183, 293
Eco130I	CCWWGG	2 cut(s)	83, 258
Eco147I	AGGCCT	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	83, 258
ErhI	CCWWGG	2 cut(s)	83, 258
FaeI	CATG	3 cut(s)	24, 87, 160
FaiI	YATR	3 cut(s)	22, 85, 158
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	3 cut(s)	20, 83, 156
FblI	GTMKAC	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	6, 74, 77, 80, 237
Fsp4HI	GCNGC	5 cut(s)	6, 74, 77, 80, 237
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	5 cut(s)	6, 74, 77, 80, 237
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	263, 309
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	24, 87, 160
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HinfI	GANTC	3 cut(s)	25, 91, 149
HpaII	CCGG	1 cut(s)	249
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	60, 152
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	122, 239
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 85, 229, 245
HpyF3I	CTNAG	3 cut(s)	44, 69, 89
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	3 cut(s)	24, 87, 160
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	116
LpnPI	CCDG	7 cut(s)	110, 173, 218, 262, 277, 291, 318
Lsp1109I	GCAGC	4 cut(s)	17, 88, 91, 223
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	251, 266
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	4 cut(s)	124, 156, 170, 280
MflI	RGATCY	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	1 cut(s)	56
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	3 cut(s)	19, 100, 158
MnlI	CCTC	6 cut(s)	148, 180, 183, 186, 229, 329
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	263
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	4 cut(s)	79, 85, 229, 245
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	116
NlaIII	CATG	3 cut(s)	24, 87, 160
NlaIV	GGNNCC	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	309
PkrI	GCNGC	5 cut(s)	7, 75, 78, 81, 238
PleI	GAGTC	3 cut(s)	19, 99, 157
PpsI	GAGTC	3 cut(s)	19, 99, 157
Psp1406I	AACGTT	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	5 cut(s)	6, 74, 77, 80, 237
Sau3AI	GATC	1 cut(s)	116
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	19, 100, 158
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	4 cut(s)	10, 70, 221, 331
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	1 cut(s)	56
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	2 cut(s)	74, 246
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	83, 258
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	94
TasI	AATT	1 cut(s)	56
TauI	GCSGC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	4 cut(s)	5, 76, 79, 236
TspDTI	ATGAA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.