Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009124

Physical Location & Seq

Genomic Coordinates Forward (+)

71693560 .. 71694060

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0595800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCGCCAGACACTAAAACAGCCCTCCCTACCAGCAACACCAATTGCCACCCTCATCCTACAGATAGTGTTCAGTTTACTATTAGCTTGCCGTCCATTGTGTTCATTAACCTCACAATAACAACCTTCACAACCATGTACCGCGCGCAGCAGCACCACGACACCACCTTGCTAGCTTTCCTCGCATTCGTCTACGCCTCTTATTTCATCCTCCATAACTGTGTGCAAGTGTACAGTCGACTTCCCAAGGGCGAAAAATCGGCGAAGAAAGAGCTGCTGAGGTTCACCCTGTGGTTTTTGCCAACACTAGTCCTGCTGGGATTTGCAGCTGAGTTTGGGACTTTCATGAACGTGACTGTGGTTGTGCTTATGTACTGTCTCGCCATTGCTAGCAGCTTGTTGCTCTTCTATGTCCACTACATTTATGATGATCAAAAGGGACATGATCAGATGAGTAACAGCAAGCATGATCATGTACCAATTGCCCAGAACATTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB1

Protein Analysis

166

Amino Acids

18.83

Weight (kDa)

7.12

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF6490	PF20100	38 - 140	2e-07	Family of unknown function (DUF6490)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26710
fragaria_vesca	FvH4_6g54310 FvH4_6g54310
malus_domestica	MD04G1090800.v1.1 MD17G1006700.v1.1
prunus_persica	Prupe.3G313700_v2.0.a1 Prupe.3G313700_v2.0.a1
pyrus_communis	pycom17g00230
rosa_chinensis	RchiOBHm_Chr2g0176531
rosa_laevigata	RLG00000022420
rosa_multiflora	Rmu_co8078116.1_g000001 Rmu_co8095746.1_g000001 Rmu_sc0001417.1_g000006 Rmu_sc0011904.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076330
rosa_rugosa	Rorug02G0595800 Rorug02G0595900
rosa_samantha	Rh2AG673700 Rh2BG684900 Rh2CG647900 Rh2DG698800
rosa_wichuraiana	Rw2G055260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	2 cut(s)	192, 238
AccII	CGCG	2 cut(s)	144, 146
AciI	CCGC	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	291
AfaI	GTAC	4 cut(s)	140, 233, 374, 477
AhlI	ACTAGT	1 cut(s)	307
AluBI	AGCT	5 cut(s)	87, 176, 274, 329, 396
AluI	AGCT	5 cut(s)	87, 176, 274, 329, 396
Alw26I	GTCTC	1 cut(s)	383
ApeKI	GCWGC	5 cut(s)	148, 151, 274, 326, 393
AspLEI	GCGC	3 cut(s)	7, 146, 148
AsuHPI	GGTGA	1 cut(s)	277
AsuNHI	GCTAGC	2 cut(s)	172, 389
BanI	GGYRCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	5 cut(s)	160, 163, 261, 338, 405
BceAI	ACGGC	1 cut(s)	76
BclI	TGATCA	3 cut(s)	430, 445, 469
BcoDI	GTCTC	1 cut(s)	383
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	3 cut(s)	173, 308, 390
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	5 cut(s)	149, 152, 275, 327, 394
BlsI	GCNGC	5 cut(s)	150, 153, 276, 328, 395
BmiI	GGNNCC	1 cut(s)	6
BmtI	GCTAGC	2 cut(s)	176, 393
Bpu10I	CCTNAGC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	55, 207
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	269, 321
BsePI	GCGCGC	1 cut(s)	144
BseXI	GCAGC	5 cut(s)	160, 163, 261, 338, 405
BseYI	CCCAGC	1 cut(s)	316
Bsh1236I	CGCG	2 cut(s)	144, 146
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	2 cut(s)	352, 453
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	2 cut(s)	352, 453
BsmI	GAATGC	1 cut(s)	185
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	430, 445, 469
BspACI	CCGC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	270, 322
BspFNI	CGCG	2 cut(s)	144, 146
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	2 cut(s)	176, 393
BspQI	GCTCTTC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	246
BssHII	GCGCGC	1 cut(s)	144
BssMI	GATC	3 cut(s)	430, 445, 469
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	4 cut(s)	221, 236, 358, 377
Bst6I	CTCTTC	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	5 cut(s)	89, 146, 174, 391, 464
BstDEI	CTNAG	2 cut(s)	278, 330
BstF5I	GGATG	2 cut(s)	55, 207
BstFNI	CGCG	2 cut(s)	144, 146
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 146, 148
BstKTI	GATC	3 cut(s)	433, 448, 472
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	430, 445, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	2 cut(s)	144, 146
BstV1I	GCAGC	5 cut(s)	160, 163, 261, 338, 405
BtsCI	GGATG	2 cut(s)	55, 207
Cac8I	GCNNGC	5 cut(s)	89, 146, 174, 391, 464
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	3 cut(s)	7, 146, 148
Csp6I	GTAC	4 cut(s)	139, 232, 373, 476
CviAII	CATG	5 cut(s)	136, 346, 443, 467, 473
CviJI	RGCY	6 cut(s)	23, 87, 176, 274, 329, 396
CviKI_1	RGCY	6 cut(s)	23, 87, 176, 274, 329, 396
CviQI	GTAC	4 cut(s)	139, 232, 373, 476
DdeI	CTNAG	2 cut(s)	278, 330
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	432, 447, 471
DpnII	GATC	3 cut(s)	430, 445, 469
DraIII	CACNNNGTG	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	5 cut(s)	139, 349, 446, 470, 476
FaiI	YATR	9 cut(s)	137, 216, 347, 371, 411, 426, 444, 468, 474
FaqI	GGGAC	2 cut(s)	352, 453
FatI	CATG	5 cut(s)	135, 345, 442, 466, 472
FbaI	TGATCA	3 cut(s)	430, 445, 469
FblI	GTMKAC	2 cut(s)	192, 238
Fnu4HI	GCNGC	5 cut(s)	149, 152, 275, 327, 394
FokI	GGATG	2 cut(s)	42, 194
Fsp4HI	GCNGC	5 cut(s)	149, 152, 275, 327, 394
FspBI	CTAG	3 cut(s)	173, 308, 390
GlaI	GCGC	3 cut(s)	6, 145, 147
GluI	GCNGC	5 cut(s)	149, 152, 275, 327, 394
GsaI	CCCAGC	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	8
HhaI	GCGC	3 cut(s)	7, 146, 148
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	139, 349, 446, 470, 476
Hin6I	GCGC	3 cut(s)	5, 144, 146
HinP1I	GCGC	3 cut(s)	5, 144, 146
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	6 cut(s)	78, 193, 232, 239, 285, 415
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	6 cut(s)	78, 193, 232, 239, 285, 415
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	4 cut(s)	221, 236, 358, 377
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	226, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	278, 330
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	139, 349, 446, 470, 476
HspAI	GCGC	3 cut(s)	5, 144, 146
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	3 cut(s)	430, 445, 469
Kzo9I	GATC	3 cut(s)	430, 445, 469
LguI	GCTCTTC	1 cut(s)	410
LpnPI	CCDG	5 cut(s)	21, 46, 302, 302, 326
Lsp1109I	GCAGC	5 cut(s)	160, 163, 261, 338, 405
MaeI	CTAG	3 cut(s)	173, 308, 390
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	352, 455
MalI	GATC	3 cut(s)	432, 447, 471
MboI	GATC	3 cut(s)	430, 445, 469
MboII	GAAGA	2 cut(s)	277, 397
MfeI	CAATTG	2 cut(s)	43, 480
MluCI	AATT	2 cut(s)	43, 480
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	7 cut(s)	35, 63, 122, 191, 208, 221, 273
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	4 cut(s)	134, 219, 350, 471
MspA1I	CMGCKG	1 cut(s)	329
MunI	CAATTG	2 cut(s)	43, 480
Mva1269I	GAATGC	1 cut(s)	185
MvnI	CGCG	2 cut(s)	144, 146
MwoI	GCNNNNNNNGC	1 cut(s)	182
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	430, 445, 469
NheI	GCTAGC	2 cut(s)	172, 389
NlaIII	CATG	5 cut(s)	139, 349, 446, 470, 476
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	352
PagI	TCATGA	1 cut(s)	345
PauI	GCGCGC	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	410
PctI	GAATGC	1 cut(s)	185
PkrI	GCNGC	5 cut(s)	150, 153, 276, 328, 395
PluTI	GGCGCC	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	6
PteI	GCGCGC	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	4 cut(s)	140, 233, 374, 477
RsaNI	GTAC	4 cut(s)	139, 232, 373, 476
RseI	CAYNNNNRTG	4 cut(s)	134, 219, 350, 471
SalI	GTCGAC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	5 cut(s)	149, 152, 275, 327, 394
Sau3AI	GATC	3 cut(s)	430, 445, 469
SfcI	CTRYAG	1 cut(s)	60
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	4 cut(s)	134, 219, 350, 471
SpeI	ACTAGT	1 cut(s)	307
Sse9I	AATT	2 cut(s)	43, 480
SsiI	CCGC	1 cut(s)	142
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	3 cut(s)	173, 308, 390
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	4 cut(s)	221, 236, 358, 377
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	238
TasI	AATT	2 cut(s)	43, 480
TatI	WGTACW	2 cut(s)	231, 372
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	5 cut(s)	148, 151, 274, 326, 393
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	4 cut(s)	94, 196, 334, 362
XmiI	GTMKAC	2 cut(s)	192, 238
XspI	CTAG	3 cut(s)	173, 308, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.