Rh2CG638900

Peptidase family M48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006709
Physical Location & Seq
Reverse (-)
80988648 .. 80991668
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG638900.1

Sequence Viewer

Length: 759 bp
ATGGCTTCCGTTCCCCTATCTTCTCTCTCCCTCAACCACAACCCCACCTCTCTCAGCTTCATCTCCACAGCTTCAGATCACTTCAGGCTTGCTTCACCTACCTTTCAATTCGCCACCGTCAGCAAATTTCGCTGCGTCAGGTTCGCCGTGAGTTGCAGAGCTTCCTCCGTCGTCTTCCACAACCTCGACGCCGATGACTTCCGCCACCCTCTCGATAAACAGAATACGTTGATTTTGAGAGCGATTCCAGGACTGACTGAAGTTGGAAAGGTTCTACTAGGATCTGTTACGGAGCAAGTGATGCTTCTTGAGAATATCGGAACGTCCCTTCTTGTTTCGGAAAATCAGCTTTCTGATCTACATAAATTGATGGTTGAAGCCGCGGACATACTCAACATTGATGCTCCTGATTTATATGTTCGTCAAAGTCCTGTACCAAATGCATACACTTTAGCAATAAGTGGTAAAAAGCCATTTGTTGTTATCCATACTAGTCTAGTGGAGCTTTTGACACGAGAAGAGTTGCAGGCTGTTTTGGCTCATGAGTTGGGTCATTTGAAATGCGACCATGGTGTGTGGCTTACATTTGCAAATATCCTTACCCTTGGAGCTTATACCATACCTGGGCTTGGTGGCATGATTGCTCAGAGTTTAGAAGAGCAGTTATTTCGTTGGCTTCGAGCAGCAGAGCTAACCTGTGATCGTGCAGCCCTTCTTGTTGCTCAAGACCCAAAGGTAAACAACTTCCAGAAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M48

Protein Analysis

252

Amino Acids

27.68

Weight (kDa)

6.12

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 118 - 206 2.9e-15 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 383
AciI CCGC 3 cut(s) 202, 381, 383
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 3 cut(s) 57, 67, 279
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 2 cut(s) 624, 629
AgsI TTSAA 3 cut(s) 107, 377, 559
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 2 cut(s) 247, 622
AluBI AGCT 8 cut(s) 57, 71, 161, 349, 505, 611, 691, 754
AluI AGCT 8 cut(s) 57, 71, 161, 349, 505, 611, 691, 754
AlwI GGATC 1 cut(s) 289
ApeKI GCWGC 3 cut(s) 132, 683, 707
ApoI RAATTY 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 87
BauI CACGAG 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 3 cut(s) 119, 695, 719
BccI CCATC 1 cut(s) 364
BceAI ACGGC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 2 cut(s) 249, 624
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 3 cut(s) 278, 492, 497
BfmI CTRYAG 1 cut(s) 755
BisI GCNGC 4 cut(s) 133, 381, 684, 708
BlsI GCNGC 4 cut(s) 134, 382, 685, 709
Bme1390I CCNGG 2 cut(s) 249, 624
BmrFI CCNGG 2 cut(s) 249, 624
BmsI GCATC 2 cut(s) 291, 391
BpiI GAAGAC 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 329, 708
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 381, 568, 604, 623
Bsc4I CCNNNNNNNGG 2 cut(s) 624, 629
BseBI CCWGG 2 cut(s) 249, 624
BseDI CCNNGG 4 cut(s) 381, 568, 604, 623
BseLI CCNNNNNNNGG 2 cut(s) 624, 629
BseMII CTCAG 2 cut(s) 67, 659
BseXI GCAGC 3 cut(s) 119, 695, 719
BsgI GTGCAG 1 cut(s) 726
Bsh1236I CGCG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 624, 629
BsmFI GGGAC 1 cut(s) 310
Bsp143I GATC 4 cut(s) 76, 281, 355, 700
Bsp19I CCATGG 1 cut(s) 568
BspACI CCGC 3 cut(s) 202, 381, 383
BspCNI CTCAG 2 cut(s) 66, 658
BspFNI CGCG 1 cut(s) 383
BspHI TCATGA 1 cut(s) 541
BspPI GGATC 1 cut(s) 289
BspQI GCTCTTC 1 cut(s) 651
BssECI CCNNGG 4 cut(s) 381, 568, 604, 623
BssMI GATC 4 cut(s) 76, 281, 355, 700
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 513
BssT1I CCWWGG 2 cut(s) 568, 604
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 249, 624
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 2 cut(s) 513, 651
BstACI GRCGYC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 90, 528
BstDEI CTNAG 2 cut(s) 53, 645
BstDSI CCRYGG 2 cut(s) 381, 568
BstFNI CGCG 1 cut(s) 383
BstKTI GATC 4 cut(s) 79, 284, 358, 703
BstMBI GATC 4 cut(s) 76, 281, 355, 700
BstMWI GCNNNNNNNGC 3 cut(s) 129, 301, 536
BstNI CCWGG 2 cut(s) 249, 624
BstSCI CCNGG 2 cut(s) 247, 622
BstSFI CTRYAG 1 cut(s) 755
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 3 cut(s) 119, 695, 719
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BtgI CCRYGG 2 cut(s) 381, 568
Cac8I GCNNGC 2 cut(s) 90, 528
CciI TCATGA 1 cut(s) 541
Cfr42I CCGCGG 1 cut(s) 384
CseI GACGC 2 cut(s) 124, 197
Csp6I GTAC 1 cut(s) 434
CviAII CATG 3 cut(s) 542, 569, 637
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 2 cut(s) 53, 645
DpnI GATC 4 cut(s) 78, 283, 357, 702
DpnII GATC 4 cut(s) 76, 281, 355, 700
Eam1104I CTCTTC 2 cut(s) 513, 651
EarI CTCTTC 2 cut(s) 513, 651
EciI GGCGGA 1 cut(s) 191
Eco130I CCWWGG 2 cut(s) 568, 604
Eco57I CTGAAG 3 cut(s) 57, 67, 279
EcoRII CCWGG 2 cut(s) 247, 622
EcoT14I CCWWGG 2 cut(s) 568, 604
EcoT22I ATGCAT 1 cut(s) 445
ErhI CCWWGG 2 cut(s) 568, 604
FaeI CATG 3 cut(s) 545, 572, 640
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 310
FatI CATG 3 cut(s) 541, 568, 636
Fnu4HI GCNGC 4 cut(s) 133, 381, 684, 708
Fsp4HI GCNGC 4 cut(s) 133, 381, 684, 708
FspBI CTAG 3 cut(s) 278, 492, 497
GluI GCNGC 4 cut(s) 133, 381, 684, 708
HgaI GACGC 2 cut(s) 124, 197
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 545, 572, 640
HinfI GANTC 1 cut(s) 244
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 739
Hpy188I TCNGA 5 cut(s) 76, 320, 340, 355, 648
Hpy188III TCNNGA 6 cut(s) 212, 308, 407, 542, 725, 748
Hpy8I GTNNAC 1 cut(s) 739
Hpy99I CGWCG 2 cut(s) 173, 191
HpyAV CCTTC 2 cut(s) 338, 722
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 227, 323
HpyCH4V TGCA 5 cut(s) 156, 443, 526, 590, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 301, 536
HpyF3I CTNAG 2 cut(s) 53, 645
HpySE526I ACGT 2 cut(s) 227, 323
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 545, 572, 640
KspI CCGCGG 1 cut(s) 384
Kzo9I GATC 4 cut(s) 76, 281, 355, 700
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 4 cut(s) 292, 409, 502, 608
Lsp1109I GCAGC 3 cut(s) 119, 695, 719
LweI GCATC 2 cut(s) 291, 391
MaeI CTAG 3 cut(s) 278, 492, 497
MaeII ACGT 2 cut(s) 227, 323
MaeIII GTNAC 1 cut(s) 286
MalI GATC 4 cut(s) 78, 283, 357, 702
MboI GATC 4 cut(s) 76, 281, 355, 700
MboII GAAGA 4 cut(s) 12, 166, 530, 668
MflI RGATCY 1 cut(s) 281
MluCI AATT 3 cut(s) 107, 125, 365
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 5 cut(s) 41, 58, 175, 194, 219
Mph1103I ATGCAT 1 cut(s) 445
MspA1I CMGCKG 1 cut(s) 383
MspR9I CCNGG 2 cut(s) 249, 624
MvaI CCWGG 2 cut(s) 249, 624
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 129, 301, 536
NcoI CCATGG 1 cut(s) 568
NdeII GATC 4 cut(s) 76, 281, 355, 700
NlaIII CATG 3 cut(s) 545, 572, 640
NsiI ATGCAT 1 cut(s) 445
PagI TCATGA 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 651
PcsI WCGNNNNNNNCGW 1 cut(s) 676
PfeI GAWTC 1 cut(s) 244
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 4 cut(s) 134, 382, 685, 709
Psp6I CCWGG 2 cut(s) 247, 622
PspGI CCWGG 2 cut(s) 247, 622
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
SacII CCGCGG 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 651
SatI GCNGC 4 cut(s) 133, 381, 684, 708
Sau3AI GATC 4 cut(s) 76, 281, 355, 700
ScrFI CCNGG 2 cut(s) 249, 624
SfaNI GCATC 2 cut(s) 291, 391
SfcI CTRYAG 1 cut(s) 755
Sfr303I CCGCGG 1 cut(s) 384
SgrBI CCGCGG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 308, 723
SmoI CTYRAG 2 cut(s) 308, 723
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 3 cut(s) 107, 125, 365
SsiI CCGC 3 cut(s) 202, 381, 383
SspMI CTAG 3 cut(s) 278, 492, 497
StyD4I CCNGG 2 cut(s) 247, 622
StyI CCWWGG 2 cut(s) 568, 604
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 2 cut(s) 230, 326
TaqI TCGA 3 cut(s) 186, 213, 679
TasI AATT 3 cut(s) 107, 125, 365
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 244
TseI GCWGC 3 cut(s) 132, 683, 707
TspDTI ATGAA 1 cut(s) 49
TspGWI ACGGA 2 cut(s) 157, 305
XapI RAATTY 1 cut(s) 125
XspI CTAG 3 cut(s) 278, 492, 497
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.