AT3G27110

Peptidase family M48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006709
Physical Location & Seq
Forward (+)
9997808 .. 10000230
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27110.3

Sequence Viewer

Length: 1035 bp
ATGGCGGTTTCAGTCTCAGCTCCGGTTTTGTCCCTCTGTTACAATCAGAGCGGCGAATTGTCTCGTAGTTTGGGATATAGACTACCGAAGAAAGTGGGATTTAGCTCTGGTCGTCGTTCAGTGAGTTATATCGGTTTCGGTGCGGAGAAAGTTGGAAGATTTAGGGTTAGGGTTCCGATTTGCAGAGCTGTACCTCCTCTCTTGTTCAAAGATCTCGATGCTGATGATTTCCGACATCCTTTTGATAAGCAGAACACGTTGTTACTAAGGGCTATACCGGGGTTGAACGAATTCGGCAAAGCTCTTTTAGGGTCAATGACGGAGCAGATTATGCTTCTTGAGAACATTGGGACTTCTGTTCTTGTTTCCAAGAATCAGCTCTCTGATCTTCACGGTTTGTTGGTTGAGGCTGCTGAGATTTTGAATATAGAGGCTCCTGATCTATATGTGCGACAGAGTCCTGTTCCTAATGCGTATACGCTGGCAATAAGCGGTAAGAAGCCGTTTATTGTTGTCCACACCAGCTTGATCGAGCTTCTTACTAGCGCGGAGCTACAGGCTGTCTTAGCCCATGAACTAGGCCATCTGAAGTGTGATCACGGCGTGTGGCTCACATTTGCAAATATTCTTACTCTTGGGGCTTATACAGTTCCTGCTTTTGGGCAAATGATAGCTCGAACCTTGGAAGAACAGTTACTTCGTTGGCTACGTTCAGCAGAGCTGACTTGTGATCGCGCAGCACTACTCGTCGCCCAAGATCCAAAGGTTGTTGTATCTGTTCTGATGAAATTAGCCGGAGGATGTCCATCAATCGCTGATCAGCTAAATGTTGACGCATTTCTAGAACAAGCCCGTTCATATGACAAAGCTTCTTCAAGCCCCTTGGGATGGTACATAAGAAATGCTCAGACTAGTCAACTTTCGCATCCATTGCCGGTTCTTCGTGCACGTGAGATTGATGAGTGGTCCAGGAGTCTCGAGTACAAAAGTCTCCTGAAACGGGCAAATCGAAAAAGCACAGTACAGAAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M48

Protein Analysis

344

Amino Acids

37.95

Weight (kDa)

9.13

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 129 - 254 2e-15 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 476
AccII CGCG 2 cut(s) 548, 735
AciI CCGC 5 cut(s) 5, 51, 143, 492, 548
AclWI GGATC 1 cut(s) 752
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 608
AcvI CACGTG 1 cut(s) 950
AdeI CACNNNGTG 1 cut(s) 604
AfaI GTAC 4 cut(s) 192, 893, 983, 1023
AfiI CCNNNNNNNGG 3 cut(s) 659, 888, 1000
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 4 cut(s) 208, 286, 424, 876
AhlI ACTAGT 1 cut(s) 911
AjnI CCWGG 1 cut(s) 968
Alw21I GWGCWC 1 cut(s) 949
Alw26I GTCTC 4 cut(s) 19, 66, 980, 995
Alw44I GTGCAC 1 cut(s) 945
AlwI GGATC 1 cut(s) 752
AlwNI CAGNNNCTG 1 cut(s) 653
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 1 cut(s) 580
ApaLI GTGCAC 1 cut(s) 945
ApeKI GCWGC 2 cut(s) 410, 737
ApoI RAATTY 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 2 cut(s) 548, 737
AspS9I GGNCC 1 cut(s) 966
AsuC2I CCSGG 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 1 cut(s) 966
BaeGI GKGCMC 1 cut(s) 949
BarI GAAGNNNNNNTAC 2 cut(s) 678, 710
BbrPI CACGTG 1 cut(s) 950
Bbv12I GWGCWC 1 cut(s) 949
BbvI GCAGC 2 cut(s) 397, 749
BccI CCATC 3 cut(s) 591, 814, 882
BceAI ACGGC 2 cut(s) 487, 616
BciT130I CCWGG 1 cut(s) 970
BclI TGATCA 2 cut(s) 595, 817
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 4 cut(s) 19, 66, 980, 995
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 4 cut(s) 543, 578, 842, 912
BfmI CTRYAG 1 cut(s) 554
BglII AGATCT 1 cut(s) 211
BisI GCNGC 3 cut(s) 52, 411, 738
BlsI GCNGC 3 cut(s) 53, 412, 739
Bme1390I CCNGG 2 cut(s) 279, 970
Bme18I GGWCC 1 cut(s) 966
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 1 cut(s) 966
BmiI GGNNCC 2 cut(s) 174, 435
BmrFI CCNGG 2 cut(s) 279, 970
BmsI GCATC 2 cut(s) 208, 934
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 950
BsaBI GATNNNNATC 1 cut(s) 805
BsaJI CCNNGG 3 cut(s) 278, 681, 882
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 3 cut(s) 659, 888, 1000
Bse118I RCCGGY 1 cut(s) 934
Bse3DI GCAATG 1 cut(s) 929
Bse8I GATNNNNATC 1 cut(s) 805
BseBI CCWGG 1 cut(s) 970
BseDI CCNNGG 3 cut(s) 278, 681, 882
BseGI GGATG 4 cut(s) 235, 806, 893, 925
BseJI GATNNNNATC 1 cut(s) 805
BseLI CCNNNNNNNGG 3 cut(s) 659, 888, 1000
BseMI GCAATG 1 cut(s) 929
BseMII CTCAG 3 cut(s) 30, 405, 920
BseRI GAGGAG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 2 cut(s) 397, 749
Bsh1236I CGCG 2 cut(s) 548, 735
BshFI GGCC 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 949
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 4 cut(s) 23, 278, 795, 935
BslFI GGGAC 2 cut(s) 16, 364
BslI CCNNNNNNNGG 3 cut(s) 659, 888, 1000
BsmAI GTCTC 4 cut(s) 19, 66, 980, 995
BsmFI GGGAC 2 cut(s) 16, 364
BsnI GGCC 1 cut(s) 582
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 1 cut(s) 949
Bsp143I GATC 8 cut(s) 211, 385, 439, 528, 595, 730, 757, 817
BspACI CCGC 5 cut(s) 5, 51, 143, 492, 548
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 3 cut(s) 29, 406, 919
BspFNI CGCG 2 cut(s) 548, 735
BspLI GGNNCC 2 cut(s) 174, 435
BspPI GGATC 1 cut(s) 752
BsrBI CCGCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 929
BsrFI RCCGGY 1 cut(s) 934
BssAI RCCGGY 1 cut(s) 934
BssECI CCNNGG 3 cut(s) 278, 681, 882
BssMI GATC 8 cut(s) 211, 385, 439, 528, 595, 730, 757, 817
BssNAI GTATAC 1 cut(s) 477
BssT1I CCWWGG 2 cut(s) 681, 882
Bst1107I GTATAC 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 970
Bst4CI ACNGT 4 cut(s) 395, 649, 693, 1021
BstAPI GCANNNNNTGC 2 cut(s) 331, 931
BstBAI YACGTR 1 cut(s) 950
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 5 cut(s) 16, 266, 414, 565, 906
BstF5I GGATG 4 cut(s) 235, 806, 893, 925
BstFNI CGCG 2 cut(s) 548, 735
BstHHI GCGC 2 cut(s) 548, 737
BstKTI GATC 8 cut(s) 214, 388, 442, 531, 598, 733, 760, 820
BstMAI GTCTC 4 cut(s) 19, 66, 980, 995
BstMBI GATC 8 cut(s) 211, 385, 439, 528, 595, 730, 757, 817
BstMWI GCNNNNNNNGC 3 cut(s) 331, 566, 931
BstNI CCWGG 1 cut(s) 970
BstSCI CCNGG 2 cut(s) 277, 968
BstSFI CTRYAG 1 cut(s) 554
BstSLI GKGCMC 1 cut(s) 949
BstUI CGCG 2 cut(s) 548, 735
BstV1I GCAGC 2 cut(s) 397, 749
BstX2I RGATCY 2 cut(s) 211, 757
BstYI RGATCY 2 cut(s) 211, 757
BstZ17I GTATAC 1 cut(s) 477
BsuRI GGCC 1 cut(s) 582
BtsCI GGATG 4 cut(s) 235, 806, 893, 925
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 483
CaiI CAGNNNCTG 1 cut(s) 653
CfoI GCGC 2 cut(s) 548, 737
Cfr10I RCCGGY 1 cut(s) 934
Cfr13I GGNCC 1 cut(s) 966
CseI GACGC 1 cut(s) 842
Csp6I GTAC 4 cut(s) 191, 892, 982, 1022
CviAII CATG 1 cut(s) 572
CviQI GTAC 4 cut(s) 191, 892, 982, 1022
DdeI CTNAG 5 cut(s) 16, 266, 414, 565, 906
DpnI GATC 8 cut(s) 213, 387, 441, 530, 597, 732, 759, 819
DpnII GATC 8 cut(s) 211, 385, 439, 528, 595, 730, 757, 817
DraIII CACNNNGTG 1 cut(s) 604
Eco130I CCWWGG 2 cut(s) 681, 882
Eco47I GGWCC 1 cut(s) 966
Eco57I CTGAAG 1 cut(s) 608
Eco72I CACGTG 1 cut(s) 950
Eco88I CYCGRG 1 cut(s) 977
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 968
EcoT14I CCWWGG 2 cut(s) 681, 882
ErhI CCWWGG 2 cut(s) 681, 882
FaeI CATG 1 cut(s) 575
FaqI GGGAC 2 cut(s) 16, 364
FatI CATG 1 cut(s) 571
FauNDI CATATG 1 cut(s) 859
FbaI TGATCA 2 cut(s) 595, 817
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 3 cut(s) 52, 411, 738
FokI GGATG 4 cut(s) 222, 813, 900, 912
Fsp4HI GCNGC 3 cut(s) 52, 411, 738
FspBI CTAG 4 cut(s) 543, 578, 842, 912
GlaI GCGC 2 cut(s) 547, 736
GluI GCNGC 3 cut(s) 52, 411, 738
HaeIII GGCC 1 cut(s) 582
HapII CCGG 4 cut(s) 23, 278, 795, 935
HgaI GACGC 1 cut(s) 842
HhaI GCGC 2 cut(s) 548, 737
Hin1II CATG 1 cut(s) 575
Hin6I GCGC 2 cut(s) 546, 735
HinP1I GCGC 2 cut(s) 546, 735
HincII GTYRAC 2 cut(s) 832, 917
HindII GTYRAC 2 cut(s) 832, 917
HindIII AAGCTT 1 cut(s) 867
HinfI GANTC 3 cut(s) 373, 457, 973
HpaII CCGG 4 cut(s) 23, 278, 795, 935
Hpy166II GTNNAC 5 cut(s) 477, 517, 832, 917, 947
Hpy188I TCNGA 7 cut(s) 48, 177, 233, 385, 588, 783, 909
Hpy188III TCNNGA 6 cut(s) 215, 338, 437, 842, 977, 994
Hpy8I GTNNAC 5 cut(s) 477, 517, 832, 917, 947
Hpy99I CGWCG 2 cut(s) 117, 752
HpyAV CCTTC 1 cut(s) 1021
HpyCH4III ACNGT 4 cut(s) 395, 649, 693, 1021
HpyCH4IV ACGT 3 cut(s) 257, 709, 949
HpyCH4V TGCA 3 cut(s) 183, 620, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 331, 566, 931
HpyF3I CTNAG 5 cut(s) 16, 266, 414, 565, 906
HpySE526I ACGT 3 cut(s) 257, 709, 949
Hsp92II CATG 1 cut(s) 575
HspAI GCGC 2 cut(s) 546, 735
Ksp22I TGATCA 2 cut(s) 595, 817
Kzo9I GATC 8 cut(s) 211, 385, 439, 528, 595, 730, 757, 817
LmnI GCTCC 4 cut(s) 25, 322, 439, 550
Lsp1109I GCAGC 2 cut(s) 397, 749
LweI GCATC 2 cut(s) 208, 934
MaeI CTAG 4 cut(s) 543, 578, 842, 912
MaeII ACGT 3 cut(s) 257, 709, 949
MaeIII GTNAC 3 cut(s) 38, 261, 693
MalI GATC 8 cut(s) 213, 387, 441, 530, 597, 732, 759, 819
MbiI CCGCTC 1 cut(s) 51
MboI GATC 8 cut(s) 211, 385, 439, 528, 595, 730, 757, 817
MboII GAAGA 6 cut(s) 100, 168, 380, 698, 864, 932
MflI RGATCY 2 cut(s) 211, 757
MhlI GDGCHC 1 cut(s) 949
MluCI AATT 3 cut(s) 56, 290, 788
MlyI GAGTC 2 cut(s) 466, 982
MmeI TCCRAC 2 cut(s) 133, 256
MnlI CCTC 6 cut(s) 44, 204, 207, 400, 424, 791
MroXI GAANNNNTTC 1 cut(s) 290
MspI CCGG 4 cut(s) 23, 278, 795, 935
MspR9I CCNGG 2 cut(s) 279, 970
MvaI CCWGG 1 cut(s) 970
MvnI CGCG 2 cut(s) 548, 735
MwoI GCNNNNNNNGC 3 cut(s) 331, 566, 931
NciI CCSGG 1 cut(s) 279
NdeI CATATG 1 cut(s) 859
NdeII GATC 8 cut(s) 211, 385, 439, 528, 595, 730, 757, 817
NlaIII CATG 1 cut(s) 575
NlaIV GGNNCC 2 cut(s) 174, 435
PaeR7I CTCGAG 1 cut(s) 977
PcsI WCGNNNNNNNCGW 2 cut(s) 706, 1006
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 373
PflFI GACNNNGTC 1 cut(s) 456
PfoI TCCNGGA 1 cut(s) 968
PkrI GCNGC 3 cut(s) 53, 412, 739
PleI GAGTC 2 cut(s) 465, 981
PmaCI CACGTG 1 cut(s) 950
PmlI CACGTG 1 cut(s) 950
PpsI GAGTC 2 cut(s) 465, 981
Ppu21I YACGTR 1 cut(s) 950
Psp6I CCWGG 1 cut(s) 968
PspCI CACGTG 1 cut(s) 950
PspGI CCWGG 1 cut(s) 968
PspN4I GGNNCC 2 cut(s) 174, 435
PspPI GGNCC 1 cut(s) 966
PstNI CAGNNNCTG 1 cut(s) 653
PsuI RGATCY 2 cut(s) 211, 757
PsyI GACNNNGTC 1 cut(s) 456
RsaI GTAC 4 cut(s) 192, 893, 983, 1023
RsaNI GTAC 4 cut(s) 191, 892, 982, 1022
SatI GCNGC 3 cut(s) 52, 411, 738
Sau3AI GATC 8 cut(s) 211, 385, 439, 528, 595, 730, 757, 817
Sau96I GGNCC 1 cut(s) 966
SchI GAGTC 2 cut(s) 466, 982
ScrFI CCNGG 2 cut(s) 279, 970
SduI GDGCHC 1 cut(s) 949
SfaNI GCATC 2 cut(s) 208, 934
SfcI CTRYAG 1 cut(s) 554
Sfr274I CTCGAG 1 cut(s) 977
SinI GGWCC 1 cut(s) 966
SlaI CTCGAG 1 cut(s) 977
SmlI CTYRAG 2 cut(s) 338, 977
SmoI CTYRAG 2 cut(s) 338, 977
SpeI ACTAGT 1 cut(s) 911
Sse9I AATT 3 cut(s) 56, 290, 788
SsiI CCGC 5 cut(s) 5, 51, 143, 492, 548
SspI AATATT 1 cut(s) 625
SspMI CTAG 4 cut(s) 543, 578, 842, 912
StyD4I CCNGG 2 cut(s) 277, 968
StyI CCWWGG 2 cut(s) 681, 882
TaaI ACNGT 4 cut(s) 395, 649, 693, 1021
TaiI ACGT 3 cut(s) 260, 712, 952
TaqI TCGA 5 cut(s) 216, 531, 676, 978, 1009
TasI AATT 3 cut(s) 56, 290, 788
TatI WGTACW 2 cut(s) 981, 1021
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 1 cut(s) 373
TscAI CASTG 1 cut(s) 126
TseI GCWGC 2 cut(s) 410, 737
TspDTI ATGAA 3 cut(s) 588, 800, 846
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 1 cut(s) 126
Tth111I GACNNNGTC 1 cut(s) 456
VneI GTGCAC 1 cut(s) 945
VpaK11BI GGWCC 1 cut(s) 966
XapI RAATTY 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 841
XhoI CTCGAG 1 cut(s) 977
XmiI GTMKAC 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 4 cut(s) 543, 578, 842, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.