Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8078116.1

Orthogroup ID

OG0009124

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 408

Gene Structure 407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8078116.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgatggttccaagtcgaggccaagcagcactgctgaccttttgcacctgcatcagcctcgcaagtgtagcccttgttcttacaataactgttccagatttcggcaacaattggttttggatcaccaccttaagtccattggcgggagcatattactggaaacgagccgcaagaaaggagcagatcaaggtgaaaatgattgtcatagatgacggtacacagtcagaggttgtcgttcaaggggatgaccagcaagtagagcaaatgaggaaggagcttaaactgagtgagaaaggaatggtgtatgttaagggtctattcgagaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCB1

Protein Analysis

109

Amino Acids

12.29

Weight (kDa)

8.62

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26710
fragaria_vesca	FvH4_6g54310 FvH4_6g54310
malus_domestica	MD04G1090800.v1.1 MD17G1006700.v1.1
prunus_persica	Prupe.3G313700_v2.0.a1 Prupe.3G313700_v2.0.a1
pyrus_communis	pycom17g00230
rosa_chinensis	RchiOBHm_Chr2g0176531
rosa_laevigata	RLG00000022420
rosa_multiflora	Rmu_co8078116.1_g000001 Rmu_co8095746.1_g000001 Rmu_sc0001417.1_g000006 Rmu_sc0011904.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076330
rosa_rugosa	Rorug02G0595800 Rorug02G0595900
rosa_samantha	Rh2AG673700 Rh2BG684900 Rh2CG647900 Rh2DG698800
rosa_wichuraiana	Rw2G055260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	56
AciI	CCGC	2 cut(s)	143, 168
AclWI	GGATC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	3 cut(s)	17, 101, 143
AflII	CTTAAG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	115, 202
BbvI	GCAGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BfrI	CTTAAG	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	27, 168
BlsI	GCNGC	2 cut(s)	28, 169
BmiI	GGNNCC	1 cut(s)	9
BmsI	GCATC	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 101, 143
Bse1I	ACTGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	3 cut(s)	17, 101, 143
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	17, 101, 143
BsnI	GGCC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	120, 183
BspACI	CCGC	2 cut(s)	143, 168
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	120, 183
Bst4CI	ACNGT	3 cut(s)	91, 215, 222
BstAFI	CTTAAG	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	123, 186
BstMBI	GATC	2 cut(s)	120, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 259
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	216
CviJI	RGCY	5 cut(s)	21, 57, 71, 167, 277
CviKI_1	RGCY	5 cut(s)	21, 57, 71, 167, 277
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	2 cut(s)	122, 185
DpnII	GATC	2 cut(s)	120, 183
FaiI	YATR	3 cut(s)	151, 206, 306
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	27, 168
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	27, 168
GluI	GCNGC	2 cut(s)	27, 168
HaeIII	GGCC	1 cut(s)	21
HphI	GGTGA	2 cut(s)	115, 202
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	2 cut(s)	95, 322
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	3 cut(s)	91, 215, 222
HpyCH4V	TGCA	2 cut(s)	45, 51
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 259
HpyF3I	CTNAG	1 cut(s)	284
Kzo9I	GATC	2 cut(s)	120, 183
LmnI	GCTCC	3 cut(s)	146, 178, 274
LpnPI	CCDG	4 cut(s)	61, 108, 142, 263
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	60
MalI	GATC	2 cut(s)	122, 185
MboI	GATC	2 cut(s)	120, 183
MfeI	CAATTG	1 cut(s)	109
MluCI	AATT	1 cut(s)	109
MnlI	CCTC	4 cut(s)	11, 68, 220, 261
MseI	TTAA	3 cut(s)	131, 279, 309
MspCI	CTTAAG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	68, 259
NdeII	GATC	2 cut(s)	120, 183
NlaIV	GGNNCC	1 cut(s)	9
PaqCI	CACCTGC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	28, 169
PspN4I	GGNNCC	1 cut(s)	9
PsrI	GAACNNNNNNTAC	2 cut(s)	60, 92
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	131, 279, 309
SatI	GCNGC	2 cut(s)	27, 168
Sau3AI	GATC	2 cut(s)	120, 183
SetI	ASST	6 cut(s)	41, 50, 131, 192, 231, 279
SfaNI	GCATC	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	2 cut(s)	143, 168
TaaI	ACNGT	3 cut(s)	91, 215, 222
TaqI	TCGA	2 cut(s)	16, 321
TasI	AATT	1 cut(s)	109
TauI	GCSGC	1 cut(s)	170
Tru1I	TTAA	3 cut(s)	131, 279, 309
Tru9I	TTAA	3 cut(s)	131, 279, 309
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	1 cut(s)	26
TspRI	CASTG	1 cut(s)	36
Vha464I	CTTAAG	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.